Csgalnact1 (chondroitin sulfate N-acetylgalactosaminyltransferase 1) - Rat Genome Database

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Gene: Csgalnact1 (chondroitin sulfate N-acetylgalactosaminyltransferase 1) Ictidomys tridecemlineatus
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Symbol: Csgalnact1
Name: chondroitin sulfate N-acetylgalactosaminyltransferase 1
RGD ID: 12514989
Description: ENCODES a protein that exhibits glucuronosyltransferase activity (ortholog); glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity (ortholog); peptidoglycan glycosyltransferase activity (ortholog); INVOLVED IN cartilage development (ortholog); chondroitin sulfate metabolic process (ortholog); chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); SKELETAL DYSPLASIA, MILD, WITH JOINT LAXITY AND ADVANCED BONE AGE (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494314,762,965 - 14,931,054 (+)NCBI
SpeTri2.0NW_0049365553,639,459 - 3,807,483 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Csgalnact1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494314,762,965 - 14,931,054 (+)NCBI
SpeTri2.0NW_0049365553,639,459 - 3,807,483 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSGALNACT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38819,404,161 - 19,757,908 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl819,404,161 - 19,758,029 (-)EnsemblGRCh38hg38GRCh38
GRCh37819,261,672 - 19,615,419 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36819,305,952 - 19,584,374 (-)NCBINCBI36hg18NCBI36
Celera818,225,010 - 18,503,692 (-)NCBI
Cytogenetic Map8p21.3NCBI
HuRef817,801,989 - 18,080,455 (-)NCBIHuRef
CHM1_1819,463,117 - 19,741,804 (-)NCBICHM1_1
T2T-CHM13v2.0819,669,045 - 20,022,919 (-)NCBI
Csgalnact1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39868,809,433 - 69,188,270 (-)NCBIGRCm39mm39
GRCm39 Ensembl868,809,433 - 69,187,798 (-)Ensembl
GRCm38868,356,781 - 68,735,621 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl868,356,781 - 68,735,146 (-)EnsemblGRCm38mm10GRCm38
MGSCv37870,880,682 - 71,259,041 (-)NCBIGRCm37mm9NCBIm37
MGSCv36871,285,783 - 71,664,123 (-)NCBImm8
Celera870,901,764 - 71,270,170 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
Csgalnact1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21620,995,210 - 21,330,586 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1621,235,784 - 21,330,319 (+)Ensembl
Rnor_6.01622,704,318 - 23,075,071 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1622,979,444 - 23,074,798 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01622,733,680 - 22,963,531 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41622,852,516 - 22,947,139 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11622,852,484 - 22,946,543 (+)NCBI
Celera1621,395,359 - 21,488,688 (+)NCBICelera
Cytogenetic Map16p14NCBI
Csgalnact1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540343,178,520 - 43,478,885 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540343,178,520 - 43,347,121 (-)NCBIChiLan1.0ChiLan1.0
CSGALNACT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1815,576,416 - 15,929,342 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl815,576,416 - 15,904,123 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0818,626,998 - 18,980,416 (-)NCBIMhudiblu_PPA_v0panPan3
CSGALNACT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11622,219,324 - 22,546,501 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1622,219,861 - 22,392,937 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1622,724,714 - 23,051,863 (-)NCBI
ROS_Cfam_1.01623,960,246 - 24,287,450 (-)NCBI
ROS_Cfam_1.0 Ensembl1623,961,632 - 24,286,927 (-)Ensembl
UMICH_Zoey_3.11622,317,927 - 22,427,544 (-)NCBI
UNSW_CanFamBas_1.01622,903,836 - 23,231,159 (-)NCBI
UU_Cfam_GSD_1.01622,955,384 - 23,282,687 (-)NCBI
CSGALNACT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1712,428,893 - 12,498,585 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11712,145,141 - 12,498,777 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21710,059,885 - 10,154,331 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CSGALNACT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1817,494,312 - 17,851,497 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl817,494,187 - 17,695,037 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605224,650,059 - 24,756,656 (+)NCBIVero_WHO_p1.0
Csgalnact1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475815,200,713 - 15,367,236 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462475815,200,726 - 15,517,146 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013360341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013360341   ⟹   XP_013215795
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494314,762,965 - 14,931,054 (+)NCBI
SpeTri2.0NW_0049365553,639,459 - 3,807,483 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013215795 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3294448 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013215795   ⟸   XM_013360341
- UniProtKB: I3MY44 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025203 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000017040 ENTREZGENE
  ENSSTOP00000017040.2 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024189.2 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.10 UniProtKB/TrEMBL
InterPro Chond_GalNAc UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene Csgalnact1 ENTREZGENE
Pfam CHGN UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt I3MY44 ENTREZGENE, UniProtKB/TrEMBL