Slc9a3 (solute carrier family 9 (sodium/hydrogen exchanger), member 3) - Rat Genome Database

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Gene: Slc9a3 (solute carrier family 9 (sodium/hydrogen exchanger), member 3) Mus musculus
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Symbol: Slc9a3
Name: solute carrier family 9 (sodium/hydrogen exchanger), member 3
RGD ID: 11319
MGI Page MGI
Description: Enables PDZ domain binding activity and sodium:proton antiporter activity. Acts upstream of or within regulation of pH and sodium ion transport. Located in apical plasma membrane; brush border membrane; and vesicle. Is expressed in early conceptus; liver; metanephros; and oocyte. Human ortholog(s) of this gene implicated in congenital secretory sodium diarrhea 8. Orthologous to human SLC9A3 (solute carrier family 9 member A3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9030624O13Rik; AI930210; NHE; NHE-; NHE-3; NHE3; sodium/hydrogen exchanger 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391374,234,374 - 74,317,561 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1374,269,576 - 74,317,561 (+)EnsemblGRCm39 Ensembl
GRCm381374,086,255 - 74,169,442 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1374,121,457 - 74,169,442 (+)EnsemblGRCm38mm10GRCm38
MGSCv371374,258,963 - 74,303,512 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,587,517 - 74,632,066 (+)NCBIMGSCv36mm8
Celera1376,451,103 - 76,495,653 (+)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
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Original Reference(s)
Slc9a3MouseExperimental Diabetes Mellitus  ISOSlc9a3 (Rattus norvegicus)1625673protein:increased activity:kidney cortexRGD 
Slc9a3Mousehypertension  ISOSlc9a3 (Rattus norvegicus)727447 RGD 
Slc9a3Mouseobesity  ISOSlc9a3 (Rattus norvegicus)1625672protein:decreased expression:kidney cortexRGD 
Slc9a3Mouserenovascular hypertension treatmentISOSlc9a3 (Rattus norvegicus)727424 RGD 
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Original Reference(s)
Slc9a3Mouseautism spectrum disorder  ISOSLC9A3 (Homo sapiens)8554872ClinVar Annotator: match by term: Autism spectrum disorderClinVarPMID:28492532 and PMID:30504930
Slc9a3Mouseautosomal dominant dyskeratosis congenita 2  ISOSLC9A3 (Homo sapiens)8554872ClinVar Annotator: match by term: Dyskeratosis congenita and autosomal dominant 2ClinVarPMID:12629597 more ...
Slc9a3Mousecongenital secretory sodium diarrhea 8  ISOSLC9A3 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16199547 more ...
Slc9a3Mousedopamine transporter deficiency syndrome  ISOSLC9A3 (Homo sapiens)8554872ClinVar Annotator: match by term: Parkinsonism-dystonia and infantileClinVarPMID:21112253 and PMID:28492532
Slc9a3Mousegenetic disease  ISOSLC9A3 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
Slc9a3Mouseinterstitial lung disease 2  ISOSLC9A3 (Homo sapiens)8554872ClinVar Annotator: match by term: Interstitial lung disease 2ClinVarPMID:12629597 and PMID:28492532
Slc9a3Mouseschizophrenia  ISOSLC9A3 (Homo sapiens)8554872ClinVar Annotator: match by term: SchizophreniaClinVar 
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Original Reference(s)
Slc9a3Mousediarrhea  ISOSLC9A3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:26564064
Slc9a3MouseEdema  ISOSLC9A3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20553904
Slc9a3MouseExperimental Diabetes Mellitus  ISOSLC9A3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20003708
Slc9a3MouseHypotension  ISOSLC9A3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:26564064
Slc9a3Mouseintestinal obstruction  ISOSLC9A3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:22466613
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Original Reference(s)
Slc9a3Mousecongenital secretory sodium diarrhea 8  ISOSLC9A3 (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Slc9a3Mouse1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane multiple interactionsEXP 6480464[o and p'-DDT co-treated with DDT] results in increased expression of SLC9A3 mRNACTDPMID:27325568
Slc9a3Mouse1,1-dichloroethene decreases expressionEXP 6480464vinylidene chloride results in decreased expression of SLC9A3 mRNACTDPMID:26682919
Slc9a3Mouse1,2-dimethylhydrazine decreases expressionEXP 64804641 and 2-Dimethylhydrazine results in decreased expression of SLC9A3 mRNACTDPMID:22206623
Slc9a3Mouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of SLC9A3 mRNACTDPMID:26377647
Slc9a3Mouse2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOSLC9A3 (Homo sapiens)6480464[[Defoliants and Chemical results in increased abundance of Agent Orange] which results in increased abundance of Tetrachlorodibenzodioxin] which results in decreased methylation of SLC9A3 geneCTDPMID:33849548
Slc9a3Mouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISOSlc9a3 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of SLC9A3 mRNACTDPMID:32109520
Slc9a3Mouse2,3,7,8-Tetrachlorodibenzofuran increases expressionISOSlc9a3 (Rattus norvegicus)64804642 more ...CTDPMID:32109520
Slc9a3Mouse3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine multiple interactionsISOSlc9a3 (Rattus norvegicus)6480464[piperine co-treated with Cimetidine co-treated with Pyruvates] inhibits the reaction [Puromycin Aminonucleoside results in decreased expression of SLC9A3 protein]CTDPMID:12806184
Slc9a3Mouse3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine decreases expressionISOSlc9a3 (Rattus norvegicus)6480464Puromycin Aminonucleoside results in decreased expression of SLC9A3 proteinCTDPMID:15075188
Slc9a3Mouse3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine affects expressionISOSlc9a3 (Rattus norvegicus)6480464Puromycin Aminonucleoside affects the expression of SLC9A3 proteinCTDPMID:12191963
Slc9a3Mouse4,4'-sulfonyldiphenol multiple interactionsISOSLC9A3 (Homo sapiens)6480464[bisphenol S co-treated with Fulvestrant] results in decreased methylation of SLC9A3 geneCTDPMID:31601247
Slc9a3Mouse4,4'-sulfonyldiphenol decreases methylationISOSLC9A3 (Homo sapiens)6480464bisphenol S results in decreased methylation of SLC9A3 geneCTDPMID:31601247
Slc9a3Mouse4-hydroxyphenyl retinamide increases expressionEXP 6480464Fenretinide results in increased expression of SLC9A3 mRNACTDPMID:28973697
Slc9a3Mouse5-aza-2'-deoxycytidine increases expressionISOSLC9A3 (Homo sapiens)6480464Decitabine results in increased expression of SLC9A3 mRNACTDPMID:21856257
Slc9a3Mouse5-fluorouracil decreases expressionISOSLC9A3 (Homo sapiens)6480464Fluorouracil results in decreased expression of SLC9A3 mRNACTDPMID:34151400
Slc9a3Mouseacrylamide decreases expressionISOSlc9a3 (Rattus norvegicus)6480464Acrylamide results in decreased expression of SLC9A3 mRNACTDPMID:28959563
Slc9a3Mouseacrylamide decreases expressionISOSLC9A3 (Homo sapiens)6480464Acrylamide results in decreased expression of SLC9A3 mRNACTDPMID:32763439
Slc9a3Mousealdosterone multiple interactionsEXP 6480464AGT protein affects the reaction [SLC9A3 gene mutant form results in increased abundance of Aldosterone]CTDPMID:26564064
Slc9a3Mousealdosterone increases abundanceEXP 6480464SLC9A3 gene mutant form results in increased abundance of AldosteroneCTDPMID:26564064
Slc9a3Mouseall-trans-retinoic acid multiple interactionsEXP 6480464[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of SLC9A3 mRNACTDPMID:36189433

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Biological Process
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Original Reference(s)
Slc9a3Mousecircadian rhythm  ISOSlc9a3 (Rattus norvegicus)9068941 RGDPMID:15780093 and REF_RGD_ID:1581376
Slc9a3Mousepotassium ion transmembrane transport involved_inIBAPANTHER:PTN008493947 more ...2290270 GO_CentralGO_REF:0000033
Slc9a3Mouseproton transmembrane transport involved_inIEAInterPro:IPR006153 and InterPro:IPR0184222290270 InterProGO_REF:0000002
Slc9a3Mousereceptor-mediated endocytosis  ISOSlc9a3 (Rattus norvegicus)9068941 RGDPMID:15113744 and REF_RGD_ID:1581379
Slc9a3Mousereceptor-mediated endocytosis involved_inISOSlc9a3 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Slc9a3Mouseregulation of intracellular pH involved_inISOUniProtKB:P487642290270 GO_CentralGO_REF:0000119
Slc9a3Mouseregulation of intracellular pH involved_inIBAPANTHER:PTN008493947 more ...2290270 GO_CentralGO_REF:0000033
Slc9a3Mouseregulation of pH  ISOSlc9a3 (Rattus norvegicus)9068941 RGDPMID:15265811 and REF_RGD_ID:1625070
Slc9a3Mouseregulation of pH acts_upstream_of_or_withinIDA 2290270 PMID:10666043MGIPMID:10666043
Slc9a3Mouseregulation of pH involved_inISOSlc9a3 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Slc9a3Mouseregulation of sodium ion transport  ISOSlc9a3 (Rattus norvegicus)9068941 RGDPMID:15238256 and REF_RGD_ID:1581378
Slc9a3Mouseregulation of sodium ion transport involved_inISOSlc9a3 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Slc9a3Mouseresponse to glucocorticoid  ISOSlc9a3 (Rattus norvegicus)9068941 RGDPMID:17095646 and REF_RGD_ID:1625671
Slc9a3Mousesodium ion import across plasma membrane involved_inISOUniProtKB:P487642290270 GO_CentralGO_REF:0000119
Slc9a3Mousesodium ion import across plasma membrane involved_inISSUniProtKB:P487642290270 UniProtGO_REF:0000024
Slc9a3Mousesodium ion import across plasma membrane involved_inIBAPANTHER:PTN008493947 more ...2290270 GO_CentralGO_REF:0000033
Slc9a3Mousesodium ion transport  ISOSlc9a3 (Rattus norvegicus)9068941 RGDPMID:11880335 and REF_RGD_ID:737665
Slc9a3Mousesodium ion transport acts_upstream_of_or_withinIDA 2290270 PMID:10666043MGIPMID:10666043
Slc9a3Mousesodium ion transport involved_inISOSlc9a3 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
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Cellular Component
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Original Reference(s)
Slc9a3Mouseapical plasma membrane  ISOSlc9a3 (Rattus norvegicus)9068941 RGDPMID:12907430 and REF_RGD_ID:1581380
Slc9a3Mouseapical plasma membrane located_inIDA 2290270 PMID:12169661MGIPMID:12169661
Slc9a3Mouseapical plasma membrane located_inISOSlc9a3 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Slc9a3Mouseapical plasma membrane is_active_inIBAPANTHER:PTN002561299 more ...2290270 GO_CentralGO_REF:0000033
Slc9a3Mousebrush border  ISOSlc9a3 (Rattus norvegicus)9068941 RGDPMID:11880335 and REF_RGD_ID:737665
Slc9a3Mousebrush border located_inISOSlc9a3 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Slc9a3Mousebrush border membrane located_inISOSlc9a3 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Slc9a3Mousebrush border membrane located_inIDA 2290270 PMID:16141316UniProtPMID:16141316
Slc9a3Mousebrush border membrane is_active_inIBAPANTHER:PTN002561299 more ...2290270 GO_CentralGO_REF:0000033
Slc9a3Mousebrush border membrane  ISOSlc9a3 (Rattus norvegicus)9068941 RGDPMID:15238256 and REF_RGD_ID:1581378
Slc9a3Mouseearly endosome located_inISOUniProtKB:P487642290270 GO_CentralGO_REF:0000119
Slc9a3Mouseearly endosome membrane located_inIEAUniProtKB-SubCell:SL-00932290270 UniProtGO_REF:0000044
Slc9a3Mouseextracellular exosome located_inISOUniProtKB:P487642290270 GO_CentralGO_REF:0000119
Slc9a3Mouseplasma membrane is_active_inIBAPANTHER:PTN008493947 more ...2290270 GO_CentralGO_REF:0000033
Slc9a3Mouseplasma membrane located_inISOUniProtKB:P487642290270 GO_CentralGO_REF:0000119
Slc9a3Mouseplasma membrane located_inIDA 2290270 PMID:16141316UniProtPMID:16141316
Slc9a3Mouserecycling endosome membrane located_inIEAUniProtKB-SubCell:SL-02312290270 UniProtGO_REF:0000044
Slc9a3Mouserecycling endosome membrane located_inISOUniProtKB:P487642290270 GO_CentralGO_REF:0000119
Slc9a3Mouserecycling endosome membrane located_inISOSlc9a3 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Slc9a3Mousevesicle located_inIDA 2290270 PMID:23863468MGIPMID:23863468
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Molecular Function
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Original Reference(s)
Slc9a3Mouseidentical protein binding enablesISOUniProtKB:P487642290270 GO_CentralGO_REF:0000119
Slc9a3Mouseidentical protein binding enablesISSUniProtKB:P487642290270 UniProtGO_REF:0000024
Slc9a3MousePDZ domain binding enablesIDA 2290270 PMID:16141316UniProtPMID:16141316
Slc9a3Mousephosphatidylinositol binding enablesISOUniProtKB:P487642290270 GO_CentralGO_REF:0000119
Slc9a3Mousephosphatidylinositol binding enablesISSUniProtKB:P487642290270 UniProtGO_REF:0000024
Slc9a3Mousepotassium:proton antiporter activity enablesIBAPANTHER:PTN008493947 more ...2290270 GO_CentralGO_REF:0000033
Slc9a3Mouseprotein binding  ISOActb (Rattus norvegicus)9068941 RGDPMID:24657527 and REF_RGD_ID:9587756
Slc9a3Mouseprotein binding enablesISOUniProtKB:Q9QX749068941PMID:20080968IntActPMID:20080968 and REF_RGD_ID:329955545
Slc9a3Mouseprotein binding enablesISOUniProtKB:Q96L929068941 PMID:25851603UniProtPMID:25851603
Slc9a3Mouseprotein binding enablesISOUniProtKB:Q996539068941 PMID:35613257UniProtPMID:35613257
Slc9a3Mouseprotein binding enablesISOUniProtKB:O550439068941PMID:20080968IntActPMID:20080968 and REF_RGD_ID:329955545
Slc9a3Mouseprotein binding enablesISOUniProtKB:Q9QX749068941PMID:16293618IntActPMID:16293618 and REF_RGD_ID:8553686
Slc9a3Mouseprotein binding enablesISOUniProtKB:Q810D19068941PMID:12576672IntActPMID:12576672 and REF_RGD_ID:1299552
Slc9a3Mouseprotein binding enablesISOUniProtKB:Q6P0Q89068941 PMID:16159897IntActPMID:16159897
Slc9a3Mouseprotein binding enablesISOUniProtKB:Q86UT59068941 PMID:19088451UniProtPMID:19088451
Slc9a3Mousesodium:proton antiporter activity enablesISOSlc9a3 (Rattus norvegicus)2290270 GO_CentralGO_REF:0000096
Slc9a3Mousesodium:proton antiporter activity enablesIDA 2290270 PMID:10666043MGIPMID:10666043
Slc9a3Mousesodium:proton antiporter activity enablesISOUniProtKB:P487642290270 GO_CentralGO_REF:0000119
Slc9a3Mousesodium:proton antiporter activity enablesIBAPANTHER:PTN008493947 more ...2290270 GO_CentralGO_REF:0000033
Slc9a3Mousesodium:proton antiporter activity  ISOSlc9a3 (Rattus norvegicus)9068941 RGDPMID:11880335 more ...
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Imported Annotations - KEGG (archival)

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Original Reference(s)
Slc9a3Mousebile acid transport pathway  IEA 6907045 KEGGmmu:04976

Imported Annotations - PID (archival)

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Original Reference(s)
Slc9a3Mouseendothelin signaling pathway  ISOSLC9A3 (Homo sapiens)6484113 PIDPID:200005

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#
Reference Title
Reference Citation
1. Altered expression of Na(+)/H(+) exchanger isoforms 1 and 3 in clipped and unclipped kidneys of a 2-kidney-1-clip Goldblatt model of hypertension. Khan I, etal., Nephron 2002 Oct;92(2):346-55.
2. Acute and Chronic Regulation of the Renal Na/H(+) Exchanger NHE3 in Rats with STZ-Induced Diabetes mellitus. Klisic J, etal., Nephron Physiol. 2005 Oct 19;102(2):p27-p35.
3. Angiotensin II clamp prevents the second step in renal apical NHE3 internalization during acute hypertension. Leong PK, etal., Am J Physiol Renal Physiol 2002 Nov;283(5):F1142-50.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Rosiglitazone regulates ENaC and Na-K-2Cl cotransporter (NKCC2) abundance in the obese Zucker rat. Riazi S, etal., Am J Nephrol. 2006;26(3):245-57. Epub 2006 Jun 2.
14. Molecular variants of the sodium/hydrogen exchanger type 3 gene and essential hypertension. Zhu H, etal., J Hypertens. 2004 Jul;22(7):1269-75.
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PMID:8402911   PMID:8824815   PMID:9119405   PMID:9502765   PMID:9590530   PMID:9662405   PMID:10349636   PMID:10362780   PMID:10428871   PMID:10444585   PMID:10484528   PMID:10506152  
PMID:10666041   PMID:10666043   PMID:10772659   PMID:10822268   PMID:10841524   PMID:11042159   PMID:11076861   PMID:11099500   PMID:11139574   PMID:11158268   PMID:11208547   PMID:11217851  
PMID:11358967   PMID:11457720   PMID:11553519   PMID:11698654   PMID:11705743   PMID:11960774   PMID:12169661   PMID:12176733   PMID:12370192   PMID:12582007   PMID:12690468   PMID:12842825  
PMID:12911544   PMID:14500765   PMID:14633135   PMID:14962844   PMID:15113744   PMID:15284023   PMID:15550620   PMID:15604231   PMID:15780093   PMID:16141072   PMID:16141073   PMID:16141316  
PMID:16144961   PMID:16251474   PMID:16410368   PMID:16690903   PMID:16825708   PMID:17016558   PMID:17347851   PMID:17395628   PMID:17580307   PMID:18046080   PMID:18407958   PMID:18467500  
PMID:18758809   PMID:18930060   PMID:19088451   PMID:19164484   PMID:19420731   PMID:19521566   PMID:19713718   PMID:19800338   PMID:19855135   PMID:20026617   PMID:20164375   PMID:20962002  
PMID:21106755   PMID:21191106   PMID:21252044   PMID:21415416   PMID:21430287   PMID:21561868   PMID:21873635   PMID:21937605   PMID:21947296   PMID:22073226   PMID:22358497   PMID:22683701  
PMID:23054255   PMID:23086913   PMID:23508938   PMID:23548792   PMID:23677982   PMID:23764894   PMID:23784542   PMID:23863468   PMID:24018950   PMID:24029465   PMID:24072680   PMID:24233434  
PMID:24297041   PMID:24928903   PMID:25271043   PMID:25377912   PMID:25480791   PMID:25925253   PMID:26098432   PMID:26242933   PMID:26258413   PMID:26377793   PMID:26744474   PMID:26786190  
PMID:26807585   PMID:27019864   PMID:27050757   PMID:27279487   PMID:27371534   PMID:27390324   PMID:27626380   PMID:27822917   PMID:27995414   PMID:28384194   PMID:28385297   PMID:28566500  
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Slc9a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391374,234,374 - 74,317,561 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1374,269,576 - 74,317,561 (+)EnsemblGRCm39 Ensembl
GRCm381374,086,255 - 74,169,442 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1374,121,457 - 74,169,442 (+)EnsemblGRCm38mm10GRCm38
MGSCv371374,258,963 - 74,303,512 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,587,517 - 74,632,066 (+)NCBIMGSCv36mm8
Celera1376,451,103 - 76,495,653 (+)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.15NCBI
SLC9A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385470,456 - 524,449 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5470,456 - 524,449 (-)EnsemblGRCh38hg38GRCh38
GRCh375470,571 - 524,564 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365526,425 - 577,447 (-)NCBINCBI36Build 36hg18NCBI36
Build 345526,424 - 577,447NCBI
Celera5570,966 - 620,781 (-)NCBICelera
Cytogenetic Map5p15.33NCBI
HuRef5460,638 - 510,183 (-)NCBIHuRef
CHM1_15472,597 - 524,559 (-)NCBICHM1_1
T2T-CHM13v2.05465,265 - 518,871 (-)NCBIT2T-CHM13v2.0
Slc9a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8130,953,215 - 30,996,209 (-)NCBIGRCr8
mRatBN7.2129,124,633 - 29,167,912 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,124,674 - 29,167,417 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx128,926,541 - 28,969,373 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0134,926,400 - 34,969,224 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,127,163 - 29,169,987 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0131,731,652 - 31,777,144 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl131,734,327 - 31,777,070 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0133,159,607 - 33,201,753 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4129,930,908 - 29,973,686 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1129,933,852 - 29,976,631 (-)NCBI
Celera127,776,582 - 27,819,219 (-)NCBICelera
Cytogenetic Map1p11NCBI
Slc9a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955504228,049 - 260,650 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955504226,192 - 260,632 (-)NCBIChiLan1.0ChiLan1.0
LOC100988373
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28112,257,212 - 112,299,973 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110112,258,794 - 112,305,293 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05444,720 - 500,121 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15597,897 - 646,108 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5597,897 - 647,464 (-)Ensemblpanpan1.1panPan2
SLC9A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13411,748,556 - 11,785,209 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3411,748,175 - 11,785,786 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3416,258,013 - 16,298,999 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03411,649,118 - 11,689,897 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3411,649,113 - 11,690,798 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13411,699,849 - 11,740,579 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03411,680,359 - 11,721,422 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03411,890,462 - 11,930,512 (+)NCBIUU_Cfam_GSD_1.0
Slc9a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213244,802,254 - 244,839,418 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936815963,715 - 999,280 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936815963,715 - 999,280 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC9A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1679,666,825 - 79,700,658 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11679,625,555 - 79,704,084 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103214902
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.14362,417 - 408,113 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl4365,135 - 408,033 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606427,500,607 - 27,511,358 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc9a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624751256,305 - 291,178 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624751254,373 - 290,218 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Slc9a3
2829 total Variants

Predicted Target Of
Summary Value
Count of predictions:141
Count of miRNA genes:130
Interacting mature miRNAs:136
Transcripts:ENSMUST00000036208
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 27 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1368053999102054119Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse

1 to 10 of 27 rows
AI930210  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381374,169,322 - 74,169,404UniSTSGRCm38
MGSCv371374,306,770 - 74,306,852UniSTSGRCm37
Celera1376,498,911 - 76,498,993UniSTS
Cytogenetic Map13C1UniSTS
cM Map1343.0UniSTS
Whitehead/MRC_RH13667.43UniSTS
Slc9a3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13C1UniSTS
cM Map1343.0UniSTS
Slc9a3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13C1UniSTS







Ensembl Acc Id: ENSMUST00000036208   ⟹   ENSMUSP00000038142
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,269,634 - 74,314,183 (+)Ensembl
GRCm38.p6 Ensembl1374,121,515 - 74,166,064 (+)Ensembl
Ensembl Acc Id: ENSMUST00000221410
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,269,576 - 74,279,010 (+)Ensembl
GRCm38.p6 Ensembl1374,121,457 - 74,130,891 (+)Ensembl
Ensembl Acc Id: ENSMUST00000221703   ⟹   ENSMUSP00000152682
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,269,634 - 74,317,561 (+)Ensembl
GRCm38.p6 Ensembl1374,121,515 - 74,169,442 (+)Ensembl
Ensembl Acc Id: ENSMUST00000225423   ⟹   ENSMUSP00000153255
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,269,634 - 74,315,282 (+)Ensembl
GRCm38.p6 Ensembl1374,121,515 - 74,167,163 (+)Ensembl
RefSeq Acc Id: NM_001081060   ⟹   NP_001074529
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,269,532 - 74,317,561 (+)NCBI
GRCm381374,121,413 - 74,169,441 (+)NCBI
MGSCv371374,258,963 - 74,303,512 (+)RGD
Celera1376,451,103 - 76,495,653 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006517021   ⟹   XP_006517084
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,234,374 - 74,317,561 (+)NCBI
GRCm381374,086,255 - 74,169,442 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006517022   ⟹   XP_006517085
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,269,484 - 74,317,561 (+)NCBI
GRCm381374,121,367 - 74,169,442 (+)NCBI
Sequence:
1 to 11 of 11 rows
Protein RefSeqs NP_001074529 (Get FASTA)   NCBI Sequence Viewer  
  XP_006517084 (Get FASTA)   NCBI Sequence Viewer  
  XP_006517085 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD30296 (Get FASTA)   NCBI Sequence Viewer  
  BAC28362 (Get FASTA)   NCBI Sequence Viewer  
  EDL37085 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000038142
  ENSMUSP00000038142.7
  ENSMUSP00000152682
  ENSMUSP00000152682.2
GenBank Protein G3X939 (Get FASTA)   NCBI Sequence Viewer  
1 to 11 of 11 rows
RefSeq Acc Id: NP_001074529   ⟸   NM_001081060
- Peptide Label: precursor
- UniProtKB: Q8BZU0 (UniProtKB/Swiss-Prot),   G3X939 (UniProtKB/Swiss-Prot),   A0A286YD40 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517084   ⟸   XM_006517021
- Peptide Label: isoform X1
- UniProtKB: A0A286YD40 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517085   ⟸   XM_006517022
- Peptide Label: isoform X2
- UniProtKB: Q8BZU0 (UniProtKB/Swiss-Prot),   G3X939 (UniProtKB/Swiss-Prot),   A0A286YD40 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000153255   ⟸   ENSMUST00000225423
Ensembl Acc Id: ENSMUSP00000038142   ⟸   ENSMUST00000036208
Name Modeler Protein Id AA Range Protein Structure
AF-G3X939-F1-model_v2 AlphaFold G3X939 1-829 view protein structure

RGD ID:8680826
Promoter ID:EPDNEW_M18444
Type:multiple initiation site
Name:Slc9a3_1
Description:Mus musculus solute carrier family 9 (sodium/hydrogen exchanger),member 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381374,121,415 - 74,121,475EPDNEW
RGD ID:6824405
Promoter ID:MM_KWN:14682
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:NM_001081060
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361374,258,661 - 74,259,161 (+)MPROMDB
RGD ID:6824407
Promoter ID:MM_KWN:14684
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:UC007RET.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361374,300,811 - 74,302,112 (+)MPROMDB


1 to 27 of 27 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000036123 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000036208 ENTREZGENE
  ENSMUST00000036208.7 UniProtKB/Swiss-Prot
  ENSMUST00000221703 ENTREZGENE
  ENSMUST00000221703.2 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.140.1330 UniProtKB/Swiss-Prot
InterPro Cation/H_exchanger UniProtKB/Swiss-Prot
  Cation/H_exchanger_CPA1 UniProtKB/Swiss-Prot
  Na/H_exchanger_3/5 UniProtKB/Swiss-Prot
  NaH_exchanger UniProtKB/Swiss-Prot
  Reg_factor_effector_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:105243 UniProtKB/Swiss-Prot
MGD MGI:105064 ENTREZGENE
NCBI Gene Slc9a3 ENTREZGENE
PANTHER PTHR10110 UniProtKB/Swiss-Prot
  SODIUM/HYDROGEN EXCHANGER 3 UniProtKB/Swiss-Prot
Pfam Na_H_Exchanger UniProtKB/Swiss-Prot
PhenoGen Slc9a3 PhenoGen
PRINTS NAHEXCHNGR UniProtKB/Swiss-Prot
  NAHEXCHNGR3 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF55136 UniProtKB/Swiss-Prot
UniProt A0A286YD40 ENTREZGENE, UniProtKB/TrEMBL
  G3X939 ENTREZGENE
  Q8BZU0 ENTREZGENE
  Q9WUJ5_MOUSE UniProtKB/TrEMBL
  SL9A3_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8BZU0 UniProtKB/Swiss-Prot
1 to 27 of 27 rows