TNFRSF11A (TNF receptor superfamily member 11a) - Rat Genome Database

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Gene: TNFRSF11A (TNF receptor superfamily member 11a) Pan paniscus
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Symbol: TNFRSF11A
Name: TNF receptor superfamily member 11a
RGD ID: 11700485
Description: ENCODES a protein that exhibits cytokine binding (inferred); transmembrane signaling receptor activity (inferred); tumor necrosis factor receptor activity (inferred); INVOLVED IN cellular response to zinc ion starvation (ortholog); lymph node development (ortholog); mammary gland alveolus development (ortholog); ASSOCIATED WITH Alveolar Bone Loss (ortholog); autosomal recessive osteopetrosis 7 (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); FOUND IN cell surface (inferred); cytosol (inferred); external side of plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tumor necrosis factor receptor superfamily member 11A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21779,846,412 - 79,912,279 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11865,539,023 - 65,604,890 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01855,695,394 - 55,761,307 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11859,032,727 - 59,075,044 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1859,034,770 - 59,075,044 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TNFRSF11A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21779,846,412 - 79,912,279 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11865,539,023 - 65,604,890 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01855,695,394 - 55,761,307 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11859,032,727 - 59,075,044 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1859,034,770 - 59,075,044 (+)Ensemblpanpan1.1panPan2
TNFRSF11A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381862,325,310 - 62,391,288 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1862,325,287 - 62,391,288 (+)EnsemblGRCh38hg38GRCh38
GRCh371859,992,543 - 60,058,521 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361858,143,528 - 58,204,484 (+)NCBINCBI36Build 36hg18NCBI36
Build 341858,143,527 - 58,204,482NCBI
Celera1856,711,789 - 56,772,745 (+)NCBICelera
Cytogenetic Map18q21.33NCBI
HuRef1856,726,294 - 56,766,005 (+)NCBIHuRef
CHM1_11859,988,087 - 60,050,490 (+)NCBICHM1_1
T2T-CHM13v2.01862,528,176 - 62,594,158 (+)NCBIT2T-CHM13v2.0
Tnfrsf11a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391105,708,443 - 105,777,172 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1105,708,443 - 105,775,709 (+)EnsemblGRCm39 Ensembl
GRCm381105,780,673 - 105,849,444 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1105,780,718 - 105,847,981 (+)EnsemblGRCm38mm10GRCm38
MGSCv371107,677,300 - 107,744,558 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361107,608,270 - 107,672,989 (+)NCBIMGSCv36mm8
Celera1108,658,349 - 108,696,865 (+)NCBICelera
Cytogenetic Map1E2.1NCBI
cM Map149.7NCBI
Tnfrsf11a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81322,442,930 - 22,501,257 (+)NCBIGRCr8
mRatBN7.21321,928,370 - 21,986,719 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1321,928,408 - 21,986,695 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1322,247,466 - 22,306,553 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01323,532,261 - 23,591,345 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01322,216,155 - 22,275,239 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01325,778,306 - 25,835,802 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1325,778,317 - 25,835,957 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01330,966,261 - 30,997,692 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41311,958,002 - 12,014,371 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1321,798,588 - 21,856,355 (+)NCBICelera
Cytogenetic Map13p11NCBI
Tnfrsf11a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540246,264,164 - 46,296,368 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540246,242,329 - 46,298,157 (+)NCBIChiLan1.0ChiLan1.0
TNFRSF11A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1114,504,595 - 14,555,956 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl114,503,033 - 14,556,041 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha115,469,086 - 15,523,233 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0114,362,189 - 14,416,396 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl114,362,936 - 14,416,396 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1114,398,162 - 14,452,574 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0114,331,546 - 14,385,610 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0114,578,257 - 14,632,411 (-)NCBIUU_Cfam_GSD_1.0
Tnfrsf11a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494427,705,806 - 27,756,172 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364972,945,010 - 2,995,207 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364972,944,841 - 2,986,113 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNFRSF11A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1159,128,038 - 159,187,481 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11159,128,039 - 159,187,476 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21176,590,571 - 176,650,002 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TNFRSF11A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11817,385,251 - 17,446,442 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660608,239,048 - 8,304,073 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnfrsf11a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247928,029,364 - 8,084,424 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247928,029,383 - 8,087,824 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000024826   ⟹   ENSPPAP00000005462
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1859,034,770 - 59,072,418 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000024829   ⟹   ENSPPAP00000005465
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1859,036,021 - 59,075,044 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000024830   ⟹   ENSPPAP00000005466
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1859,036,021 - 59,072,418 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000024840   ⟹   ENSPPAP00000005467
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1859,036,021 - 59,072,418 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000024843   ⟹   ENSPPAP00000005468
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1859,036,021 - 59,072,140 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000024847   ⟹   ENSPPAP00000005469
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1859,036,021 - 59,055,224 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000024848   ⟹   ENSPPAP00000005470
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1859,036,559 - 59,072,418 (+)Ensembl
RefSeq Acc Id: XM_034943906   ⟹   XP_034799797
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21779,846,412 - 79,912,279 (+)NCBI
NHGRI_mPanPan11865,539,023 - 65,604,890 (+)NCBI
Mhudiblu_PPA_v01855,695,394 - 55,761,307 (+)NCBI
RefSeq Acc Id: XM_034943907   ⟹   XP_034799798
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21779,868,490 - 79,912,279 (+)NCBI
NHGRI_mPanPan11865,561,101 - 65,604,890 (+)NCBI
Mhudiblu_PPA_v01855,718,060 - 55,761,307 (+)NCBI
RefSeq Acc Id: XM_034943909   ⟹   XP_034799800
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21779,846,412 - 79,912,279 (+)NCBI
NHGRI_mPanPan11865,539,023 - 65,604,890 (+)NCBI
Mhudiblu_PPA_v01855,695,394 - 55,761,307 (+)NCBI
RefSeq Acc Id: XP_034799797   ⟸   XM_034943906
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZNB3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034799800   ⟸   XM_034943909
- Peptide Label: isoform X3
- UniProtKB: A0A2R8ZKH9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034799798   ⟸   XM_034943907
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZNB7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000005465   ⟸   ENSPPAT00000024829
Ensembl Acc Id: ENSPPAP00000005466   ⟸   ENSPPAT00000024830
Ensembl Acc Id: ENSPPAP00000005462   ⟸   ENSPPAT00000024826
Ensembl Acc Id: ENSPPAP00000005469   ⟸   ENSPPAT00000024847
Ensembl Acc Id: ENSPPAP00000005470   ⟸   ENSPPAT00000024848
Ensembl Acc Id: ENSPPAP00000005468   ⟸   ENSPPAT00000024843
Ensembl Acc Id: ENSPPAP00000005467   ⟸   ENSPPAT00000024840
Protein Domains
TNFR-Cys


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000022623 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000024826.1 UniProtKB/TrEMBL
  ENSPPAT00000024829.1 UniProtKB/TrEMBL
  ENSPPAT00000024830.1 UniProtKB/TrEMBL
  ENSPPAT00000024840.1 UniProtKB/TrEMBL
  ENSPPAT00000024843.1 UniProtKB/TrEMBL
  ENSPPAT00000024847.1 UniProtKB/TrEMBL
  ENSPPAT00000024848.1 UniProtKB/TrEMBL
Gene3D-CATH Tumor Necrosis Factor Receptor, subunit A, domain 2 UniProtKB/TrEMBL
InterPro RANK_CRD_2 UniProtKB/TrEMBL
  TNFR/NGFR_Cys_rich_reg UniProtKB/TrEMBL
  TNFR_11 UniProtKB/TrEMBL
  TNFR_11A UniProtKB/TrEMBL
  TNFRSF11A UniProtKB/TrEMBL
  TNFRSF11A_N UniProtKB/TrEMBL
NCBI Gene TNFRSF11A ENTREZGENE
PANTHER TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 11A UniProtKB/TrEMBL
  TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 11A UniProtKB/TrEMBL
Pfam RANK_CRD_2 UniProtKB/TrEMBL
  TNFR_c6 UniProtKB/TrEMBL
PRINTS TNFACTORR11 UniProtKB/TrEMBL
  TNFACTORR11A UniProtKB/TrEMBL
PROSITE TNFR_NGFR_1 UniProtKB/TrEMBL
  TNFR_NGFR_2 UniProtKB/TrEMBL
SMART TNFR UniProtKB/TrEMBL
Superfamily-SCOP TNF receptor-like UniProtKB/TrEMBL
UniProt A0A2R8ZKH5_PANPA UniProtKB/TrEMBL
  A0A2R8ZKH6_PANPA UniProtKB/TrEMBL
  A0A2R8ZKH9 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZLJ8_PANPA UniProtKB/TrEMBL
  A0A2R8ZNB3 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZNB7 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZRK4_PANPA UniProtKB/TrEMBL