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ONTOLOGY REPORT - ANNOTATIONS

Term:nBAF complex
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Accession:GO:0071565 term browser browse the term
Definition:A SWI/SNF-type complex that is found in post-mitotic neurons, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, DPF1/BAF45B, DPF3/BAF45C, ACTL6B/BAF53B genes. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.


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nBAF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARID1A AT-rich interaction domain 1A part_of IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:84,049,729...84,124,302
Ensembl chr 6:84,049,087...84,123,349 		JBrowse link
G ARID1B AT-rich interaction domain 1B part_of IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:9,791,627...10,227,381
Ensembl chr 1:9,791,633...10,227,502 		JBrowse link
G DPF1 double PHD fingers 1 part_of ISO (MGI:3775125|PMID:17640523), (PMID:23785148) MGI PMID:17640523 PMID:23785148 MGI:3775125 NCBI chr 6:47,142,006...47,155,340
Ensembl chr 6:47,142,702...47,155,346 		JBrowse link
G DPF2 double PHD fingers 2 part_of IBA GO_Central GO_REF:0000033 NCBI chr 2:6,870,331...6,886,548
Ensembl chr 2:6,870,332...6,886,467 		JBrowse link
G DPF3 double PHD fingers 3 part_of IEA Ensembl GO_REF:0000107 NCBI chr 7:95,974,422...96,254,354
Ensembl chr 7:95,982,462...96,254,318 		JBrowse link
G SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 part_of ISO (MGI:3775125|PMID:17640523), (PMID:23785148) UniProt PMID:17640523 PMID:23785148 MGI:3775125 NCBI chr 1:219,624,773...219,815,438
Ensembl chr 1:219,573,535...219,815,421 		JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 part_of ISO (MGI:3775125|PMID:17640523), (PMID:23785148) MGI PMID:17640523 PMID:23785148 MGI:3775125 NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,295 		JBrowse link
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 part_of IEA
IBA		 Ensembl
TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr14:49,874,981...49,906,043
Ensembl chr14:49,874,984...49,906,048 		JBrowse link
G SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr13:30,409,979...30,576,270
Ensembl chr13:30,409,983...30,601,441 		JBrowse link
G SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 part_of IEA
IBA		 Ensembl
TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:21,563,426...21,586,790
Ensembl chr 5:21,563,400...21,586,737 		JBrowse link
G SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 part_of ISO (MGI:3775125|PMID:17640523) UniProt PMID:17640523 MGI:3775125 NCBI chr 5:15,992,348...16,005,778
Ensembl chr 5:15,992,260...16,005,778 		JBrowse link
G SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 part_of IEA Ensembl GO_REF:0000107 NCBI chr18:5,958,466...5,989,120
Ensembl chr18:5,958,506...5,989,114 		JBrowse link
G SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr12:21,784,410...21,807,170
Ensembl chr12:21,786,897...21,807,162 		JBrowse link
G SS18L1 SS18L1 subunit of BAF chromatin remodeling complex part_of IEA Ensembl GO_REF:0000107 NCBI chr17:61,571,619...61,598,104
Ensembl chr17:61,571,614...61,598,099 		JBrowse link
G TFR2 transferrin receptor 2 part_of ISO (MGI:3775125|PMID:17640523), (PMID:23785148) UniProt PMID:17640523 PMID:23785148 MGI:3775125 NCBI chr 3:8,554,322...8,568,774
Ensembl chr 3:8,539,320...8,578,763 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18687
    protein-containing complex 6005
      nuclear protein-containing complex 1244
        SWI/SNF superfamily-type complex 95
          nBAF complex 15
Path 2
Term Annotations click to browse term
  cellular_component 18687
    cellular anatomical entity 18466
      organelle 12444
        non-membrane-bounded organelle 4567
          intracellular non-membrane-bounded organelle 4565
            chromosome 1292
              chromatin 780
                SWI/SNF superfamily-type complex 95
                  nBAF complex 15
paths to the root