SMARCE1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1) - Rat Genome Database

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Gene: SMARCE1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1) Sus scrofa
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Symbol: SMARCE1
Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
RGD ID: 14199864
Description: ENCODES a protein that exhibits protein N-terminus binding (ortholog); INVOLVED IN brain development (ortholog); chromatin remodeling (ortholog); negative regulation of transcription, DNA-templated (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Coffin-Siris Syndrome 5 (ortholog); familial meningioma (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1221,784,426 - 21,807,170 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11221,784,410 - 21,807,170 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21222,164,830 - 22,178,344 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
SMARCE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1221,784,426 - 21,807,170 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11221,784,410 - 21,807,170 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21222,164,830 - 22,178,344 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SMARCE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1740,624,962 - 40,648,654 (-)EnsemblGRCh38hg38GRCh38
GRCh381740,624,962 - 40,647,818 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371738,781,214 - 38,804,070 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361736,037,498 - 36,057,629 (-)NCBINCBI36hg18NCBI36
Build 341736,037,505 - 36,057,629NCBI
Celera1735,445,555 - 35,465,686 (-)NCBI
Cytogenetic Map17q21.2NCBI
HuRef1734,578,544 - 34,598,673 (-)NCBIHuRef
CHM1_11739,019,316 - 39,039,446 (-)NCBICHM1_1
Smarce1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391199,099,873 - 99,121,843 (-)NCBIGRCm39mm39
GRCm39 Ensembl1199,099,873 - 99,121,843 (-)Ensembl
GRCm381199,209,047 - 99,231,017 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1199,209,047 - 99,231,017 (-)EnsemblGRCm38mm10GRCm38
MGSCv371199,070,361 - 99,092,331 (-)NCBIGRCm37mm9NCBIm37
MGSCv361199,025,137 - 99,047,107 (-)NCBImm8
Celera11108,876,605 - 108,898,195 (-)NCBICelera
Cytogenetic Map11DNCBI
Smarce1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21084,159,270 - 84,180,547 (-)NCBI
Rnor_6.0 Ensembl1087,116,827 - 87,137,965 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01087,116,827 - 87,138,890 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01086,912,863 - 86,934,554 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41088,104,643 - 88,127,707 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11927,930,282 - 27,931,646 (-)NCBI
Celera1082,899,032 - 82,919,746 (-)NCBICelera
Cytogenetic Map10q31NCBI
Smarce1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545115,129,132 - 15,147,488 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545115,129,619 - 15,147,487 (-)NCBIChiLan1.0ChiLan1.0
SMARCE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11716,860,098 - 16,884,946 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1716,860,400 - 16,884,946 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01716,633,982 - 16,660,502 (+)NCBIMhudiblu_PPA_v0panPan3
SMARCE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1922,015,402 - 22,036,424 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl922,015,600 - 22,035,442 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha921,488,381 - 21,509,366 (+)NCBI
ROS_Cfam_1.0922,808,541 - 22,829,536 (+)NCBI
UMICH_Zoey_3.1921,582,974 - 21,603,940 (+)NCBI
UNSW_CanFamBas_1.0921,841,783 - 21,862,772 (+)NCBI
UU_Cfam_GSD_1.0921,966,284 - 21,987,292 (+)NCBI
Smarce1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560221,415,651 - 21,435,591 (+)NCBI
SpeTri2.0NW_00493649015,638,546 - 15,659,372 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCE1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11665,539,138 - 65,559,810 (+)NCBI
ChlSab1.1 Ensembl1665,541,513 - 65,561,401 (+)Ensembl
Vero_WHO_p1.0NW_02366607736,419,335 - 36,441,630 (+)NCBI
Smarce1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247952,712,524 - 2,730,028 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1 5 1 2 1
Low 10 2 2 2 22 2 1 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000019017   ⟹   ENSSSCP00000018512
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1221,784,427 - 21,807,162 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000048967   ⟹   ENSSSCP00000044752
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1221,784,426 - 21,807,170 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000049187   ⟹   ENSSSCP00000058986
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1221,797,418 - 21,807,170 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000061009   ⟹   ENSSSCP00000049184
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1221,797,212 - 21,807,170 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000070598   ⟹   ENSSSCP00000073780
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1221,784,426 - 21,787,274 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000089283   ⟹   ENSSSCP00000063608
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1221,784,427 - 21,805,453 (+)Ensembl
RefSeq Acc Id: XM_021067015   ⟹   XP_020922674
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11221,784,410 - 21,807,170 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021067016   ⟹   XP_020922675
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11221,784,431 - 21,807,170 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020922674 (Get FASTA)   NCBI Sequence Viewer  
  XP_020922675 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020922674   ⟸   XM_021067015
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020922675   ⟸   XM_021067016
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000058986   ⟸   ENSSSCT00000049187
RefSeq Acc Id: ENSSSCP00000044752   ⟸   ENSSSCT00000048967
RefSeq Acc Id: ENSSSCP00000018512   ⟸   ENSSSCT00000019017
RefSeq Acc Id: ENSSSCP00000063608   ⟸   ENSSSCT00000089283
RefSeq Acc Id: ENSSSCP00000049184   ⟸   ENSSSCT00000061009
RefSeq Acc Id: ENSSSCP00000073780   ⟸   ENSSSCT00000070598
Protein Domains
HMG box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000039137 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070015785 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000018512 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000044752 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000049184 UniProtKB/TrEMBL
  ENSSSCP00000058986 UniProtKB/TrEMBL
  ENSSSCP00000063608 UniProtKB/TrEMBL
  ENSSSCP00000073780 UniProtKB/TrEMBL
  ENSSSCP00070025851 UniProtKB/TrEMBL
  ENSSSCP00070025863 UniProtKB/TrEMBL
  ENSSSCP00070025879 UniProtKB/TrEMBL
  ENSSSCP00070025898 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000019017 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000048967 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000049187 UniProtKB/TrEMBL
  ENSSSCT00000061009 UniProtKB/TrEMBL
  ENSSSCT00000070598 UniProtKB/TrEMBL
  ENSSSCT00000089283 UniProtKB/TrEMBL
  ENSSSCT00070030994 UniProtKB/TrEMBL
  ENSSSCT00070031007 UniProtKB/TrEMBL
  ENSSSCT00070031025 UniProtKB/TrEMBL
  ENSSSCT00070031044 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/TrEMBL
InterPro BAF57 UniProtKB/TrEMBL
  HMG_box_dom UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
NCBI Gene SMARCE1 ENTREZGENE
PANTHER PTHR46232 UniProtKB/TrEMBL
Pfam HMG_box UniProtKB/TrEMBL
PROSITE HMG_BOX_2 UniProtKB/TrEMBL
SMART HMG UniProtKB/TrEMBL
Superfamily-SCOP SSF47095 UniProtKB/TrEMBL
UniProt A0A287AL50_PIG UniProtKB/TrEMBL
  A0A287AYF5_PIG UniProtKB/TrEMBL
  A0A287BR40_PIG UniProtKB/TrEMBL
  A0A4X1UC44_PIG UniProtKB/TrEMBL
  A0A4X1UC62_PIG UniProtKB/TrEMBL
  A0A4X1UCW0_PIG UniProtKB/TrEMBL
  A0A5G2QNF3_PIG UniProtKB/TrEMBL
  A0A5G2RBQ7_PIG UniProtKB/TrEMBL
  F1RXE6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:93235 ENTREZGENE