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ONTOLOGY REPORT - ANNOTATIONS


Term:SWI/SNF superfamily-type complex
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Accession:GO:0070603 term browser browse the term
Definition:A protein complex that contains an ortholog of the Saccharomyces ATPase Swi2/Snf2 as one of the catalytic subunit components (ATPase) and mediates assembly of nucleosomes, changes to the spacing or structure of nucleosomes, or some combination of those activities in a manner that requires ATP.
Synonyms:exact_synonym: BAF-type complex
 related_synonym: SWI-SNF global transcription activator complex;   SWI/SNF-type complex;   SWI2/SNF2 superfamily ATP-dependent chromatin remodeling complex
 alt_id: GO:0090544


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brahma complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636
JBrowse link
G Arid1b AT-rich interaction domain 1B IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:45,923,119...46,232,301
Ensembl chr 1:45,923,222...46,234,874
JBrowse link
G LOC103694876 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:13,679,955...13,702,821
Ensembl chr20:13,680,716...13,704,931
JBrowse link
CERF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cecr2 CECR2, histone acetyl-lysine reader ISO
IBA
(PMID:15640247)
PMID:21873635
RGD PMID:15640247, PMID:21873635 RGD:13792537 NCBI chr 4:153,217,521...153,327,153
Ensembl chr 4:153,217,782...153,322,564
JBrowse link
G Smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 ISO (PMID:15640247) RGD PMID:15640247 NCBI chr  X:134,634,651...134,719,503
Ensembl chr  X:134,647,703...134,719,097
JBrowse link
CHRAC term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07027368.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:26,772,096...26,772,732 JBrowse link
G Baz1a bromodomain adjacent to zinc finger domain, 1A ISO (PMID:10880450) RGD PMID:10880450 NCBI chr 6:75,793,223...75,873,854
Ensembl chr 6:75,793,960...75,874,235
JBrowse link
G Chrac1 chromatin accessibility complex subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:114,323,542...114,326,930
Ensembl chr 7:114,323,542...114,326,930
JBrowse link
G LOC100362333 DNA-directed DNA polymerase epsilon 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:118,816,053...118,816,725
Ensembl chr 7:118,816,218...118,816,655
Ensembl chr 5:118,816,218...118,816,655
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:78,380,813...78,384,047
Ensembl chr 5:78,380,816...78,384,047
JBrowse link
Ino80 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A ISO (PMID:18026119), (PMID:21303910) RGD PMID:18026119, PMID:21303910 NCBI chr 2:119,112,776...119,128,870
Ensembl chr 2:119,112,513...119,129,751
JBrowse link
G Actr5 actin related protein 5 ISO
IBA
(PMID:18026119), (PMID:21303910)
PMID:21873635
RGD PMID:18026119, PMID:21303910, PMID:21873635 RGD:13792537 NCBI chr 3:155,118,567...155,132,073
Ensembl chr 3:155,119,042...155,131,829
JBrowse link
G Actr8 actin related protein 8 ISO
IBA
(PMID:18026119), (PMID:21303910)
PMID:21873635
RGD PMID:18026119, PMID:21303910, PMID:21873635 RGD:13792537 NCBI chr16:6,047,977...6,062,586
Ensembl chr16:6,048,004...6,062,550
JBrowse link
G Ino80 INO80 complex ATPase subunit ISO
IBA
(PMID:18026119), (PMID:21303910)
PMID:21873635
RGD PMID:18026119, PMID:21303910, PMID:21873635 RGD:13792537 NCBI chr 3:111,186,371...111,266,542
Ensembl chr 3:111,187,711...111,266,542
JBrowse link
G Ino80b INO80 complex subunit B ISO
IBA
(PMID:21303910)
PMID:21873635
RGD PMID:21303910, PMID:21873635 RGD:13792537 NCBI chr 4:113,954,612...113,957,774
Ensembl chr 4:113,954,613...113,957,774
JBrowse link
G Ino80c INO80 complex subunit C ISO
IBA
(PMID:21303910)
PMID:21873635
RGD PMID:21303910, PMID:21873635 RGD:13792537 NCBI chr18:15,995,005...16,009,639
Ensembl chr18:15,995,000...16,009,710
JBrowse link
G Ino80e INO80 complex subunit E ISO
IBA
(PMID:21303910)
PMID:21873635
RGD PMID:21303910, PMID:21873635 RGD:13792537 NCBI chr 1:198,287,489...198,298,076
Ensembl chr 1:198,287,490...198,298,076
JBrowse link
G Mcrs1 microspherule protein 1 ISO (PMID:21303910) RGD PMID:21303910 NCBI chr 7:140,910,420...140,919,234
Ensembl chr 7:140,910,423...140,919,234
JBrowse link
G Nfrkb nuclear factor related to kappa B binding protein colocalizes_with ISO
IBA
(PMID:21303910)
PMID:21873635
(PMID:18922472)
RGD PMID:18922472, PMID:21303910, PMID:21873635 RGD:13792537 NCBI chr 8:32,530,412...32,561,955
Ensembl chr 8:32,530,412...32,561,955
JBrowse link
G RGD1564855 similar to RuvB-like protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:1,854,580...1,856,333
Ensembl chr  X:1,854,751...1,856,258
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 ISO
IBA
(PMID:18026119), (PMID:21303910)
PMID:21873635
RGD PMID:18026119, PMID:21303910, PMID:21873635 RGD:13792537 NCBI chr 4:120,411,917...120,447,458
Ensembl chr 4:120,411,991...120,447,455
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 ISO
IBA
(PMID:18026119), (PMID:21303910)
PMID:21873635
RGD PMID:18026119, PMID:21303910, PMID:21873635 RGD:13792537 NCBI chr 1:101,413,766...101,426,970
Ensembl chr 1:101,413,766...101,426,852
JBrowse link
G Tfpt TCF3 fusion partner IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:21303910)
Ensembl
RGD
PMID:21303910, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 1:64,162,525...64,172,307
Ensembl chr 1:64,162,672...64,172,470
JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 colocalizes_with ISO (PMID:21303910)
(PMID:18922472)
RGD PMID:18922472, PMID:21303910 NCBI chr13:60,568,102...60,603,812
Ensembl chr13:60,545,635...60,603,811
JBrowse link
G Yy1 YY1 transcription factor ISO (PMID:18026119), (PMID:21303910) RGD PMID:18026119, PMID:21303910 NCBI chr 6:132,702,443...132,726,848
Ensembl chr 6:132,702,448...132,727,046
JBrowse link
ISWI-type complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cecr2 CECR2, histone acetyl-lysine reader ISO PR:Q91ZW3 (MGI:5490456|PMID:22154806) RGD PMID:22154806 MGI:5490456 NCBI chr 4:153,217,521...153,327,153
Ensembl chr 4:153,217,782...153,322,564
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO UniProtKB:E9Q2Z1 (MGI:5490456|PMID:22154806) RGD PMID:22154806 MGI:5490456 NCBI chr19:30,936,703...30,969,454
Ensembl chr19:30,936,703...30,969,454
JBrowse link
nBAF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6b actin-like 6B ISS
ISO
GO_REF:0000024
(MGI:3775125|PMID:17640523), (MGI:5504306|PMID:23785148)
UniProt
RGD
PMID:17640523, PMID:23785148 GO_REF:0000024, MGI:3775125, MGI:5504306 NCBI chr12:22,194,595...22,211,107
Ensembl chr12:22,194,618...22,211,080
JBrowse link
G Arid1a AT-rich interaction domain 1A IBA
ISO
PMID:21873635
(MGI:3775125|PMID:17640523)
RGD PMID:17640523, PMID:21873635 MGI:3775125, RGD:13792537 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636
JBrowse link
G Arid1b AT-rich interaction domain 1B IBA
ISO
PMID:21873635
(MGI:5504306|PMID:23785148)
RGD PMID:23785148, PMID:21873635 MGI:5504306, RGD:13792537 NCBI chr 1:45,923,119...46,232,301
Ensembl chr 1:45,923,222...46,234,874
JBrowse link
G Dpf1 double PHD fingers 1 IEA
ISO
IBA
ISS
GO_REF:0000107
(MGI:3775125|PMID:17640523), (MGI:5504306|PMID:23785148)
PMID:21873635
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:17640523, PMID:23785148, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:3775125, MGI:5504306, RGD:13792537 NCBI chr 1:87,248,448...87,258,070
Ensembl chr 1:87,248,489...87,258,070
JBrowse link
G Dpf2 double PHD fingers 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:221,253,764...221,269,043
Ensembl chr 1:221,253,747...221,269,042
JBrowse link
G Dpf3 double PHD fingers 3 IBA
ISO
PMID:21873635
(MGI:3775125|PMID:17640523), (MGI:5504306|PMID:23785148)
RGD PMID:17640523, PMID:23785148, PMID:21873635 MGI:3775125, MGI:5504306, RGD:13792537 NCBI chr 6:106,660,569...106,971,310
Ensembl chr 6:106,721,349...106,971,250
JBrowse link
G LOC103694876 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 ISO (MGI:3775125|PMID:17640523), (MGI:5504306|PMID:23785148) RGD PMID:17640523, PMID:23785148 MGI:3775125, MGI:5504306 NCBI chr 1:244,615,811...244,783,736
Ensembl chr 1:244,615,821...244,782,706
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISS
ISO
GO_REF:0000024
(MGI:3775125|PMID:17640523), (MGI:5504306|PMID:23785148)
UniProt
RGD
PMID:17640523, PMID:23785148 GO_REF:0000024, MGI:3775125, MGI:5504306 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 IBA
ISO
PMID:21873635
(MGI:3775125|PMID:17640523)
RGD PMID:17640523, PMID:21873635 MGI:3775125, RGD:13792537 NCBI chr20:13,679,955...13,702,821
Ensembl chr20:13,680,716...13,704,931
JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 IBA
ISO
PMID:21873635
(MGI:3775125|PMID:17640523), (MGI:5504306|PMID:23785148)
RGD PMID:17640523, PMID:23785148, PMID:21873635 MGI:3775125, MGI:5504306, RGD:13792537 NCBI chr 8:118,206,678...118,326,264
Ensembl chr 8:118,206,698...118,325,537
JBrowse link
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 IBA
ISO
PMID:21873635
(MGI:3775125|PMID:17640523), (MGI:5504306|PMID:23785148)
RGD PMID:17640523, PMID:23785148, PMID:21873635 MGI:3775125, MGI:5504306, RGD:13792537 NCBI chr 7:2,875,898...2,905,463
Ensembl chr 7:2,875,909...2,904,453
JBrowse link
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 ISO (MGI:3775125|PMID:17640523) RGD PMID:17640523 MGI:3775125 NCBI chr 7:141,355,623...141,366,725
Ensembl chr 7:141,355,994...141,366,732
JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 ISO (MGI:3775125|PMID:17640523), (MGI:5504306|PMID:23785148) RGD PMID:17640523, PMID:23785148 MGI:3775125, MGI:5504306 NCBI chr 4:7,076,710...7,108,334
Ensembl chr 4:7,076,759...7,108,328
JBrowse link
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 ISO (MGI:3775125|PMID:17640523) RGD PMID:17640523 MGI:3775125 NCBI chr10:87,116,827...87,138,890
Ensembl chr10:87,116,827...87,137,965
JBrowse link
G Ss18l1 SS18L1 subunit of BAF chromatin remodeling complex ISO (MGI:5504306|PMID:23785148) RGD PMID:23785148 MGI:5504306 NCBI chr 3:175,426,754...175,445,222
Ensembl chr 3:175,426,752...175,445,222
JBrowse link
npBAF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A ISO (PMID:18816825)
(MGI:3775125|PMID:17640523), (MGI:5504306|PMID:23785148)
RGD PMID:17640523, PMID:18816825, PMID:23785148 MGI:3775125, MGI:5504306 NCBI chr 2:119,112,776...119,128,870
Ensembl chr 2:119,112,513...119,129,751
JBrowse link
G Arid1a AT-rich interaction domain 1A ISO (MGI:3775125|PMID:17640523) RGD PMID:17640523 MGI:3775125 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636
JBrowse link
G LOC103694876 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Phf10 PHD finger protein 10 ISS
ISO
IEA
GO_REF:0000024
(MGI:3775125|PMID:17640523)
GO_REF:0000002
UniProt
RGD
InterPro
PMID:17640523 GO_REF:0000002, GO_REF:0000024, MGI:3775125 NCBI chr 1:56,951,516...56,967,893
Ensembl chr 1:56,951,518...56,967,895
JBrowse link
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 ISO (MGI:3775125|PMID:17640523), (MGI:5504306|PMID:23785148) RGD PMID:17640523, PMID:23785148 MGI:3775125, MGI:5504306 NCBI chr 1:244,615,811...244,783,736
Ensembl chr 1:244,615,821...244,782,706
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO
IEA
ISS
(PMID:18816825)
(MGI:3775125|PMID:17640523), (MGI:5504306|PMID:23785148)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:17640523, PMID:18816825, PMID:23785148 GO_REF:0000024, GO_REF:0000107, MGI:3775125, MGI:5504306 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 IBA
ISO
PMID:21873635
(MGI:3775125|PMID:17640523)
RGD PMID:17640523, PMID:21873635 MGI:3775125, RGD:13792537 NCBI chr20:13,679,955...13,702,821
Ensembl chr20:13,680,716...13,704,931
JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 IBA
ISO
PMID:21873635
(MGI:3775125|PMID:17640523), (MGI:5504306|PMID:23785148)
RGD PMID:17640523, PMID:23785148, PMID:21873635 MGI:3775125, MGI:5504306, RGD:13792537 NCBI chr 8:118,206,678...118,326,264
Ensembl chr 8:118,206,698...118,325,537
JBrowse link
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 IBA
ISO
PMID:21873635
(MGI:3775125|PMID:17640523), (MGI:5504306|PMID:23785148)
RGD PMID:17640523, PMID:23785148, PMID:21873635 MGI:3775125, MGI:5504306, RGD:13792537 NCBI chr 7:2,875,898...2,905,463
Ensembl chr 7:2,875,909...2,904,453
JBrowse link
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 ISO (MGI:3775125|PMID:17640523) RGD PMID:17640523 MGI:3775125 NCBI chr 7:141,355,623...141,366,725
Ensembl chr 7:141,355,994...141,366,732
JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 ISO (PMID:18816825)
(MGI:3775125|PMID:17640523), (MGI:5504306|PMID:23785148)
RGD PMID:17640523, PMID:18816825, PMID:23785148 MGI:3775125, MGI:5504306 NCBI chr 4:7,076,710...7,108,334
Ensembl chr 4:7,076,759...7,108,328
JBrowse link
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 ISO (MGI:3775125|PMID:17640523) RGD PMID:17640523 MGI:3775125 NCBI chr10:87,116,827...87,138,890
Ensembl chr10:87,116,827...87,137,965
JBrowse link
G Ss18 SS18 subunit of BAF chromatin remodeling complex ISO (MGI:5504306|PMID:23785148) RGD PMID:23785148 MGI:5504306 NCBI chr18:6,020,267...6,083,055
Ensembl chr18:6,020,267...6,083,033
JBrowse link
NuRD complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd3 chromodomain helicase DNA binding protein 3 ISO UniProtKB:O94776|UniProtKB:O95983|UniProtKB:Q09028|UniProtKB:Q92769 (PMID:17827154), (PMID:27068747)
(MGI:1333986|PMID:10204490)
RGD PMID:10204490, PMID:17827154, PMID:27068747 MGI:1333986 NCBI chr10:55,943,467...55,970,417
Ensembl chr10:55,943,446...55,965,216
JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 ISO (PMID:19644445)
(MGI:5429837|PMID:22075476)
RGD PMID:19644445, PMID:22075476 MGI:5429837 NCBI chr 4:157,612,531...157,645,660
Ensembl chr 4:157,612,536...157,645,659
JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 ISS
ISO
GO_REF:0000024
(MGI:5559665|PMID:21931736)
UniProt
RGD
PMID:21931736 GO_REF:0000024, MGI:5559665 NCBI chr 5:169,519,212...169,572,059
Ensembl chr 5:169,519,212...169,567,107
JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 ISO (PMID:17827154) RGD PMID:17827154 NCBI chr 3:147,713,808...147,760,375
Ensembl chr 3:147,713,821...147,757,862
JBrowse link
G Gatad2a GATA zinc finger domain containing 2A ISO
IBA
(PMID:12183469)
PMID:21873635
RGD PMID:12183469, PMID:21873635 RGD:13792537 NCBI chr16:21,177,793...21,267,768
Ensembl chr16:21,178,138...21,268,504
JBrowse link
G Gatad2b GATA zinc finger domain containing 2B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:189,654,871...189,735,056
Ensembl chr 2:189,655,702...189,733,540
JBrowse link
G Hdac1 histone deacetylase 1 ISO (PMID:17827154), (PMID:19644445), (PMID:22926524)
PR:Q8K4B0|PR:Q9R190|PR:Q9Z2D8 (MGI:2178733|PMID:11836251), (MGI:2683041|PMID:14645126), (MGI:3619832|PMID:16462733), (MGI:5429837|PMID:22075476)
RGD PMID:11836251, PMID:14645126, PMID:16462733, PMID:17827154, PMID:19644445, PMID:22075476, PMID:22926524 MGI:2178733, MGI:2683041, MGI:3619832, MGI:5429837 NCBI chr 5:147,716,664...147,743,723
Ensembl chr 5:147,716,664...147,743,723
JBrowse link
G Hdac2 histone deacetylase 2 ISO (PMID:17827154), (PMID:19644445), (PMID:22926524) RGD PMID:17827154, PMID:19644445, PMID:22926524 NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 ISO PR:O09106|PR:Q8K4B0|PR:Q9R190 (MGI:3619832|PMID:16462733) RGD PMID:16462733 MGI:3619832 NCBI chr 7:12,179,046...12,186,251
Ensembl chr 7:12,179,203...12,186,656
JBrowse link
G Mta1 metastasis associated 1 IEA
ISO
IBA
GO_REF:0000107
PR:O09106|PR:Q9R190|PR:Q9Z2D8 (MGI:3619832|PMID:16462733)
PMID:21873635
(PMID:22926524)
Ensembl
RGD
PMID:16462733, PMID:22926524, PMID:21873635 GO_REF:0000107, MGI:3619832, RGD:13792537 NCBI chr 6:137,911,302...137,950,066
Ensembl chr 6:137,924,293...137,950,075
JBrowse link
G Mta2 metastasis associated 1 family, member 2 ISO
IBA
(PMID:19644445), (PMID:22926524)
PR:O09106|PR:Q8K4B0|PR:Q9Z2D8 (MGI:2683041|PMID:14645126), (MGI:3619832|PMID:16462733)
PMID:21873635
RGD PMID:14645126, PMID:16462733, PMID:19644445, PMID:22926524, PMID:21873635 MGI:2683041, MGI:3619832, RGD:13792537 NCBI chr 1:225,140,863...225,149,584
Ensembl chr 1:225,140,863...225,149,583
JBrowse link
G Mta3 metastasis associated 1 family, member 3 ISO
IBA
(PMID:22926524)
PMID:21873635
RGD PMID:22926524, PMID:21873635 RGD:13792537 NCBI chr 6:6,904,449...7,036,929
Ensembl chr 6:6,908,684...7,031,828
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO (PMID:19644445), (PMID:22926524)
(MGI:2683041|PMID:14645126)
RGD PMID:14645126, PMID:19644445, PMID:22926524 MGI:2683041 NCBI chr 5:147,499,880...147,535,240
Ensembl chr 5:147,499,882...147,535,240
JBrowse link
G Rbbp7 RB binding protein 7, chromatin remodeling factor ISS
ISO
GO_REF:0000024
(MGI:2683041|PMID:14645126)
(PMID:19644445), (PMID:22926524)
UniProt
RGD
PMID:14645126, PMID:19644445, PMID:22926524 GO_REF:0000024, MGI:2683041 NCBI chr  X:33,648,682...33,665,821
Ensembl chr  X:33,648,682...33,665,821
JBrowse link
G Sall1 spalt-like transcription factor 1 ISO (MGI:2178733|PMID:11836251) RGD PMID:11836251 MGI:2178733 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039
JBrowse link
G Zbtb7a zinc finger and BTB domain containing 7a colocalizes_with ISS
ISO
IEA
GO_REF:0000024
(PMID:26816381)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:26816381 GO_REF:0000024, GO_REF:0000107 NCBI chr 7:11,429,266...11,446,119
Ensembl chr 7:11,432,049...11,444,786
JBrowse link
NURF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028349.1 IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr17:66,238,947...66,241,440 JBrowse link
G Bptf bromodomain PHD finger transcription factor ISO
IBA
(PMID:20850016)
PMID:21873635
RGD PMID:20850016, PMID:21873635 RGD:13792537 NCBI chr10:95,248,573...95,350,162
Ensembl chr10:95,250,294...95,349,789
JBrowse link
G Hmgxb4 HMG-box containing 4 ISO (PMID:20850016) RGD PMID:20850016 NCBI chr19:14,352,644...14,390,499
Ensembl chr19:14,352,411...14,390,478
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO (PMID:20850016) RGD PMID:20850016 NCBI chr 5:147,499,880...147,535,240
Ensembl chr 5:147,499,882...147,535,240
JBrowse link
G RGD1308134 similar to RIKEN cDNA 1110020A23 ISO
IBA
(PMID:20850016)
PMID:21873635
RGD PMID:20850016, PMID:21873635 RGD:13792537 NCBI chr10:56,843,846...56,848,265
Ensembl chr10:56,845,383...56,849,255
JBrowse link
G Smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 ISO (PMID:20850016) RGD PMID:20850016 NCBI chr  X:134,634,651...134,719,503
Ensembl chr  X:134,647,703...134,719,097
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO (PMID:20850016) RGD PMID:20850016 NCBI chr19:30,936,703...30,969,454
Ensembl chr19:30,936,703...30,969,454
JBrowse link
RSC-type complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pbrm1 polybromo 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:7,103,714...7,202,899
Ensembl chr16:7,103,998...7,200,362
JBrowse link
RSF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rsf1 remodeling and spacing factor 1 ISO
IBA
UniProtKB:O60264 (PMID:9836642)
PMID:21873635
RGD PMID:9836642, PMID:21873635 RGD:13792537 NCBI chr 1:162,549,222...162,671,962
Ensembl chr 1:162,549,420...162,662,170
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO UniProtKB:Q96T23 (PMID:9836642) RGD PMID:9836642 NCBI chr19:30,936,703...30,969,454
Ensembl chr19:30,936,703...30,969,454
JBrowse link
SWI/SNF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A ISO
IBA
(PMID:11078522), (PMID:29374058), (PMID:8804307)
(MGI:6157116|PMID:29374058)
PMID:21873635
RGD PMID:8804307, PMID:11078522, PMID:29374058, PMID:21873635 MGI:6157116, RGD:13792537 NCBI chr 2:119,112,776...119,128,870
Ensembl chr 2:119,112,513...119,129,751
JBrowse link
G Actl6b actin-like 6B ISO
IBA
(PMID:8804307)
(MGI:2445888|PMID:12437990)
PMID:21873635
RGD PMID:8804307, PMID:12437990, PMID:21873635 MGI:2445888, RGD:13792537 NCBI chr12:22,194,595...22,211,107
Ensembl chr12:22,194,618...22,211,080
JBrowse link
G Arid1a AT-rich interaction domain 1A ISO
IBA
(PMID:11078522), (PMID:12200431), (PMID:8804307)
(MGI:1934781|PMID:11318604), (MGI:3610843|PMID:16287714)
PMID:21873635
RGD PMID:8804307, PMID:11078522, PMID:11318604, PMID:12200431, PMID:16287714, PMID:21873635 MGI:1934781, MGI:3610843, RGD:13792537 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636
JBrowse link
G Arid1b AT-rich interaction domain 1B ISO
IBA
(PMID:11734557)
PMID:21873635
RGD PMID:11734557, PMID:21873635 RGD:13792537 NCBI chr 1:45,923,119...46,232,301
Ensembl chr 1:45,923,222...46,234,874
JBrowse link
G Bicra BRD4 interacting chromatin remodeling complex associated protein ISO
IBA
(PMID:29374058)
(MGI:6157116|PMID:29374058)
PMID:21873635
RGD PMID:29374058, PMID:21873635 MGI:6157116, RGD:13792537 NCBI chr 1:77,869,020...77,943,828
Ensembl chr 1:77,869,020...77,893,509
JBrowse link
G Bicral BRD4 interacting chromatin remodeling complex associated protein like ISO
IBA
(PMID:29374058)
(MGI:6157116|PMID:29374058)
PMID:21873635
RGD PMID:29374058, PMID:21873635 MGI:6157116, RGD:13792537 NCBI chr 9:16,406,577...16,495,751
Ensembl chr 9:16,302,578...16,494,054
JBrowse link
G Brd9 bromodomain containing 9 ISO (PMID:29374058)
(MGI:6157116|PMID:29374058)
RGD PMID:29374058 MGI:6157116 NCBI chr 1:31,939,612...31,968,120
Ensembl chr 1:31,939,585...31,967,915
JBrowse link
G LOC103694314 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:29,798,912...29,803,955
Ensembl chr19:29,800,855...29,802,083
JBrowse link
G LOC103694876 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 ISO (PMID:11078522) RGD PMID:11078522 NCBI chr 1:244,615,811...244,783,736
Ensembl chr 1:244,615,821...244,782,706
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 IDA
ISO
IEA
(MGI:3610843|PMID:16287714), (MGI:6157116|PMID:29374058)
GO_REF:0000107
(PMID:10943845), (PMID:11078522), (PMID:29374058), (PMID:8804307)
RGD
Ensembl
PMID:8804307, PMID:10943845, PMID:11078522, PMID:16287714, PMID:29374058, PMID:9001244 GO_REF:0000107, MGI:3610843, MGI:6157116, RGD:634124 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 ISO
IBA
(PMID:11078522), (PMID:8804307), (PMID:8895581)
(MGI:3610843|PMID:16287714)
PMID:21873635
RGD PMID:8804307, PMID:8895581, PMID:11078522, PMID:16287714, PMID:21873635 MGI:3610843, RGD:13792537 NCBI chr20:13,679,955...13,702,821
Ensembl chr20:13,680,716...13,704,931
JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 ISO
IBA
(PMID:10078207), (PMID:11078522), (PMID:29374058), (PMID:8804307)
(MGI:3610843|PMID:16287714), (MGI:5490928|PMID:23643363), (MGI:6157116|PMID:29374058)
PMID:21873635
RGD PMID:8804307, PMID:10078207, PMID:11078522, PMID:16287714, PMID:23643363, PMID:29374058, PMID:21873635 MGI:3610843, MGI:5490928, MGI:6157116, RGD:13792537 NCBI chr 8:118,206,678...118,326,264
Ensembl chr 8:118,206,698...118,325,537
JBrowse link
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 ISO
IBA
(PMID:10078207), (PMID:11078522), (PMID:8804307)
(MGI:5490928|PMID:23643363)
PMID:21873635
RGD PMID:8804307, PMID:10078207, PMID:11078522, PMID:23643363, PMID:21873635 MGI:5490928, RGD:13792537 NCBI chr 7:2,875,898...2,905,463
Ensembl chr 7:2,875,909...2,904,453
JBrowse link
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 ISO
IBA
(PMID:11078522), (PMID:29374058), (PMID:8804307)
(MGI:6157116|PMID:29374058)
PMID:21873635
RGD PMID:8804307, PMID:11078522, PMID:29374058, PMID:21873635 MGI:6157116, RGD:13792537 NCBI chr 7:141,355,623...141,366,725
Ensembl chr 7:141,355,994...141,366,732
JBrowse link
G Smarcd2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 ISO
IBA
(PMID:8804307)
PMID:21873635
RGD PMID:8804307, PMID:21873635 RGD:13792537 NCBI chr10:94,451,866...94,460,732
Ensembl chr10:94,451,866...94,460,732
JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 ISO
IBA
(PMID:29374058), (PMID:8804307)
(MGI:6157116|PMID:29374058)
PMID:21873635
RGD PMID:8804307, PMID:29374058, PMID:21873635 MGI:6157116, RGD:13792537 NCBI chr 4:7,076,710...7,108,334
Ensembl chr 4:7,076,759...7,108,328
JBrowse link
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 IEA
ISO
IBA
GO_REF:0000002
(MGI:3610843|PMID:16287714)
PMID:21873635
(PMID:11078522), (PMID:8804307)
InterPro
RGD
PMID:8804307, PMID:11078522, PMID:16287714, PMID:21873635 GO_REF:0000002, MGI:3610843, RGD:13792537 NCBI chr10:87,116,827...87,138,890
Ensembl chr10:87,116,827...87,137,965
JBrowse link
G Ss18 SS18 subunit of BAF chromatin remodeling complex ISO (PMID:29374058)
(MGI:6157116|PMID:29374058)
RGD PMID:29374058 MGI:6157116 NCBI chr18:6,020,267...6,083,055
Ensembl chr18:6,020,267...6,083,033
JBrowse link
Swr1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr6 actin related protein 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:30,377,369...30,397,922
Ensembl chr 7:30,377,360...30,397,930
JBrowse link
G Anp32e acidic nuclear phosphoprotein 32 family member E ISO
ISS
(PMID:24463511)
GO_REF:0000024
RGD
UniProt
PMID:24463511 GO_REF:0000024 NCBI chr 2:198,040,573...198,057,005
Ensembl chr 2:198,040,536...198,057,003
JBrowse link
G Brd8 bromodomain containing 8 ISO (PMID:24463511) RGD PMID:24463511 NCBI chr18:27,375,645...27,423,989
Ensembl chr18:27,398,688...27,424,090
JBrowse link
G Dmap1 DNA methyltransferase 1-associated protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:136,533,791...136,541,795
Ensembl chr 5:136,533,792...136,541,795
JBrowse link
G Ep400 E1A binding protein p400 ISO (PMID:24463511) RGD PMID:24463511 NCBI chr12:51,948,650...52,055,274
Ensembl chr12:51,948,650...52,055,271
JBrowse link
G Ing3 inhibitor of growth family, member 3 ISO
ISS
(PMID:24463511)
GO_REF:0000024
RGD
UniProt
PMID:24463511 GO_REF:0000024 NCBI chr 4:49,017,235...49,044,450
Ensembl chr 4:49,017,311...49,042,990
JBrowse link
G Kat5 lysine acetyltransferase 5 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:24463511)
Ensembl
UniProt
RGD
PMID:24463511 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:220,967,795...220,974,596
Ensembl chr 1:220,967,796...220,974,597
JBrowse link
G RGD1564855 similar to RuvB-like protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:1,854,580...1,856,333
Ensembl chr  X:1,854,751...1,856,258
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 ISO
IBA
ISS
(PMID:24463511)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:24463511, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 4:120,411,917...120,447,458
Ensembl chr 4:120,411,991...120,447,455
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 ISO
IBA
(PMID:24463511)
PMID:21873635
RGD PMID:24463511, PMID:21873635 RGD:13792537 NCBI chr 1:101,413,766...101,426,970
Ensembl chr 1:101,413,766...101,426,852
JBrowse link
G Srcap Snf2-related CREBBP activator protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:198,957,764...199,007,576
Ensembl chr 1:198,960,542...199,007,347
JBrowse link
G Trrap transformation/transcription domain-associated protein ISO (PMID:24463511) RGD PMID:24463511 NCBI chr12:11,537,950...11,627,563
Ensembl chr12:11,537,950...11,627,563
JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:22,726,643...22,732,917
Ensembl chr12:22,726,643...22,732,943
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      chromatin 976
        SWI/SNF superfamily-type complex 78
          B-WICH complex 0
          CHD-type complex + 16
          GBAF complex 0
          INO80-type complex + 25
          ISWI-type complex + 14
          RSC-type complex 1
          SWI/SNF complex 19
          bBAF complex 0
          brahma complex 4
          esBAF complex 0
          mBAF complex 0
          nBAF complex 16
          npBAF complex 13
Path 2
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      organelle 13274
        non-membrane-bounded organelle 5194
          intracellular non-membrane-bounded organelle 5177
            chromosome 1421
              chromatin 976
                SWI/SNF superfamily-type complex 78
                  B-WICH complex 0
                  CHD-type complex + 16
                  GBAF complex 0
                  INO80-type complex + 25
                  ISWI-type complex + 14
                  RSC-type complex 1
                  SWI/SNF complex 19
                  bBAF complex 0
                  brahma complex 4
                  esBAF complex 0
                  mBAF complex 0
                  nBAF complex 16
                  npBAF complex 13
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.