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ONTOLOGY REPORT - ANNOTATIONS
Term:chromatin
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Accession:GO:0000785 term browser browse the term
Definition:The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
Comment:Chromosomes include parts that are not part of the chromatin. Examples include the kinetochore.
Synonyms:related_synonym: chromosome scaffold
 alt_id: GO:0005717
 xref: NIF_Subcellular:sao1615953555

show annotations for term's descendants       view all columns           Sort by:
 
chromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07053402.1 RGD:1600115
G AABR07053884.1 RGD:1600115
G AABR07057877.1 RGD:1600115
G Ahctf1 AT hook containing transcription factor 1 JBrowse link 13 98,023,528 98,079,138 RGD:1624291
G Akap8l A-kinase anchoring protein 8 like JBrowse link 7 14,340,168 14,369,835 RGD:1624291
G Ankrd17 ankyrin repeat domain 17 JBrowse link 14 19,291,025 19,431,521 RGD:1624291
G Ankrd31 ankyrin repeat domain 31 JBrowse link 2 27,571,129 27,743,668 RGD:1624291
G Aptx aprataxin JBrowse link 5 56,987,714 57,009,481 RGD:1624291
G Arrb1 arrestin, beta 1 JBrowse link 1 164,502,099 164,573,947 RGD:1624291
G Asf1b anti-silencing function 1B histone chaperone JBrowse link 19 25,077,918 25,092,491 RGD:1624291
G Atp1b4 ATPase Na+/K+ transporting family member beta 4 JBrowse link X 124,631,544 124,652,520 RGD:2306466
G Capn2 calpain 2 JBrowse link 13 100,878,649 100,928,811 RGD:1624291
G Cbx1 chromobox 1 JBrowse link 10 84,656,698 84,677,112 RGD:1624291
G Cbx3 chromobox 3 JBrowse link 4 81,243,809 81,257,898 RGD:1624291
G Ccnd2 cyclin D2 JBrowse link 4 159,674,885 159,697,207 RGD:1624291
G Cdca5 cell division cycle associated 5 JBrowse link 1 221,448,661 221,462,235 RGD:1624291
G Cdk4 cyclin-dependent kinase 4 JBrowse link 7 70,345,971 70,352,689 RGD:1624291
G Chd5 chromodomain helicase DNA binding protein 5 JBrowse link 5 169,519,212 169,572,059 RGD:8553453
G Chek1 checkpoint kinase 1 JBrowse link 8 39,181,162 39,201,588 RGD:1624291
RGD:1600115
G Chmp2a charged multivesicular body protein 2A JBrowse link 1 65,540,808 65,543,708 RGD:1624291
G Chmp7 charged multivesicular body protein 7 JBrowse link 15 51,385,373 51,400,606 RGD:1624291
G Cops5 COP9 signalosome subunit 5 JBrowse link 5 8,876,090 8,894,345 RGD:1624291
G Creb1 cAMP responsive element binding protein 1 JBrowse link 9 71,229,753 71,298,994 RGD:1643534
G Creb3l2 cAMP responsive element binding protein 3-like 2 JBrowse link 4 64,869,285 64,981,519 RGD:13515084
G Csnk2a1 casein kinase 2 alpha 1 JBrowse link 3 147,713,808 147,760,375 RGD:11565845
G Csnk2a2 casein kinase 2 alpha 2 JBrowse link 19 9,972,537 10,012,043 RGD:11565845
G Csnk2b casein kinase 2 beta JBrowse link 20 5,108,692 5,113,675 RGD:11565845
G Dscc1 DNA replication and sister chromatid cohesion 1 JBrowse link 7 94,759,076 94,774,787 RGD:1624291
RGD:13792537
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:5128544
G Esco1 establishment of sister chromatid cohesion N-acetyltransferase 1 JBrowse link 18 1,789,796 1,857,271 RGD:1624291
G Esco2 establishment of sister chromatid cohesion N-acetyltransferase 2 JBrowse link 15 42,500,929 42,519,019 RGD:1624291
G Fam111a family with sequence similarity 111, member A JBrowse link 1 229,003,778 229,019,532 RGD:1624291
G Fam9c family with sequence similarity 9, member C JBrowse link X 157,571,817 157,591,543 RGD:1624291
G Fancc FA complementation group C JBrowse link 17 826,512 955,703 RGD:1342450
G Fank1 fibronectin type III and ankyrin repeat domains 1 JBrowse link 1 205,842,469 205,954,152 RGD:1624291
G Fbh1 F-box DNA helicase 1 JBrowse link 17 70,399,093 70,437,151 RGD:1624291
G H1f4 H1.4 linker histone, cluster member JBrowse link 17 43,734,461 43,735,120 RGD:1300396
G H2ax H2A.X variant histone JBrowse link 8 48,665,652 48,666,981 RGD:1624291
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:2306213
RGD:1624291
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:2306452
G Hdac3 histone deacetylase 3 JBrowse link 18 31,073,057 31,094,347 RGD:2306459
G Hes1 hes family bHLH transcription factor 1 JBrowse link 11 74,312,837 74,315,249 RGD:9685371
G Hic1 HIC ZBTB transcriptional repressor 1 JBrowse link 10 62,007,150 62,010,774 RGD:1624291
G Hlcs holocarboxylase synthetase JBrowse link 11 34,357,372 34,537,798 RGD:1624291
G Hmgn1 high mobility group nucleosome binding domain 1 JBrowse link 11 36,474,028 36,479,947 RGD:1600115
G Hmgn2 high mobility group nucleosomal binding domain 2 JBrowse link 5 152,195,359 152,198,813 RGD:1600115
G Hmgn3 high mobility group nucleosomal binding domain 3 JBrowse link 8 90,628,203 90,665,055 RGD:1600115
G Hmgn5 high mobility group nucleosome binding domain 5 JBrowse link X 80,134,557 80,142,902 RGD:1600115
G Hmgn5b high mobility group nucleosome binding domain 5B JBrowse link 1 124,477,164 124,485,737 RGD:1600115
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 4 81,237,496 81,241,281 RGD:9685478
G Hr HR, lysine demethylase and nuclear receptor corepressor JBrowse link 15 52,241,801 52,261,276 RGD:13792537
G Htra2 HtrA serine peptidase 2 JBrowse link 4 113,883,671 113,886,833 RGD:1624291
G Id2 inhibitor of DNA binding 2 JBrowse link 6 44,360,077 44,361,908 RGD:2303551
G Ist1 IST1 factor associated with ESCRT-III JBrowse link 19 41,968,692 41,990,843 RGD:1624291
G Jmjd1c jumonji domain containing 1C JBrowse link 20 22,751,743 22,914,080 RGD:13792537
G Kdm3a lysine demethylase 3A JBrowse link 4 99,503,160 99,547,315 RGD:13792537
G Kdm3b lysine demethylase 3B JBrowse link 18 27,593,823 27,631,129 RGD:13792537
G Kif22 kinesin family member 22 JBrowse link 1 198,461,406 198,476,430 RGD:1624291
G Klf4 Kruppel like factor 4 JBrowse link 5 72,283,311 72,287,669 RGD:1643534
G Kmt2e lysine methyltransferase 2E JBrowse link 4 8,187,751 8,255,578 RGD:1624291
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 JBrowse link 3 159,316,580 159,348,914 RGD:1624291
G Lemd2 LEM domain nuclear envelope protein 2 JBrowse link 20 5,779,742 5,786,213 RGD:1624291
G LOC100360316 hypothetical protein LOC100360316 JBrowse link 16 33,942,592 33,943,784 RGD:1600115
G LOC100911295 non-histone chromosomal protein HMG-14-like JBrowse link 11 39,482,334 39,488,327 RGD:1600115
G LOC684819 similar to H3 histone, family 2 isoform 2 JBrowse link 17 43,794,397 43,795,493 RGD:1624291
G Loxl2 lysyl oxidase-like 2 JBrowse link 15 51,276,022 51,365,238 RGD:1600115
RGD:1624291
G Macroh2a1 macroH2A.1 histone JBrowse link 17 9,282,109 9,344,698 RGD:9588477
G Macroh2a2 macroH2A.2 histone JBrowse link 20 31,352,924 31,402,483 RGD:9588477
G Mael maelstrom spermatogenic transposon silencer JBrowse link 13 84,412,569 84,452,140 RGD:1624291
G Maged1 MAGE family member D1 JBrowse link X 63,803,194 63,809,715 RGD:1624291
RGD:1600115
G Mau2 MAU2 sister chromatid cohesion factor JBrowse link 16 21,132,115 21,163,257 RGD:1624291
RGD:13792537
G Mbd1 methyl-CpG binding domain protein 1 JBrowse link 18 70,248,568 70,263,190 RGD:1624291
G Mbd2 methyl-CpG binding domain protein 2 JBrowse link 18 65,814,026 65,885,115 RGD:1624291
G Mbd3 methyl-CpG binding domain protein 3 JBrowse link 7 12,179,046 12,186,251 RGD:1624291
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase JBrowse link 4 147,744,673 147,756,462 RGD:1624291
RGD:13792537
G Mcm2 minichromosome maintenance complex component 2 JBrowse link 4 120,825,699 120,840,221 RGD:1624291
G Mecp2 methyl CpG binding protein 2 JBrowse link X 156,650,389 156,713,813 RGD:13792537
G Med1 mediator complex subunit 1 JBrowse link 10 86,101,560 86,145,271 RGD:5128544
G Men1 menin 1 JBrowse link 1 221,704,394 221,710,343 RGD:1624291
RGD:13792537
G Mis18a MIS18 kinetochore protein A JBrowse link 11 30,880,231 30,893,262 RGD:13792537
G Mtbp MDM2 binding protein JBrowse link 7 95,309,928 95,392,418 RGD:1624291
G Ncor2 nuclear receptor co-repressor 2 JBrowse link 12 36,871,917 37,033,701 RGD:2306459
G Nedd4 NEDD4 E3 ubiquitin protein ligase JBrowse link 8 79,323,408 79,408,842 RGD:1624291
RGD:1600115
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:1624291
G Nipbl NIPBL, cohesin loading factor JBrowse link 2 57,508,830 57,676,197 RGD:1624291
RGD:13792537
G Nsd1 nuclear receptor binding SET domain protein 1 JBrowse link 17 9,840,859 9,955,391 RGD:13792537
G Nsd2 nuclear receptor binding SET domain protein 2 JBrowse link 14 82,119,210 82,196,501 RGD:13792537
G Nsd3 nuclear receptor binding SET domain protein 3 JBrowse link 16 71,126,276 71,237,118 RGD:13792537
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 JBrowse link 13 48,679,726 48,709,663 RGD:1624291
G Obi1 ORC ubiquitin ligase 1 JBrowse link 15 88,632,089 88,670,325 RGD:1624291
G Oip5 Opa interacting protein 5 JBrowse link 3 111,413,662 111,422,320 RGD:1624291
RGD:13792537
G Orc2 origin recognition complex, subunit 2 JBrowse link 9 65,350,630 65,387,293 RGD:1624291
G Orc3 origin recognition complex, subunit 3 JBrowse link 5 50,019,159 50,075,533 RGD:1624291
RGD:1600115
G Orc5 origin recognition complex, subunit 5 JBrowse link 4 9,160,050 9,223,998 RGD:1624291
G Parg poly (ADP-ribose) glycohydrolase JBrowse link 16 8,350,168 8,457,999 RGD:724638
G Park7 Parkinsonism associated deglycase JBrowse link 5 167,982,438 168,004,724 RGD:1624291
RGD:1600115
G Parpbp PARP1 binding protein JBrowse link 7 28,654,707 28,724,412 RGD:1624291
RGD:1600115
G Pcna proliferating cell nuclear antigen JBrowse link 3 124,880,698 124,884,570 RGD:1600115
RGD:1624291
G Pds5a PDS5 cohesin associated factor A JBrowse link 14 44,185,445 44,282,308 RGD:1624291
RGD:13792537
G Pds5b PDS5 cohesin associated factor B JBrowse link 12 659,995 794,042 RGD:1600115
RGD:13792537
RGD:1624291
G Pink1 PTEN induced kinase 1 JBrowse link 5 156,677,146 156,689,258 RGD:1624291
G Plk1 polo-like kinase 1 JBrowse link 1 192,115,990 192,125,969 RGD:1624291
RGD:1600115
G Plk2 polo-like kinase 2 JBrowse link 2 41,911,143 41,916,901 RGD:1624291
G Plk3 polo-like kinase 3 JBrowse link 5 135,997,725 136,002,900 RGD:1624291
G Pola1 DNA polymerase alpha 1, catalytic subunit JBrowse link X 62,382,604 62,698,830 RGD:1624291
RGD:1600115
G Pou1f1 POU class 1 homeobox 1 JBrowse link 11 2,645,659 2,662,581 RGD:1601441
G Ppp1r10 protein phosphatase 1, regulatory subunit 10 JBrowse link 20 3,329,677 3,344,286 RGD:1600115
RGD:1624291
G Prdm9 PR/SET domain 9 JBrowse link 1 57,533,602 57,555,155 RGD:1624291
G Rad18 RAD18 E3 ubiquitin protein ligase JBrowse link 4 144,537,329 144,620,606 RGD:1624291
G Rad21 RAD21 cohesin complex component JBrowse link 7 91,511,755 91,538,673 RGD:1624291
G Rad51 RAD51 recombinase JBrowse link 3 110,918,240 110,942,920 RGD:1624291
G Ran RAN, member RAS oncogene family JBrowse link 12 31,319,556 31,324,105 RGD:1624291
G Rb1 RB transcriptional corepressor 1 JBrowse link 15 55,081,582 55,209,060 RGD:13792537
G Rbl1 RB transcriptional corepressor like 1 JBrowse link 3 153,263,692 153,321,351 RGD:13792537
G Rbl2 RB transcriptional corepressor like 2 JBrowse link 19 17,300,088 17,346,865 RGD:2303551
RGD:13792537
G Rcc1 regulator of chromosome condensation 1 JBrowse link 5 150,508,840 150,531,062 RGD:1624291
G Rcor2 REST corepressor 2 JBrowse link 1 222,513,970 222,525,356 RGD:2306452
G Rest RE1-silencing transcription factor JBrowse link 14 33,131,985 33,152,019 RGD:2306452
G RGD1564836 similar to HMGA1b JBrowse link X 33,349,178 33,349,519 RGD:1600115
G Rpa2 replication protein A2 JBrowse link 5 150,957,041 150,967,597 RGD:1624291
G Satb1 SATB homeobox 1 JBrowse link 9 2,181,135 2,277,949 RGD:1624291
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 JBrowse link 5 16,904,926 16,930,111 RGD:1624291
G Sf3b1 splicing factor 3b, subunit 1 JBrowse link 9 61,594,620 61,634,510 RGD:1624291
G Sfpq splicing factor proline and glutamine rich JBrowse link 5 145,079,803 145,088,517 RGD:1624291
G Sin3a SIN3 transcription regulator family member A JBrowse link 8 61,748,590 61,803,314 RGD:2303551
RGD:13792537
G Sin3b SIN3 transcription regulator family member B JBrowse link 16 18,842,456 18,860,086 RGD:13792537
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:1624291
G Sirt7 sirtuin 7 JBrowse link 10 109,796,046 109,802,821 RGD:1600115
RGD:1624291
G Slf2 SMC5-SMC6 complex localization factor 2 JBrowse link 1 264,670,836 264,733,465 RGD:1624291
G Smc3 structural maintenance of chromosomes 3 JBrowse link 1 274,310,120 274,352,856 RGD:1600115
RGD:1624291
G Smcr8 SMCR8-C9orf72 complex subunit JBrowse link 10 47,019,326 47,026,465 RGD:1624291
G Snw1 SNW domain containing 1 JBrowse link 6 111,483,698 111,507,782 RGD:2306466
G Sox10 SRY-box transcription factor 10 JBrowse link 7 120,393,238 120,403,523 RGD:12879825
G Stag1 stromal antigen 1 JBrowse link 8 108,958,099 109,342,738 RGD:1624291
RGD:13792537
G Stag2 stromal antigen 2 JBrowse link X 128,493,603 128,624,418 RGD:1624291
RGD:13792537
G Stag3 stromal antigen 3 JBrowse link 12 19,599,741 19,630,775 RGD:13792537
G Suv39h2 suppressor of variegation 3-9 homolog 2 JBrowse link 17 78,762,897 78,782,016 RGD:1624291
G Tbxt T-box transcription factor T JBrowse link 1 52,887,067 52,900,691 RGD:1624291
G Tmpo thymopoietin JBrowse link 7 31,847,412 31,872,416 RGD:1624291
G Tox4 TOX high mobility group box family member 4 JBrowse link 15 28,696,378 28,709,960 RGD:1600115
RGD:1624291
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1643534
G Tp73 tumor protein p73 JBrowse link 5 171,355,876 171,415,354 RGD:1599582
G Trim28 tripartite motif-containing 28 JBrowse link 1 65,544,369 65,551,043 RGD:1624291
RGD:13792537
G Ube2a ubiquitin-conjugating enzyme E2A JBrowse link X 123,486,988 123,497,726 RGD:1624291
G Ube2b ubiquitin-conjugating enzyme E2B JBrowse link 10 37,439,947 37,454,867 RGD:1624291
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 JBrowse link 9 16,003,058 16,080,152 RGD:1624291
G Upf1 UPF1, RNA helicase and ATPase JBrowse link 16 20,824,888 20,845,632 RGD:1624291
G Uxt ubiquitously-expressed, prefoldin-like chaperone JBrowse link X 1,275,402 1,287,781 RGD:13792537
G Wapl WAPL cohesin release factor JBrowse link 16 11,029,325 11,108,867 RGD:1624291
G Wdr43 WD repeat domain 43 JBrowse link 6 23,433,532 23,473,179 RGD:1600115
RGD:1624291
G Wdr82 WD repeat domain 82 JBrowse link 8 114,866,769 114,886,208 RGD:1624291
ASTRA complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Telo2 telomere maintenance 2 JBrowse link 10 14,461,581 14,476,812 RGD:13792537
G Tti1 TELO2 interacting protein 1 JBrowse link 3 154,463,108 154,506,955 RGD:13792537
G Tti2 TELO2 interacting protein 2 JBrowse link 16 64,737,342 64,745,207 RGD:13792537
brahma complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arid1a AT-rich interaction domain 1A JBrowse link 5 151,904,687 151,977,973 RGD:1600115
G Arid1b AT-rich interaction domain 1B JBrowse link 1 45,923,119 46,232,301 RGD:1600115
G LOC103694876 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 RGD:13792537
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 20 13,679,955 13,702,821 RGD:13792537
CERF complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cecr2 CECR2, histone acetyl-lysine reader JBrowse link 4 153,217,521 153,327,153 RGD:1624291
G Smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 JBrowse link X 134,634,651 134,719,503 RGD:1624291
CHRAC term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07027368.1 RGD:13792537
G Baz1a bromodomain adjacent to zinc finger domain, 1A JBrowse link 6 75,793,223 75,873,854 RGD:1624291
G Chrac1 chromatin accessibility complex subunit 1 JBrowse link 7 114,323,542 114,326,930 RGD:13792537
G LOC100362333 DNA-directed DNA polymerase epsilon 3 JBrowse link 7 118,816,053 118,816,725 RGD:13792537
G Pole3 DNA polymerase epsilon 3, accessory subunit JBrowse link 5 78,380,813 78,384,047 RGD:13792537
cytoplasmic chromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Npm2 nucleophosmin/nucleoplasmin 2 JBrowse link 15 52,337,457 52,345,849 RGD:1624291
euchromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ankrd2 ankyrin repeat domain 2 JBrowse link 1 261,281,859 261,291,307 RGD:1624291
G Cbx2 chromobox 2 JBrowse link 10 108,132,105 108,140,935 RGD:1624291
G Dnmt3a DNA methyltransferase 3 alpha JBrowse link 6 28,205,375 28,346,052 RGD:1624291
RGD:8554662
G Dntt DNA nucleotidylexotransferase JBrowse link 1 260,289,626 260,321,174 RGD:8694134
G Hsf1 heat shock transcription factor 1 JBrowse link 7 117,538,523 117,565,478 RGD:10402365
G Jak2 Janus kinase 2 JBrowse link 1 247,398,667 247,457,521 RGD:1641941
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase JBrowse link X 71,540,870 71,585,906 RGD:9590169
G Rnf2 ring finger protein 2 JBrowse link 13 68,829,714 68,859,920 RGD:1624291
RGD:1600115
G Rrp1b ribosomal RNA processing 1B JBrowse link 20 10,844,234 10,869,830 RGD:1624291
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 JBrowse link 9 10,738,211 10,758,403 RGD:1624291
RGD:1600115
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:8158086
heterochromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atrx ATRX, chromatin remodeler JBrowse link X 76,820,110 76,979,155 RGD:1624291
G Bmi1 BMI1 proto-oncogene, polycomb ring finger JBrowse link 17 85,360,439 85,370,283 RGD:1624291
G Cbx2 chromobox 2 JBrowse link 10 108,132,105 108,140,935 RGD:1624291
G Cbx5 chromobox 5 JBrowse link 7 144,819,673 144,865,014 RGD:1624291
G Cbx6 chromobox 6 JBrowse link 7 121,047,996 121,058,109 RGD:1624291
G Cbx7 chromobox 7 JBrowse link 7 121,136,067 121,153,503 RGD:1624291
G Cbx8 chromobox 8 JBrowse link 10 108,148,073 108,150,511 RGD:1624291
G Chd5 chromodomain helicase DNA binding protein 5 JBrowse link 5 169,519,212 169,572,059 RGD:1624291
RGD:1600115
G Daxx death-domain associated protein JBrowse link 20 5,480,103 5,485,962 RGD:1624291
G Ddx6 DEAD-box helicase 6 JBrowse link 8 48,924,768 48,961,394 RGD:10755411
G Dnmt1 DNA methyltransferase 1 JBrowse link 8 21,922,515 21,968,495 RGD:1624291
G Dnmt3a DNA methyltransferase 3 alpha JBrowse link 6 28,205,375 28,346,052 RGD:1624291
G Dnmt3b DNA methyltransferase 3 beta JBrowse link 3 149,131,541 149,170,061 RGD:1624291
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:1624291
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:1624291
G Hsf1 heat shock transcription factor 1 JBrowse link 7 117,538,523 117,565,478 RGD:10402365
G Mbd1 methyl-CpG binding domain protein 1 JBrowse link 18 70,248,568 70,263,190 RGD:1624291
G Mbd2 methyl-CpG binding domain protein 2 JBrowse link 18 65,814,026 65,885,115 RGD:1624291
G Mbd3 methyl-CpG binding domain protein 3 JBrowse link 7 12,179,046 12,186,251 RGD:1624291
G Mecp2 methyl CpG binding protein 2 JBrowse link X 156,650,389 156,713,813 RGD:1624291
RGD:13792537
RGD:1600115
G Morc2 MORC family CW-type zinc finger 2 JBrowse link 14 83,889,138 83,930,263 RGD:1624291
G Mphosph8 M-phase phosphoprotein 8 JBrowse link 15 36,918,843 36,946,712 RGD:1624291
G Orc2 origin recognition complex, subunit 2 JBrowse link 9 65,350,630 65,387,293 RGD:1624291
G Phc2 polyhomeotic homolog 2 JBrowse link 5 146,832,552 146,931,444 RGD:1624291
G Pml promyelocytic leukemia JBrowse link 8 63,002,515 63,034,310 RGD:1624291
G Rnf2 ring finger protein 2 JBrowse link 13 68,829,714 68,859,920 RGD:1624291
G Rrp1b ribosomal RNA processing 1B JBrowse link 20 10,844,234 10,869,830 RGD:1624291
G Sall1 spalt-like transcription factor 1 JBrowse link 19 23,387,737 23,405,025 RGD:1624291
G Sall4 spalt-like transcription factor 4 JBrowse link 3 165,520,155 165,538,176 RGD:1624291
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:1624291
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1` JBrowse link 4 95,884,020 95,945,248 RGD:1624291
RGD:1600115
G Sumo1 small ubiquitin-like modifier 1 JBrowse link 9 66,453,428 66,483,614 RGD:9587797
G Suv39h1 suppressor of variegation 3-9 homolog 1 JBrowse link X 146,532,002 146,533,538 RGD:1624291
G Tasor transcription activation suppressor JBrowse link 16 3,050,506 3,108,168 RGD:1624291
G Tcp1 t-complex 1 JBrowse link 1 48,025,664 48,033,343 RGD:1304423
G Top2b DNA topoisomerase II beta JBrowse link 15 10,262,972 10,319,741 RGD:1624291
G Uba1 ubiquitin-like modifier activating enzyme 1 JBrowse link X 1,723,135 1,745,147 RGD:1624291
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 JBrowse link 9 10,738,211 10,758,403 RGD:1600115
RGD:1624291
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:8158086
G Wdr76 WD repeat domain 76 JBrowse link 3 113,445,498 113,479,483 RGD:1624291
HULC complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rnf20 ring finger protein 20 JBrowse link 5 64,892,996 64,920,397 RGD:1624291
G Rnf40 ring finger protein 40 JBrowse link 1 199,037,472 199,052,823 RGD:1624291
RGD:1600115
G Ube2a ubiquitin-conjugating enzyme E2A JBrowse link X 123,486,988 123,497,726 RGD:1624291
RGD:13792537
G Ube2b ubiquitin-conjugating enzyme E2B JBrowse link 10 37,439,947 37,454,867 RGD:1624291
RGD:13792537
RGD:1600115
G Ube2u ubiquitin conjugating enzyme E2 U JBrowse link 5 118,574,647 118,642,810 RGD:13792537
Ino80 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actl6a actin-like 6A JBrowse link 2 119,112,776 119,128,870 RGD:1624291
G Actr5 actin related protein 5 JBrowse link 3 155,118,567 155,132,073 RGD:1624291
RGD:13792537
G Actr8 actin related protein 8 JBrowse link 16 6,047,977 6,062,586 RGD:1624291
RGD:13792537
G Ino80 INO80 complex ATPase subunit JBrowse link 3 111,186,371 111,266,542 RGD:1624291
RGD:13792537
G Ino80b INO80 complex subunit B JBrowse link 4 113,954,612 113,957,774 RGD:1624291
G Ino80c INO80 complex subunit C JBrowse link 18 15,995,005 16,009,639 RGD:1624291
RGD:13792537
G Ino80e INO80 complex subunit E JBrowse link 1 198,287,489 198,298,076 RGD:1624291
RGD:13792537
G Mcrs1 microspherule protein 1 JBrowse link 7 140,910,420 140,919,234 RGD:1624291
G Nfrkb nuclear factor related to kappa B binding protein JBrowse link 8 32,530,412 32,561,955 RGD:1624291
RGD:13792537
G RGD1564855 similar to RuvB-like protein 1 JBrowse link X 1,854,580 1,856,333 RGD:13792537
G Ruvbl1 RuvB-like AAA ATPase 1 JBrowse link 4 120,411,917 120,447,458 RGD:1624291
RGD:13792537
G Ruvbl2 RuvB-like AAA ATPase 2 JBrowse link 1 101,413,766 101,426,970 RGD:1624291
RGD:13792537
G Tfpt TCF3 fusion partner JBrowse link 1 64,162,525 64,172,307 RGD:1600115
RGD:13792537
RGD:1624291
G Uchl5 ubiquitin C-terminal hydrolase L5 JBrowse link 13 60,568,102 60,603,812 RGD:1624291
G Yy1 YY1 transcription factor JBrowse link 6 132,702,443 132,726,848 RGD:1624291
ISWI-type complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cecr2 CECR2, histone acetyl-lysine reader JBrowse link 4 153,217,521 153,327,153 RGD:1624291
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 19 30,936,703 30,969,454 RGD:1624291
nBAF complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actl6b actin-like 6B JBrowse link 12 22,194,595 22,211,107 RGD:1600115
RGD:1624291
G Arid1a AT-rich interaction domain 1A JBrowse link 5 151,904,687 151,977,973 RGD:1624291
RGD:13792537
G Arid1b AT-rich interaction domain 1B JBrowse link 1 45,923,119 46,232,301 RGD:1624291
RGD:13792537
G Dpf1 double PHD fingers 1 JBrowse link 1 87,248,448 87,258,070 RGD:1600115
RGD:13792537
RGD:1624291
G Dpf2 double PHD fingers 2 JBrowse link 1 221,253,764 221,269,043 RGD:13792537
G Dpf3 double PHD fingers 3 JBrowse link 6 106,660,569 106,971,310 RGD:1624291
RGD:13792537
G LOC103694876 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 RGD:13792537
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 JBrowse link 1 244,615,811 244,783,736 RGD:1624291
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:1600115
RGD:1624291
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 20 13,679,955 13,702,821 RGD:1624291
RGD:13792537
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 JBrowse link 8 118,206,678 118,326,264 RGD:1624291
RGD:13792537
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 JBrowse link 7 2,875,898 2,905,463 RGD:1624291
RGD:13792537
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 JBrowse link 7 141,355,623 141,366,725 RGD:1624291
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 JBrowse link 4 7,076,710 7,108,334 RGD:1624291
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 JBrowse link 10 87,116,827 87,138,890 RGD:1624291
G Ss18l1 SS18L1 subunit of BAF chromatin remodeling complex JBrowse link 3 175,426,754 175,445,222 RGD:1624291
npBAF complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actl6a actin-like 6A JBrowse link 2 119,112,776 119,128,870 RGD:1624291
G Arid1a AT-rich interaction domain 1A JBrowse link 5 151,904,687 151,977,973 RGD:1624291
G LOC103694876 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 RGD:13792537
G Phf10 PHD finger protein 10 JBrowse link 1 56,951,516 56,967,893 RGD:1624291
RGD:1600115
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 JBrowse link 1 244,615,811 244,783,736 RGD:1624291
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:1624291
RGD:1600115
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 20 13,679,955 13,702,821 RGD:1624291
RGD:13792537
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 JBrowse link 8 118,206,678 118,326,264 RGD:1624291
RGD:13792537
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 JBrowse link 7 2,875,898 2,905,463 RGD:1624291
RGD:13792537
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 JBrowse link 7 141,355,623 141,366,725 RGD:1624291
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 JBrowse link 4 7,076,710 7,108,334 RGD:1624291
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 JBrowse link 10 87,116,827 87,138,890 RGD:1624291
G Ss18 SS18 subunit of BAF chromatin remodeling complex JBrowse link 18 6,020,267 6,083,055 RGD:1624291
nuclear chromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07009373.1 RGD:13792537
G AABR07015743.1 RGD:1600115
G AABR07019870.1 RGD:13792537
G AABR07025074.1 RGD:13792537
G AABR07025825.1 RGD:13792537
G AABR07030543.1 RGD:13792537
G AABR07040430.1 RGD:13792537
G AABR07040480.1 RGD:13792537
G AABR07041586.2 RGD:13792537
G AABR07060165.1 RGD:13792537
G AABR07060287.1 RGD:13792537
G AABR07062859.1 RGD:13792537
G AABR07067274.1 RGD:13792537
G AC094217.2 RGD:13792537
G Aptx aprataxin JBrowse link 5 56,987,714 57,009,481 RGD:1624291
G Ar androgen receptor JBrowse link X 67,656,253 67,828,998 RGD:1600115
RGD:1624291
G Arid1a AT-rich interaction domain 1A JBrowse link 5 151,904,687 151,977,973 RGD:1624291
G Asf1a anti-silencing function 1A histone chaperone JBrowse link 20 34,894,419 34,909,265 RGD:1624291
G Asf1b anti-silencing function 1B histone chaperone JBrowse link 19 25,077,918 25,092,491 RGD:1624291
G Asxl1 ASXL transcriptional regulator 1 JBrowse link 3 148,832,231 148,902,356 RGD:13792537
G Asxl2 ASXL transcriptional regulator 2 JBrowse link 6 27,835,346 27,919,285 RGD:1624291
RGD:13792537
G Asxl3 ASXL transcriptional regulator 3 JBrowse link 18 13,322,148 13,496,230 RGD:13792537
G Bptf bromodomain PHD finger transcription factor JBrowse link 10 95,248,573 95,350,162 RGD:1624291
G Brd4 bromodomain containing 4 JBrowse link 7 14,222,101 14,303,055 RGD:1624291
G Bud31 BUD31 homolog JBrowse link 12 11,232,963 11,240,449 RGD:1624291
RGD:1600115
G Calcoco1 calcium binding and coiled coil domain 1 JBrowse link 7 144,307,562 144,322,253 RGD:1624291
G Cbx7 chromobox 7 JBrowse link 7 121,136,067 121,153,503 RGD:1624291
G Cbx8 chromobox 8 JBrowse link 10 108,148,073 108,150,511 RGD:1624291
G Ccar2 cell cycle and apoptosis regulator 2 JBrowse link 15 51,818,887 51,834,443 RGD:1624291
G Cdca5 cell division cycle associated 5 JBrowse link 1 221,448,661 221,462,235 RGD:1624291
G Cdk12 cyclin-dependent kinase 12 JBrowse link 10 86,157,186 86,210,657 RGD:13792537
G Cdk13 cyclin-dependent kinase 13 JBrowse link 17 49,833,194 49,922,932 RGD:13792537
G Cdk9 cyclin-dependent kinase 9 JBrowse link 3 11,742,269 11,747,117 RGD:13792537
G Cebpb CCAAT/enhancer binding protein beta JBrowse link 3 164,424,502 164,425,933 RGD:1624291
G Chaf1a chromatin assembly factor 1 subunit A JBrowse link 9 11,000,869 11,027,631 RGD:1624291
G Chaf1b chromatin assembly factor 1 subunit B JBrowse link 11 34,101,248 34,121,371 RGD:1624291
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 JBrowse link 1 12,823,363 12,825,806 RGD:1624291
G Cops9 COP9 signalosome subunit 9 JBrowse link 9 99,813,332 99,818,262 RGD:1624291
G Creb1 cAMP responsive element binding protein 1 JBrowse link 9 71,229,753 71,298,994 RGD:8554469
RGD:1624291
G Creb3l1 cAMP responsive element binding protein 3-like 1 JBrowse link 3 80,892,433 80,933,283 RGD:1624291
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:1624291
RGD:1600115
G Ctdspl2 CTD small phosphatase like 2 JBrowse link 3 113,906,803 113,957,289 RGD:1600115
RGD:1624291
G Dbf4b DBF4 zinc finger B JBrowse link 10 90,710,468 90,723,313 RGD:1624291
G Ddx11 DEAD/H-box helicase 11 JBrowse link 9 114,113,642 114,133,908 RGD:1624291
G Dffa DNA fragmentation factor subunit alpha JBrowse link 5 165,922,893 165,935,822 RGD:1624291
RGD:13792537
G Dffb DNA fragmentation factor subunit beta JBrowse link 5 171,250,559 171,261,875 RGD:1624291
RGD:13792537
G Dlx5 distal-less homeobox 5 JBrowse link 4 32,387,741 32,392,085 RGD:1624291
RGD:1600115
G Dntt DNA nucleotidylexotransferase JBrowse link 1 260,289,626 260,321,174 RGD:8694134
G Dpf1 double PHD fingers 1 JBrowse link 1 87,248,448 87,258,070 RGD:13792537
G Dpf2 double PHD fingers 2 JBrowse link 1 221,253,764 221,269,043 RGD:1624291
RGD:13792537
G Dpf3 double PHD fingers 3 JBrowse link 6 106,660,569 106,971,310 RGD:13792537
G Dvl3 dishevelled segment polarity protein 3 JBrowse link 11 84,051,177 84,068,479 RGD:1624291
G E2f1 E2F transcription factor 1 JBrowse link 3 150,062,895 150,073,721 RGD:1624291
G E2f4 E2F transcription factor 4 JBrowse link 19 37,252,828 37,260,239 RGD:1624291
G Egr1 early growth response 1 JBrowse link 18 27,657,903 27,660,101 RGD:1624291
RGD:1600115
G Ehmt2 euchromatic histone lysine methyltransferase 2 JBrowse link 20 4,576,033 4,592,980 RGD:1624291
G Eme1 essential meiotic structure-specific endonuclease 1 JBrowse link 10 82,366,820 82,375,510 RGD:1624291
RGD:13792537
G Eme2 essential meiotic structure-specific endonuclease subunit 2 JBrowse link 10 14,253,552 14,257,017 RGD:13792537
G Enc1 ectodermal-neural cortex 1 JBrowse link 2 28,049,217 28,061,023 RGD:7775032
G Eomes eomesodermin JBrowse link 8 127,144,367 127,152,618 RGD:1624291
RGD:1600115
G Esr1 estrogen receptor 1 JBrowse link 1 41,192,029 41,594,799 RGD:1600115
RGD:1624291
G Etv3 ETS variant transcription factor 3 JBrowse link 2 186,872,483 186,887,294 RGD:1624291
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit JBrowse link 4 77,284,404 77,347,011 RGD:1624291
G Fer FER tyrosine kinase JBrowse link 9 111,557,804 111,868,583 RGD:1600115
RGD:1624291
G Foxd3 forkhead box D3 JBrowse link 5 118,346,283 118,349,120 RGD:1624291
G Foxh1 forkhead box H1 JBrowse link 7 117,730,307 117,733,076 RGD:1624291
G Gabpa GA binding protein transcription factor subunit alpha JBrowse link 11 24,293,845 24,322,822 RGD:1624291
G Gata3 GATA binding protein 3 JBrowse link 17 72,419,752 72,452,043 RGD:1624291
RGD:1600115
G Gata4 GATA binding protein 4 JBrowse link 15 46,386,703 46,458,679 RGD:1624291
G Gata5 GATA binding protein 5 JBrowse link 3 175,701,278 175,709,465 RGD:1624291
G H1f0 H1 histone family, member 0 JBrowse link 7 120,260,776 120,262,636 RGD:1624291
G H1f1 H1.1 linker histone, cluster member JBrowse link 17 43,614,101 43,614,844 RGD:1624291
RGD:13792537
G H1f2 H1.2 linker histone, cluster member JBrowse link 17 43,638,938 43,640,445 RGD:13792537
G H1f4 H1.4 linker histone, cluster member JBrowse link 17 43,734,461 43,735,120 RGD:13792537
G H1f5 H1.5 linker histone, cluster member JBrowse link 17 44,766,313 44,766,981 RGD:1624291
RGD:13792537
G H1f6 H1.6 linker histone, cluster member JBrowse link 17 43,675,190 43,675,934 RGD:13792537
G H1f7 H1.7 linker histone JBrowse link 7 139,871,491 139,872,858 RGD:1600115
RGD:1624291
G H2ac1 H2A clustered histone 1 JBrowse link 17 43,422,454 43,422,846 RGD:13792537
G H2ac20 H2A clustered histone 20 JBrowse link 2 198,360,271 198,360,735 RGD:13792537
G H2ac21 H2A clustered histone 21 JBrowse link 2 198,359,754 198,360,146 RGD:13792537
G H2afb3 H2A histone family, member B3 JBrowse link X 88,602,135 88,602,485 RGD:13792537
G H2aj H2A.J histone JBrowse link 4 170,766,900 170,767,384 RGD:13792537
G H2ax H2A.X variant histone JBrowse link 8 48,665,652 48,666,981 RGD:1624291
RGD:13792537
G H2az1 H2A.Z variant histone 1 JBrowse link 2 243,105,224 243,107,333 RGD:13792537
G H2az2 H2A.Z variant histone 2 JBrowse link 14 86,687,782 86,706,639 RGD:13792537
G H4f3 H1.3 linker histone, cluster member JBrowse link 17 43,797,711 43,798,450 RGD:1624291
RGD:13792537
G Hand2 heart and neural crest derivatives expressed 2 JBrowse link 16 36,371,489 36,373,551 RGD:1624291
RGD:1600115
G Hat1 histone acetyltransferase 1 JBrowse link 3 58,022,395 58,070,067 RGD:1624291
RGD:13792537
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:1624291
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:1624291
G Hdac5 histone deacetylase 5 JBrowse link 10 90,140,183 90,169,853 RGD:1624291
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:1600115
RGD:1624291
G Hils1 histone linker H1 domain, spermatid-specific 1 JBrowse link 10 82,775,691 82,776,487 RGD:13792537
G Hira histone cell cycle regulator JBrowse link 11 86,168,196 86,276,430 RGD:1624291
RGD:13792537
G Hist1h2ac histone cluster 1 H2A family member C JBrowse link 17 44,520,484 44,521,142 RGD:13792537
G Hist1h2af histone cluster 1 H2A family member F JBrowse link 17 43,627,237 43,627,629 RGD:13792537
G Hist1h2ah histone cluster 1 H2A family member H JBrowse link 17 43,632,354 43,632,851 RGD:13792537
G Hist1h2ai histone cluster 1, H2ai JBrowse link 17 44,758,412 44,759,675 RGD:13792537
G hist1h2ail2 histone cluster 1, H2ai-like2 JBrowse link 17 44,794,087 44,794,563 RGD:13792537
G Hist1h2ak histone cluster 1, H2ak JBrowse link 17 44,840,990 44,841,382 RGD:13792537
G Hist1h2an histone cluster 1, H2an JBrowse link 17 43,779,174 43,779,775 RGD:13792537
G Hist1h2ao histone cluster 1, H2ao JBrowse link 17 44,744,534 44,744,931 RGD:13792537
G Hist2h2aa2 histone cluster 2 H2A family member A2 JBrowse link 2 198,381,678 198,382,247 RGD:13792537
G Hist2h2aa3 histone cluster 2 H2A family member A3 JBrowse link 2 198,388,766 198,389,293 RGD:13792537
G Hist3h2a histone cluster 3, H2a JBrowse link 10 45,297,603 45,299,155 RGD:13792537
G Hmg1l1 high-mobility group (nonhistone chromosomal) protein 1-like 1 JBrowse link 19 59,984,234 59,985,494 RGD:13792537
G Hmgb1 high mobility group box 1 JBrowse link 12 7,082,529 7,090,246 RGD:1624291
RGD:13792537
G Hmgb2 high mobility group box 2 JBrowse link 16 36,077,615 36,080,191 RGD:1624291
RGD:13792537
RGD:1600115
G Hmgb2l1 high mobility group box 2-like 1 JBrowse link 11 49,708,038 49,709,128 RGD:1600115
RGD:13792537
G Hmgb3 high mobility group box 3 JBrowse link 17 36,690,190 36,694,329 RGD:13792537
G Hmgb4 high-mobility group box 4 JBrowse link 5 146,445,545 146,446,227 RGD:13792537
G Hnrnpd heterogeneous nuclear ribonucleoprotein D JBrowse link 14 11,256,163 11,274,684 RGD:1600115
G Hnrnpk heterogeneous nuclear ribonucleoprotein K JBrowse link 17 6,664,730 6,676,753 RGD:1624291
G Hypm huntingtin interacting protein M JBrowse link X 13,989,401 13,989,955 RGD:13792537
G Ipo4 importin 4 JBrowse link 15 34,304,425 34,314,552 RGD:1624291
G Irf1 interferon regulatory factor 1 JBrowse link 10 39,109,530 39,116,532 RGD:1624291
RGD:1600115
G Jun Jun proto-oncogene, AP-1 transcription factor subunit JBrowse link 5 114,011,184 114,014,277 RGD:2291793
RGD:13792537
G Junb JunB proto-oncogene, AP-1 transcription factor subunit JBrowse link 19 26,092,972 26,094,756 RGD:13792537
G Jund JunD proto-oncogene, AP-1 transcription factor subunit JBrowse link 16 20,485,028 20,486,707 RGD:13792537
G Kat2a lysine acetyltransferase 2A JBrowse link 10 88,611,586 88,619,558 RGD:9590236
G Kat2b lysine acetyltransferase 2B JBrowse link 9 4,440,982 4,492,949 RGD:9590266
G Kat5 lysine acetyltransferase 5 JBrowse link 1 220,967,795 220,974,596 RGD:9588482
RGD:13792537
G Kat6a lysine acetyltransferase 6A JBrowse link 16 73,942,669 74,020,750 RGD:13792537
G Kat7 lysine acetyltransferase 7 JBrowse link 10 83,095,067 83,128,342 RGD:13792537
G Kat8 lysine acetyltransferase 8 JBrowse link 1 199,360,645 199,372,925 RGD:13792537
G Kdm1a lysine demethylase 1A JBrowse link 5 154,909,003 154,965,171 RGD:1624291
RGD:13792537
RGD:9588312
G Kdm1b lysine demethylase 1B JBrowse link 17 17,987,972 18,028,808 RGD:13792537
G Kdm2a lysine demethylase 2A JBrowse link 1 219,566,130 219,642,294 RGD:1624291
G Kdm4c lysine demethylase 4C JBrowse link 5 90,800,139 91,012,662 RGD:1624291
RGD:9587433
G Kdm6a lysine demethylase 6A JBrowse link X 4,805,493 4,945,788 RGD:13792537
G Kdm6b lysine demethylase 6B JBrowse link 10 56,000,494 56,009,582 RGD:13792537
G Klf1 Kruppel like factor 1 JBrowse link 19 26,016,289 26,019,557 RGD:1624291
G Klf2 Kruppel-like factor 2 JBrowse link 16 19,223,087 19,225,037 RGD:1624291
G Klf4 Kruppel like factor 4 JBrowse link 5 72,283,311 72,287,669 RGD:1624291
G Klhdc3 kelch domain containing 3 JBrowse link 9 16,612,429 16,618,761 RGD:1624291
RGD:13792537
G Ldb1 LIM domain binding 1 JBrowse link 1 265,772,729 265,798,442 RGD:1624291
G LOC100363125 rCG42854-like JBrowse link X 13,991,860 13,992,606 RGD:13792537
G LOC100910554 histone H2A type 1-like JBrowse link 17 44,738,552 44,739,195 RGD:13792537
G LOC100910833 histone-lysine N-methyltransferase setd3-like JBrowse link 6 131,602,149 131,650,424 RGD:13792537
G LOC100911837 protein HIRA-like JBrowse link 11 85,802,536 85,896,680 RGD:13792537
G LOC102548927 high mobility group protein B4-like JBrowse link X 53,234,043 53,235,377 RGD:13792537
G LOC103690002 histone H2A.J JBrowse link 4 170,148,955 170,149,479 RGD:13792537
G LOC103690190 histone H2A type 1-E JBrowse link 17 44,747,686 44,748,229 RGD:13792537
G LOC108349258 high mobility group protein B4-like JBrowse link X 142,344,626 142,345,439 RGD:13792537
G LOC108350839 high mobility group protein B1-like JBrowse link 4 92,431,517 92,432,354 RGD:13792537
G LOC680063 similar to histone 2a RGD:13792537
G LOC681067 similar to RIKEN cDNA 1700001F22 JBrowse link X 132,424,185 132,424,955 RGD:13792537
G LOC684773 similar to histone 2a JBrowse link 17 43,777,353 43,777,827 RGD:13792537
G LOC688583 similar to High mobility group protein 4 (HMG-4) (High mobility group protein 2a) (HMG-2a) JBrowse link 14 51,458,436 51,462,755 RGD:13792537
G LOC691030 similar to RIKEN cDNA 1700001F22 JBrowse link X 130,794,079 130,794,824 RGD:13792537
G Macroh2a1 macroH2A.1 histone JBrowse link 17 9,282,109 9,344,698 RGD:1600115
RGD:13792537
RGD:1624291
G Macroh2a2 macroH2A.2 histone JBrowse link 20 31,352,924 31,402,483 RGD:1624291
RGD:13792537
G Max MYC associated factor X JBrowse link 6 99,984,260 100,011,460 RGD:1624291
G Mbd1 methyl-CpG binding domain protein 1 JBrowse link 18 70,248,568 70,263,190 RGD:9588634
G Mbd2 methyl-CpG binding domain protein 2 JBrowse link 18 65,814,026 65,885,115 RGD:9589119
RGD:1624291
G Mcmbp minichromosome maintenance complex binding protein JBrowse link 1 200,118,226 200,163,106 RGD:13792537
G Mecp2 methyl CpG binding protein 2 JBrowse link X 156,650,389 156,713,813 RGD:1601325
G Mef2a myocyte enhancer factor 2a JBrowse link 1 128,207,715 128,341,681 RGD:1624291
RGD:13792537
RGD:1600115
G Mef2b myocyte enhancer factor 2B JBrowse link 16 21,001,204 21,017,651 RGD:13792537
G Mef2c myocyte enhancer factor 2C JBrowse link 2 11,658,534 11,822,788 RGD:13792537
G Mef2d myocyte enhancer factor 2D JBrowse link 2 187,511,775 187,541,285 RGD:13792537
G Men1 menin 1 JBrowse link 1 221,704,394 221,710,343 RGD:1624291
G Mixl1 Mix paired-like homeobox 1 JBrowse link 13 97,278,258 97,282,299 RGD:1624291
G Mre11 MRE11 homolog, double strand break repair nuclease JBrowse link 8 13,304,355 13,350,329 RGD:2300257
G Msh6 mutS homolog 6 JBrowse link 6 11,644,565 11,662,389 RGD:1624291
G Muc1 mucin 1, cell surface associated JBrowse link 2 188,543,137 188,547,874 RGD:1624291
G Mxd1 max dimerization protein 1 JBrowse link 4 118,451,752 118,472,150 RGD:1624291
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:1624291
G Myocd myocardin JBrowse link 10 51,682,053 51,781,458 RGD:1600115
RGD:1624291
G Myod1 myogenic differentiation 1 JBrowse link 1 102,396,538 102,399,248 RGD:1624291
RGD:1600115
G Nacc2 NACC family member 2 JBrowse link 3 3,508,084 3,574,787 RGD:1624291
RGD:1600115
G Nasp nuclear autoantigenic sperm protein JBrowse link 5 135,446,485 135,472,113 RGD:1624291
G Ncoa1 nuclear receptor coactivator 1 JBrowse link 6 28,677,563 28,931,844 RGD:1624291
G Ncoa3 nuclear receptor coactivator 3 JBrowse link 3 162,692,176 162,788,582 RGD:1624291
RGD:1600115
G Ncor1 nuclear receptor co-repressor 1 JBrowse link 10 48,629,121 48,772,890 RGD:1624291
RGD:13792537
G Ncor2 nuclear receptor co-repressor 2 JBrowse link 12 36,871,917 37,033,701 RGD:1624291
RGD:13792537
G Nfatc1 nuclear factor of activated T-cells 1 JBrowse link 18 77,203,517 77,322,690 RGD:1624291
G Nfatc2 nuclear factor of activated T-cells 2 JBrowse link 3 165,241,750 165,374,644 RGD:1624291
G Nipbl NIPBL, cohesin loading factor JBrowse link 2 57,508,830 57,676,197 RGD:13792537
G Npm2 nucleophosmin/nucleoplasmin 2 JBrowse link 15 52,337,457 52,345,849 RGD:1624291
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 JBrowse link 10 86,683,875 86,690,815 RGD:1624291
RGD:1600115
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 JBrowse link 3 80,004,130 80,014,197 RGD:1624291
G Nrip1 nuclear receptor interacting protein 1 JBrowse link 11 14,658,225 14,742,478 RGD:1624291
G Nthl1 nth-like DNA glycosylase 1 JBrowse link 10 13,996,660 14,002,827 RGD:1600115
RGD:1624291
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 JBrowse link 13 48,679,726 48,709,663 RGD:1624291
G Pawr pro-apoptotic WT1 regulator JBrowse link 7 51,273,764 51,353,700 RGD:1624291
RGD:1600115
G Pax6 paired box 6 JBrowse link 3 95,700,241 95,728,682 RGD:1624291
RGD:1600115
RGD:8552352
G Pcgf2 polycomb group ring finger 2 JBrowse link 10 85,631,829 85,642,591 RGD:1624291
G Phf10 PHD finger protein 10 JBrowse link 1 56,951,516 56,967,893 RGD:13792537
G Phox2a paired-like homeobox 2a JBrowse link 1 166,893,734 166,898,252 RGD:1624291
RGD:1600115
G Phox2b paired-like homeobox 2b JBrowse link 14 42,711,169 42,718,707 RGD:1624291
G Plcb1 phospholipase C beta 1 JBrowse link 3 127,721,244 128,419,565 RGD:1624291
RGD:1600115
G Pogz pogo transposable element derived with ZNF domain JBrowse link 2 195,995,322 196,041,500 RGD:1624291
G Polr3d RNA polymerase III subunit D JBrowse link 15 52,129,471 52,134,140 RGD:1624291
G Polr3g RNA polymerase III subunit G JBrowse link 2 9,537,642 9,578,551 RGD:1624291
RGD:13792537
G Polr3gl RNA polymerase III subunit G like JBrowse link 2 198,698,044 198,719,609 RGD:1624291
RGD:13792537
G Pou4f1 POU class 4 homeobox 1 JBrowse link 15 88,618,255 88,622,712 RGD:1624291
RGD:1600115
G Pou5f1 POU class 5 homeobox 1 JBrowse link 20 3,747,231 3,751,994 RGD:1624291
RGD:1600115
G Ppard peroxisome proliferator-activated receptor delta JBrowse link 20 7,818,289 7,883,482 RGD:1624291
G Ppp1r10 protein phosphatase 1, regulatory subunit 10 JBrowse link 20 3,329,677 3,344,286 RGD:633715
G Psip1 PC4 and SFRS1 interacting protein 1 JBrowse link 5 101,555,691 101,588,659 RGD:1600115
RGD:1624291
G Pus1 pseudouridine synthase 1 JBrowse link 12 51,936,721 51,945,930 RGD:1624291
G Rad17 RAD17 checkpoint clamp loader component JBrowse link 2 30,634,353 30,664,618 RGD:13792537
G Rad50 RAD50 double strand break repair protein JBrowse link 10 39,002,130 39,054,042 RGD:2300257
RGD:13792537
G Rad51 RAD51 recombinase JBrowse link 3 110,918,240 110,942,920 RGD:1624291
G Rad51ap1 RAD51 associated protein 1 JBrowse link 4 159,469,803 159,482,869 RGD:1624291
G Rara retinoic acid receptor, alpha JBrowse link 10 86,838,819 86,884,224 RGD:1624291
G Rarg retinoic acid receptor, gamma JBrowse link 7 143,840,739 143,863,206 RGD:1624291
G Rbbp4 RB binding protein 4, chromatin remodeling factor JBrowse link 5 147,499,880 147,535,240 RGD:1624291
G Rcc1 regulator of chromosome condensation 1 JBrowse link 5 150,508,840 150,531,062 RGD:1624291
RGD:13792537
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:11059577
RGD:1624291
G Rfx3 regulatory factor X3 JBrowse link 1 245,853,332 246,110,648 RGD:1624291
G RGD1559962 similar to High mobility group protein 2 (HMG-2) JBrowse link 1 20,416,735 20,417,959 RGD:1600115
RGD:13792537
G RGD1560585 similar to RIKEN cDNA 1700001F22 JBrowse link X 144,001,166 144,001,891 RGD:13792537
G RGD1561558 similar to RIKEN cDNA 1700001F22 JBrowse link X 158,261,123 158,261,953 RGD:13792537
G RGD1566225 similar to RIKEN cDNA 1700001F22 JBrowse link X 137,197,195 137,197,990 RGD:13792537
G Rif1 replication timing regulatory factor 1 JBrowse link 3 37,599,540 37,648,818 RGD:1624291
G Rsf1 remodeling and spacing factor 1 JBrowse link 1 162,549,222 162,671,962 RGD:13792537
G Runx2 RUNX family transcription factor 2 JBrowse link 9 18,564,743 18,773,092 RGD:1624291
RGD:1600115
G Runx3 RUNX family transcription factor 3 JBrowse link 5 153,507,093 153,531,137 RGD:1624291
G Rxra retinoid X receptor alpha JBrowse link 3 6,272,560 6,295,354 RGD:1624291
RGD:1600115
G Scml2 Scm polycomb group protein like 2 JBrowse link X 35,305,235 35,431,271 RGD:1624291
G Setd1a SET domain containing 1A, histone lysine methyltransferase JBrowse link 1 199,222,584 199,247,993 RGD:1624291
G Setd3 SET domain containing 3, actin histidine methyltransferase JBrowse link 6 132,023,128 132,090,072 RGD:1624291
RGD:13792537
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 JBrowse link 2 196,495,867 196,527,412 RGD:1624291
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:1624291
G Slx4 SLX4 structure-specific endonuclease subunit JBrowse link 10 11,787,756 11,808,326 RGD:1624291
G Smad2 SMAD family member 2 JBrowse link 18 72,550,107 72,612,078 RGD:1624291
G Smad3 SMAD family member 3 JBrowse link 8 68,569,530 68,678,349 RGD:1624291
G Smad4 SMAD family member 4 JBrowse link 18 69,626,682 69,657,373 RGD:1624291
RGD:1600115
G Smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 JBrowse link X 134,634,651 134,719,503 RGD:1624291
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 JBrowse link 1 244,615,811 244,783,736 RGD:1624291
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:1624291
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 JBrowse link 4 7,076,710 7,108,334 RGD:1624291
G Snai2 snail family transcriptional repressor 2 JBrowse link 11 90,404,421 90,406,730 RGD:1624291
G Sox18 SRY-box transcription factor 18 JBrowse link 3 177,177,237 177,179,039 RGD:1624291
G Sp1 Sp1 transcription factor JBrowse link 7 144,014,173 144,044,635 RGD:1624291
RGD:11059577
G Spi1 Spi-1 proto-oncogene JBrowse link 3 79,918,127 79,937,708 RGD:1624291
G Srf serum response factor JBrowse link 9 16,737,637 16,747,226 RGD:1624291
G Ssrp1 structure specific recognition protein 1 JBrowse link 3 72,447,516 72,457,621 RGD:13792537
G Stat1 signal transducer and activator of transcription 1 JBrowse link 9 54,287,540 54,327,958 RGD:1624291
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:1624291
G Stat6 signal transducer and activator of transcription 6 JBrowse link 7 70,946,228 70,963,542 RGD:1624291
G Taf1 TATA-box binding protein associated factor 1 JBrowse link X 71,412,291 71,486,456 RGD:1624291
G Taf4 TATA-box binding protein associated factor 4 JBrowse link 3 175,300,842 175,364,655 RGD:1624291
G Taf5 TATA-box binding protein associated factor 5 JBrowse link 1 266,844,480 266,859,965 RGD:1624291
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor JBrowse link 5 133,864,401 133,878,604 RGD:1624291
G Tbp TATA box binding protein JBrowse link 1 57,491,381 57,509,335 RGD:1624291
G Tbx19 T-box transcription factor 19 JBrowse link 13 83,403,263 83,426,305 RGD:13792537
G Tbx6 T-box transcription factor 6 JBrowse link 1 198,214,797 198,218,706 RGD:1624291
G Tbxt T-box transcription factor T JBrowse link 1 52,887,067 52,900,691 RGD:1624291
RGD:13792537
G Tcf12 transcription factor 12 JBrowse link 8 78,343,634 78,657,738 RGD:1624291
G Tcf3 transcription factor 3 JBrowse link 7 12,146,642 12,168,400 RGD:1624291
RGD:1600115
G Tcf4 transcription factor 4 JBrowse link 18 65,285,320 65,507,983 RGD:1624291
G Tcf7l2 transcription factor 7 like 2 JBrowse link 1 276,686,911 276,730,517 RGD:1624291
G Thrb thyroid hormone receptor beta JBrowse link 15 8,890,578 9,239,815 RGD:1624291
RGD:1600115
G Timeless timeless circadian regulator JBrowse link 7 2,643,288 2,667,329 RGD:1624291
RGD:13792537
RGD:1600115
G Tipin timeless interacting protein JBrowse link 8 69,753,363 69,768,640 RGD:1624291
RGD:1600115
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
G Tp63 tumor protein p63 JBrowse link 11 78,234,853 78,456,559 RGD:1624291
G Trps1 transcriptional repressor GATA binding 1 JBrowse link 7 90,085,895 90,320,430 RGD:1624291
G Ttc21b tetratricopeptide repeat domain 21B JBrowse link 3 52,286,794 52,361,060 RGD:1624291
G Ube2a ubiquitin-conjugating enzyme E2A JBrowse link X 123,486,988 123,497,726 RGD:1624291
RGD:13792537
G Ube2b ubiquitin-conjugating enzyme E2B JBrowse link 10 37,439,947 37,454,867 RGD:1624291
RGD:13792537
G Ube2u ubiquitin conjugating enzyme E2 U JBrowse link 5 118,574,647 118,642,810 RGD:13792537
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 JBrowse link 9 10,738,211 10,758,403 RGD:1624291
RGD:1600115
G Usf1 upstream transcription factor 1 JBrowse link 13 89,797,750 89,805,561 RGD:1624291
G Usp3 ubiquitin specific peptidase 3 JBrowse link 8 72,207,970 72,284,871 RGD:1624291
G Wbp2 WW domain binding protein 2 JBrowse link 10 104,629,563 104,637,906 RGD:1600115
RGD:1624291
G Xrcc1 X-ray repair cross complementing 1 JBrowse link 1 81,412,635 81,441,680 RGD:1624291
G Yy1 YY1 transcription factor JBrowse link 6 132,702,443 132,726,848 RGD:1624291
RGD:13792537
G Yy2 YY2 transcription factor JBrowse link X 40,285,923 40,289,545 RGD:13792537
G Zeb2 zinc finger E-box binding homeobox 2 JBrowse link 3 29,857,289 29,985,932 RGD:1624291
G Zfp385a zinc finger protein 385A JBrowse link 7 144,939,616 144,966,364 RGD:1624291
nuclear euchromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07018272.1 RGD:1600115
G AABR07034940.2 RGD:1600115
G AABR07062138.1 RGD:1600115
G Alkbh1 alkB homolog 1, histone H2A dioxygenase JBrowse link 6 111,456,096 111,476,829 RGD:1624291
RGD:13792537
G Ash2l ASH2 like histone lysine methyltransferase complex subunit JBrowse link 16 71,011,315 71,033,171 RGD:1624291
G Cbx3 chromobox 3 JBrowse link 4 81,243,809 81,257,898 RGD:1624291
G Cecr2 CECR2, histone acetyl-lysine reader JBrowse link 4 153,217,521 153,327,153 RGD:1624291
G Creb1 cAMP responsive element binding protein 1 JBrowse link 9 71,229,753 71,298,994 RGD:1624291
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:1624291
RGD:1600115
G H1f0 H1 histone family, member 0 JBrowse link 7 120,260,776 120,262,636 RGD:1624291
G H1f1 H1.1 linker histone, cluster member JBrowse link 17 43,614,101 43,614,844 RGD:1624291
RGD:13792537
G H1f2 H1.2 linker histone, cluster member JBrowse link 17 43,638,938 43,640,445 RGD:1624291
RGD:13792537
G H1f4 H1.4 linker histone, cluster member JBrowse link 17 43,734,461 43,735,120 RGD:13792537
G H1f5 H1.5 linker histone, cluster member JBrowse link 17 44,766,313 44,766,981 RGD:13792537
G H1f6 H1.6 linker histone, cluster member JBrowse link 17 43,675,190 43,675,934 RGD:13792537
G H2az1 H2A.Z variant histone 1 JBrowse link 2 243,105,224 243,107,333 RGD:1624291
G H4f3 H1.3 linker histone, cluster member JBrowse link 17 43,797,711 43,798,450 RGD:1624291
RGD:13792537
G Hils1 histone linker H1 domain, spermatid-specific 1 JBrowse link 10 82,775,691 82,776,487 RGD:13792537
G Jun Jun proto-oncogene, AP-1 transcription factor subunit JBrowse link 5 114,011,184 114,014,277 RGD:1624291
G Klf4 Kruppel like factor 4 JBrowse link 5 72,283,311 72,287,669 RGD:1624291
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:1624291
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 JBrowse link 7 30,003,429 30,162,095 RGD:1624291
RGD:1600115
G Nsmf NMDA receptor synaptonuclear signaling and neuronal migration factor JBrowse link 3 2,262,173 2,270,996 RGD:8553324
G Polr2a RNA polymerase II subunit A JBrowse link 10 56,339,277 56,364,888 RGD:1624291
G Pou4f2 POU class 4 homeobox 2 JBrowse link 19 33,160,180 33,163,821 RGD:1624291
G Ppargc1a PPARG coactivator 1 alpha JBrowse link 14 63,095,291 63,190,688 RGD:10059655
G Prdx1 peroxiredoxin 1 JBrowse link 5 135,536,413 135,551,986 RGD:2291802
G Rbmx RNA binding motif protein, X-linked JBrowse link X 159,881,835 159,891,405 RGD:1624291
G Rbmxl1 RBMX like 1 JBrowse link 19 33,081,473 33,084,988 RGD:1600115
G Ruvbl2 RuvB-like AAA ATPase 2 JBrowse link 1 101,413,766 101,426,970 RGD:1624291
G Setd1a SET domain containing 1A, histone lysine methyltransferase JBrowse link 1 199,222,584 199,247,993 RGD:1624291
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:1624291
RGD:13792537
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:1624291
G Tbp TATA box binding protein JBrowse link 1 57,491,381 57,509,335 RGD:1624291
G Tcf7 transcription factor 7 JBrowse link 10 37,616,033 37,646,027 RGD:1624291
G Trim24 tripartite motif-containing 24 JBrowse link 4 65,632,278 65,684,746 RGD:1624291
G Trim28 tripartite motif-containing 28 JBrowse link 1 65,544,369 65,551,043 RGD:1624291
G Trnp1 TMF1-regulated nuclear protein 1 JBrowse link 5 151,703,139 151,709,988 RGD:1624291
nuclear heterochromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G A1cf APOBEC1 complementation factor JBrowse link 1 250,426,027 250,514,245 RGD:631910
G Aldoa aldolase, fructose-bisphosphate A JBrowse link 1 198,228,387 198,233,988 RGD:10679992
G Bend3 BEN domain containing 3 JBrowse link 20 48,248,193 48,270,905 RGD:1624291
RGD:13792537
G Cbx3 chromobox 3 JBrowse link 4 81,243,809 81,257,898 RGD:1624291
G Cbx5 chromobox 5 JBrowse link 7 144,819,673 144,865,014 RGD:1624291
G Dnmt3a DNA methyltransferase 3 alpha JBrowse link 6 28,205,375 28,346,052 RGD:1624291
G Dnmt3b DNA methyltransferase 3 beta JBrowse link 3 149,131,541 149,170,061 RGD:1624291
G Dnmt3l DNA methyltransferase 3 like JBrowse link 20 11,344,513 11,359,090 RGD:1624291
RGD:1600115
G Eme1 essential meiotic structure-specific endonuclease 1 JBrowse link 10 82,366,820 82,375,510 RGD:1624291
G Foxc1 forkhead box C1 JBrowse link 17 33,947,501 33,951,484 RGD:1624291
G H1f4 H1.4 linker histone, cluster member JBrowse link 17 43,734,461 43,735,120 RGD:1624291
G H1f5 H1.5 linker histone, cluster member JBrowse link 17 44,766,313 44,766,981 RGD:1624291
G H2az1 H2A.Z variant histone 1 JBrowse link 2 243,105,224 243,107,333 RGD:1624291
G Igfbp3 insulin-like growth factor binding protein 3 JBrowse link 14 87,457,647 87,465,374 RGD:10402776
G Il33 interleukin 33 JBrowse link 1 248,112,611 248,147,030 RGD:1600115
RGD:1624291
G Kmt5c lysine methyltransferase 5C JBrowse link 1 72,666,662 72,674,271 RGD:1624291
G Mphosph8 M-phase phosphoprotein 8 JBrowse link 15 36,918,843 36,946,712 RGD:1624291
RGD:1600115
G Psip1 PC4 and SFRS1 interacting protein 1 JBrowse link 5 101,555,691 101,588,659 RGD:8554215
RGD:1600115
RGD:1624291
G Satb1 SATB homeobox 1 JBrowse link 9 2,181,135 2,277,949 RGD:1624291
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:1624291
RGD:13792537
G Sirt2 sirtuin 2 JBrowse link 1 86,948,866 86,971,954 RGD:8553877
G Suv39h2 suppressor of variegation 3-9 homolog 2 JBrowse link 17 78,762,897 78,782,016 RGD:1624291
G Tcp1 t-complex 1 JBrowse link 1 48,025,664 48,033,343 RGD:1624291
G Tnks1bp1 tankyrase 1 binding protein 1 JBrowse link 3 72,458,520 72,483,206 RGD:1624291
G Trim28 tripartite motif-containing 28 JBrowse link 1 65,544,369 65,551,043 RGD:1624291
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 JBrowse link 9 10,738,211 10,758,403 RGD:1624291
RGD:13792537
RGD:1600115
G Uhrf2 ubiquitin like with PHD and ring finger domains 2 JBrowse link 1 248,228,496 248,291,984 RGD:1624291
RGD:13792537
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:1580360
G Zfp57 zinc finger protein 57 JBrowse link 20 2,014,177 2,020,488 RGD:1624291
nuclear nucleosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cenpa centromere protein A JBrowse link 6 27,072,259 27,080,863 RGD:1624291
G H1f4 H1.4 linker histone, cluster member JBrowse link 17 43,734,461 43,735,120 RGD:12793017
G H2afb3 H2A histone family, member B3 JBrowse link X 88,602,135 88,602,485 RGD:1624291
G H2bc1 H2B clustered histone 1 JBrowse link 17 43,423,111 43,423,580 RGD:1624291
G H3c1 H3 clustered histone 1 JBrowse link 17 43,616,206 43,616,735 RGD:1624291
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:1624291
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:1624291
G H3f4 H3.4 histone JBrowse link 10 45,304,696 45,305,106 RGD:1624291
G H4f16 H4 histone 16 JBrowse link 17 43,821,122 43,821,587 RGD:1624291
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 JBrowse link 17 43,814,773 43,815,183 RGD:1624291
G Hist1h3b histone cluster 1, H3b JBrowse link 17 44,760,023 44,764,058 RGD:1624291
G Hist1h4b histone cluster 1 H4 family member B JBrowse link 17 44,522,144 44,526,587 RGD:1624291
G Hist1h4m histone cluster 1, H4m RGD:1624291
G Hist2h4 histone cluster 2, H4 JBrowse link 2 198,411,955 198,412,350 RGD:1624291
G Hist2h4a histone cluster 2 H4 family member A JBrowse link 4 170,800,539 170,800,979 RGD:1624291
G Irf4 interferon regulatory factor 4 JBrowse link 17 34,886,746 34,905,191 RGD:1624291
G LOC100912290 histone H4-like JBrowse link 4 170,092,457 170,117,607 RGD:1624291
G LOC102548682 histone H4-like JBrowse link 17 43,616,218 43,673,659 RGD:1624291
G LOC102551184 histone H4-like JBrowse link 17 43,770,198 43,821,579 RGD:1624291
G LOC684819 similar to H3 histone, family 2 isoform 2 JBrowse link 17 43,794,397 43,795,493 RGD:1624291
G Mphosph8 M-phase phosphoprotein 8 JBrowse link 15 36,918,843 36,946,712 RGD:1624291
RGD:1600115
G RGD1562378 histone H4 variant H4-v.1 JBrowse link 4 170,762,862 170,763,962 RGD:1624291
G Tcf3 transcription factor 3 JBrowse link 7 12,146,642 12,168,400 RGD:1624291
G Tnp1 transition protein 1 JBrowse link 9 80,294,837 80,295,446 RGD:1624291
RGD:1600115
G Tnp2 transition protein 2 JBrowse link 10 4,953,898 4,954,626 RGD:1600115
RGD:1624291
nuclear pericentric heterochromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atrx ATRX, chromatin remodeler JBrowse link X 76,820,110 76,979,155 RGD:1624291
RGD:1600115
G Cbx3 chromobox 3 JBrowse link 4 81,243,809 81,257,898 RGD:1624291
G Cenpa centromere protein A JBrowse link 6 27,072,259 27,080,863 RGD:1624291
G Cenpb centromere protein B JBrowse link 3 123,720,888 123,723,520 RGD:1624291
G Cenpc centromere protein C JBrowse link 14 23,611,909 23,670,314 RGD:1624291
G Esco2 establishment of sister chromatid cohesion N-acetyltransferase 2 JBrowse link 15 42,500,929 42,519,019 RGD:1624291
G Ikzf1 IKAROS family zinc finger 1 JBrowse link 14 91,782,281 91,867,828 RGD:1624291
G Kdm4b lysine demethylase 4B JBrowse link 9 10,656,035 10,734,127 RGD:1624291
G Ncapd3 non-SMC condensin II complex, subunit D3 JBrowse link 8 28,075,629 28,145,024 RGD:1624291
nuclear subtelomeric heterochromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atrx ATRX, chromatin remodeler JBrowse link X 76,820,110 76,979,155 RGD:1624291
RGD:1600115
nuclear telomeric heterochromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sirt6 sirtuin 6 JBrowse link 7 10,937,622 10,943,048 RGD:1624291
RGD:13792537
G Sirt7 sirtuin 7 JBrowse link 10 109,796,046 109,802,821 RGD:13792537
nucleolus organizer region term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sirt7 sirtuin 7 JBrowse link 10 109,796,046 109,802,821 RGD:1624291
nucleosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07012583.2 RGD:1600115
G AABR07022134.1 RGD:1600115
G AABR07027811.2 RGD:1600115
G AABR07040686.1 RGD:1600115
G AABR07044065.1 RGD:1600115
G AABR07052692.1 RGD:1600115
G AABR07062859.1 RGD:1600115
G AC119603.1 RGD:1600115
G Glyr1 glyoxylate reductase 1 homolog JBrowse link 10 10,725,830 10,759,471 RGD:1624291
RGD:1600115
G H1f0 H1 histone family, member 0 JBrowse link 7 120,260,776 120,262,636 RGD:1600115
G H1f1 H1.1 linker histone, cluster member JBrowse link 17 43,614,101 43,614,844 RGD:1600115
G H1f10 H1.10 linker histone JBrowse link 4 119,889,016 119,892,661 RGD:1600115
G H1f2 H1.2 linker histone, cluster member JBrowse link 17 43,638,938 43,640,445 RGD:1600115
G H1f5 H1.5 linker histone, cluster member JBrowse link 17 44,766,313 44,766,981 RGD:1600115
G H1f6 H1.6 linker histone, cluster member JBrowse link 17 43,675,190 43,675,934 RGD:1600115
G H1f8 H1.8 linker histone JBrowse link 4 147,844,658 147,849,779 RGD:1600115
G H2ac1 H2A clustered histone 1 JBrowse link 17 43,422,454 43,422,846 RGD:1600115
G H2ac20 H2A clustered histone 20 JBrowse link 2 198,360,271 198,360,735 RGD:1600115
G H2ac21 H2A clustered histone 21 JBrowse link 2 198,359,754 198,360,146 RGD:1600115
G H2aj H2A.J histone JBrowse link 4 170,766,900 170,767,384 RGD:1600115
G H2ax H2A.X variant histone JBrowse link 8 48,665,652 48,666,981 RGD:1600115
G H2az1 H2A.Z variant histone 1 JBrowse link 2 243,105,224 243,107,333 RGD:1600115
G H2az2 H2A.Z variant histone 2 JBrowse link 14 86,687,782 86,706,639 RGD:1600115
G H2bc1 H2B clustered histone 1 JBrowse link 17 43,423,111 43,423,580 RGD:1624291
RGD:1600115
G H2bc12 H2B clustered histone 12 JBrowse link 17 44,527,421 44,527,801 RGD:1600115
G H2bc9 H2B clustered histone 9 JBrowse link 17 44,519,815 44,520,269 RGD:1600115
G H2bu1 H2B.U histone 1 JBrowse link 10 45,296,638 45,297,385 RGD:1600115
G H3c1 H3 clustered histone 1 JBrowse link 17 43,616,206 43,616,735 RGD:1624291
RGD:1600115
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:1624291
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:1624291
G H3f3c H3 histone family member 3C JBrowse link 7 94,777,659 94,778,656 RGD:1600115
RGD:1624291
G H3f4 H3.4 histone JBrowse link 10 45,304,696 45,305,106 RGD:1624291
G H4f16 H4 histone 16 JBrowse link 17 43,821,122 43,821,587 RGD:1624291
G H4f3 H1.3 linker histone, cluster member JBrowse link 17 43,797,711 43,798,450 RGD:1600115
G Hils1 histone linker H1 domain, spermatid-specific 1 JBrowse link 10 82,775,691 82,776,487 RGD:1624291
G Hist1h2ac histone cluster 1 H2A family member C JBrowse link 17 44,520,484 44,521,142 RGD:1600115
G Hist1h2af histone cluster 1 H2A family member F JBrowse link 17 43,627,237 43,627,629 RGD:1600115
G Hist1h2ah histone cluster 1 H2A family member H JBrowse link 17 43,632,354 43,632,851 RGD:1600115
G Hist1h2ai histone cluster 1, H2ai JBrowse link 17 44,758,412 44,759,675 RGD:1600115
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 JBrowse link 17 43,814,773 43,815,183 RGD:1624291
RGD:1600115
G hist1h2ail2 histone cluster 1, H2ai-like2 JBrowse link 17 44,794,087 44,794,563 RGD:1600115
G Hist1h2ak histone cluster 1, H2ak JBrowse link 17 44,840,990 44,841,382 RGD:1600115
G Hist1h2an histone cluster 1, H2an JBrowse link 17 43,779,174 43,779,775 RGD:1600115
G Hist1h2ao histone cluster 1, H2ao JBrowse link 17 44,744,534 44,744,931 RGD:1600115
G Hist1h2bc histone cluster 1, H2bc JBrowse link 17 44,736,184 44,738,393 RGD:1600115
G Hist1h2bd histone cluster 1 H2B family member D JBrowse link 17 44,833,924 44,834,305 RGD:1600115
G Hist1h2bg histone cluster 1, H2bg JBrowse link 17 43,817,316 43,817,717 RGD:1600115
G Hist1h2bl histone cluster 1 H2B family member l JBrowse link 17 44,748,445 44,748,910 RGD:1600115
G Hist1h2bo histone cluster 1 H2B family member o JBrowse link 17 44,756,557 44,758,170 RGD:1600115
G Hist1h2bq histone cluster 1 H2B family member Q JBrowse link 17 43,679,925 43,689,311 RGD:1600115
G Hist1h3b histone cluster 1, H3b JBrowse link 17 44,760,023 44,764,058 RGD:1624291
RGD:1600115
G Hist1h4b histone cluster 1 H4 family member B JBrowse link 17 44,522,144 44,526,587 RGD:1624291
G Hist1h4m histone cluster 1, H4m RGD:1624291
G Hist2h2aa2 histone cluster 2 H2A family member A2 JBrowse link 2 198,381,678 198,382,247 RGD:1600115
G Hist2h2aa3 histone cluster 2 H2A family member A3 JBrowse link 2 198,388,766 198,389,293 RGD:1600115
G Hist2h2be histone cluster 2 H2B family member E JBrowse link 2 198,360,837 198,363,399 RGD:1600115
G Hist2h3c2 histone cluster 2 H3 family member C2 JBrowse link 2 198,390,024 198,418,075 RGD:1624291
G Hist2h4 histone cluster 2, H4 JBrowse link 2 198,411,955 198,412,350 RGD:1624291
G Hist2h4a histone cluster 2 H4 family member A JBrowse link 4 170,800,539 170,800,979 RGD:1624291
G Hist3h2a histone cluster 3, H2a JBrowse link 10 45,297,603 45,299,155 RGD:1600115
G Hist3h2ba histone cluster 3, H2ba JBrowse link 10 45,289,741 45,290,370 RGD:1600115
G Hp1bp3 heterochromatin protein 1, binding protein 3 JBrowse link 5 156,581,732 156,609,059 RGD:1600115
G Hypm huntingtin interacting protein M JBrowse link X 13,989,401 13,989,955 RGD:1600115
G Kat6a lysine acetyltransferase 6A JBrowse link 16 73,942,669 74,020,750 RGD:1600115
G Kat6b lysine acetyltransferase 6B JBrowse link 15 2,811,933 2,966,833 RGD:1600115
G Kdm1b lysine demethylase 1B JBrowse link 17 17,987,972 18,028,808 RGD:1624291
G LOC100363125 rCG42854-like JBrowse link X 13,991,860 13,992,606 RGD:1600115
G LOC100364835 histone cluster 1, H2bd-like JBrowse link 17 43,764,654 43,765,101 RGD:1600115
G LOC100365043 histone cluster 1, H2bd-like JBrowse link 17 43,808,617 43,817,817 RGD:1600115
G LOC100910200 histone H2B type 1-C/E/G-like JBrowse link 17 44,792,982 44,793,896 RGD:1600115
G LOC100910554 histone H2A type 1-like JBrowse link 17 44,738,552 44,739,195 RGD:1600115
G LOC100912290 histone H4-like JBrowse link 4 170,092,457 170,117,607 RGD:1624291
G LOC102548682 histone H4-like JBrowse link 17 43,616,218 43,673,659 RGD:1624291
G LOC102549061 histone H2B type 1-N-like JBrowse link 17 43,627,872 43,628,518 RGD:1600115
G LOC102551184 histone H4-like JBrowse link 17 43,770,198 43,821,579 RGD:1624291
G LOC103690002 histone H2A.J JBrowse link 4 170,148,955 170,149,479 RGD:1600115
G LOC103690190 histone H2A type 1-E JBrowse link 17 44,747,686 44,748,229 RGD:1600115
G LOC103693372 histone H3.3-like JBrowse link 15 19,575,474 19,577,887 RGD:1600115
G LOC680063 similar to histone 2a RGD:1600115
G LOC680322 similar to Histone H2A type 1 JBrowse link 17 44,527,990 44,528,557 RGD:1600115
G LOC684444 similar to HIStone family member (his-41) JBrowse link 2 29,247,748 29,248,259 RGD:1600115
G LOC684762 similar to CG31613-PA JBrowse link 17 43,776,018 43,776,779 RGD:1624291
G LOC684773 similar to histone 2a JBrowse link 17 43,777,353 43,777,827 RGD:1600115
G LOC684797 similar to Histone H2B 291B JBrowse link 17 43,778,481 43,778,990 RGD:1600115
G LOC684819 similar to H3 histone, family 2 isoform 2 JBrowse link 17 43,794,397 43,795,493 RGD:1624291
G Macroh2a1 macroH2A.1 histone JBrowse link 17 9,282,109 9,344,698 RGD:728409
RGD:1600115
G Macroh2a2 macroH2A.2 histone JBrowse link 20 31,352,924 31,402,483 RGD:1600115
G Prm1 protamine 1 JBrowse link 10 4,945,995 4,946,241 RGD:1600115
G Prm2 protamine 2 JBrowse link 10 4,950,484 4,950,920 RGD:1600115
G Prm3 protamine 3 JBrowse link 10 4,951,557 4,952,071 RGD:1600115
G RGD1562378 histone H4 variant H4-v.1 JBrowse link 4 170,762,862 170,763,962 RGD:1624291
G RGD1564447 similar to Zgc:56193 JBrowse link 9 46,951,420 46,951,862 RGD:1600115
G RGD1564548 similar to H3 histone, family 3B JBrowse link 7 109,411,189 109,412,189 RGD:1600115
G Shprh SNF2 histone linker PHD RING helicase JBrowse link 1 5,240,139 5,313,064 RGD:1600115
G Slf1 SMC5-SMC6 complex localization factor 1 JBrowse link 2 4,095,126 4,195,819 RGD:1624291
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 JBrowse link 6 3,105,443 3,182,977 RGD:1600115
G Sos2 SOS Ras/Rho guanine nucleotide exchange factor 2 JBrowse link 6 91,885,292 92,008,059 RGD:1600115
G Sphk2 sphingosine kinase 2 JBrowse link 1 101,692,972 101,700,604 RGD:1624291
G Tnp1 transition protein 1 JBrowse link 9 80,294,837 80,295,446 RGD:1624291
RGD:13792537
RGD:1600115
NuRD complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chd3 chromodomain helicase DNA binding protein 3 JBrowse link 10 55,943,467 55,970,417 RGD:1624291
G Chd4 chromodomain helicase DNA binding protein 4 JBrowse link 4 157,612,531 157,645,660 RGD:1624291
G Chd5 chromodomain helicase DNA binding protein 5 JBrowse link 5 169,519,212 169,572,059 RGD:1624291
RGD:1600115
G Csnk2a1 casein kinase 2 alpha 1 JBrowse link 3 147,713,808 147,760,375 RGD:1624291
G Gatad2a GATA zinc finger domain containing 2A JBrowse link 16 21,177,793 21,267,768 RGD:1624291
RGD:13792537
G Gatad2b GATA zinc finger domain containing 2B JBrowse link 2 189,654,871 189,735,056 RGD:13792537
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:1624291
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:1624291
G Mbd3 methyl-CpG binding domain protein 3 JBrowse link 7 12,179,046 12,186,251 RGD:1624291
G Mta1 metastasis associated 1 JBrowse link 6 137,911,302 137,950,066 RGD:1624291
RGD:13792537
RGD:1600115
G Mta2 metastasis associated 1 family, member 2 JBrowse link 1 225,140,863 225,149,584 RGD:1624291
RGD:13792537
G Mta3 metastasis associated 1 family, member 3 JBrowse link 6 6,904,449 7,036,929 RGD:1624291
RGD:13792537
G Rbbp4 RB binding protein 4, chromatin remodeling factor JBrowse link 5 147,499,880 147,535,240 RGD:1624291
G Rbbp7 RB binding protein 7, chromatin remodeling factor JBrowse link X 33,648,682 33,665,821 RGD:1624291
RGD:1600115
G Sall1 spalt-like transcription factor 1 JBrowse link 19 23,387,737 23,405,025 RGD:1624291
G Zbtb7a zinc finger and BTB domain containing 7a JBrowse link 7 11,429,266 11,446,119 RGD:1600115
RGD:1624291
NURF complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07028349.1 RGD:1600115
G Bptf bromodomain PHD finger transcription factor JBrowse link 10 95,248,573 95,350,162 RGD:1624291
RGD:1600115
G Hmgxb4 HMG-box containing 4 JBrowse link 19 14,352,644 14,390,499 RGD:1624291
G Rbbp4 RB binding protein 4, chromatin remodeling factor JBrowse link 5 147,499,880 147,535,240 RGD:1624291
G RGD1308134 similar to RIKEN cDNA 1110020A23 JBrowse link 10 56,843,846 56,848,265 RGD:1624291
RGD:13792537
G Smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 JBrowse link X 134,634,651 134,719,503 RGD:1624291
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 19 30,936,703 30,969,454 RGD:1624291
pericentric heterochromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atrx ATRX, chromatin remodeler JBrowse link X 76,820,110 76,979,155 RGD:1624291
G Baz1b bromodomain adjacent to zinc finger domain, 1B JBrowse link 12 24,478,882 24,536,851 RGD:1624291
G Cbx1 chromobox 1 JBrowse link 10 84,656,698 84,677,112 RGD:1624291
G Cbx5 chromobox 5 JBrowse link 7 144,819,673 144,865,014 RGD:1624291
G Cenpc centromere protein C JBrowse link 14 23,611,909 23,670,314 RGD:1624291
G Dnmt1 DNA methyltransferase 1 JBrowse link 8 21,922,515 21,968,495 RGD:1600115
RGD:1624291
G Hells helicase, lymphoid specific JBrowse link 1 257,901,856 257,953,889 RGD:1624291
G Ikzf1 IKAROS family zinc finger 1 JBrowse link 14 91,782,281 91,867,828 RGD:1624291
G Incenp inner centromere protein JBrowse link 1 225,923,448 225,953,384 RGD:1624291
G Kdm4a lysine demethylase 4A JBrowse link 5 136,967,650 137,014,402 RGD:1624291
G Kdm4c lysine demethylase 4C JBrowse link 5 90,800,139 91,012,662 RGD:1624291
G Kdm4d lysine demethylase 4D JBrowse link 8 12,968,192 12,993,651 RGD:1624291
G Kmt5c lysine methyltransferase 5C JBrowse link 1 72,666,662 72,674,271 RGD:1624291
G LOC100363125 rCG42854-like JBrowse link X 13,991,860 13,992,606 RGD:1624291
G Lrwd1 leucine-rich repeats and WD repeat domain containing 1 JBrowse link 12 23,574,234 23,587,262 RGD:1624291
G Macroh2a1 macroH2A.1 histone JBrowse link 17 9,282,109 9,344,698 RGD:1624291
G Snai1 snail family transcriptional repressor 1 JBrowse link 3 164,274,710 164,279,199 RGD:1624291
perichromatin fibrils term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clock clock circadian regulator JBrowse link 14 34,418,226 34,502,218 RGD:10401943
G Cpsf6 cleavage and polyadenylation specific factor 6 JBrowse link 7 60,385,688 60,417,661 RGD:1624291
G Dhx9 DExH-box helicase 9 JBrowse link 13 70,885,503 70,922,278 RGD:1624291
G Nufip1 nuclear FMR1 interacting protein 1 JBrowse link 15 58,171,163 58,201,888 RGD:1624291
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:1624291
G Tardbp TAR DNA binding protein JBrowse link 5 165,432,089 165,442,232 RGD:5687141
G Trim24 tripartite motif-containing 24 JBrowse link 4 65,632,278 65,684,746 RGD:1624291
rDNA heterochromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Baz2a bromodomain adjacent to zinc finger domain, 2A JBrowse link 7 2,518,267 2,548,840 RGD:1624291
G Nop53 NOP53 ribosome biogenesis factor JBrowse link 1 77,836,522 77,843,991 RGD:1624291
G Rrp8 ribosomal RNA processing 8 JBrowse link 1 170,574,670 170,578,693 RGD:1624291
RGD:13792537
RGD:1600115
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:1624291
RGD:13792537
G Suv39h1 suppressor of variegation 3-9 homolog 1 JBrowse link X 146,532,002 146,533,538 RGD:1624291
G Suv39h1l1 suppressor of variegation 3-9 homolog 1 (Drosophila)-like 1 JBrowse link X 15,171,280 15,185,191 RGD:1600115
RSC-type complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G En1 engrailed homeobox 1 JBrowse link 13 36,532,758 36,537,888 RGD:13792537
G En2 engrailed homeobox 2 JBrowse link 4 438,668 444,508 RGD:13792537
G Pbrm1 polybromo 1 JBrowse link 16 7,103,714 7,202,899 RGD:13792537
G Suz12 SUZ12 polycomb repressive complex 2 subunit JBrowse link 10 67,325,101 67,371,588 RGD:13792537
RSF complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rsf1 remodeling and spacing factor 1 JBrowse link 1 162,549,222 162,671,962 RGD:1624291
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 19 30,936,703 30,969,454 RGD:1624291
senescence-associated heterochromatin focus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbx3 chromobox 3 JBrowse link 4 81,243,809 81,257,898 RGD:5507827
G Cdkn2a cyclin-dependent kinase inhibitor 2A JBrowse link 5 107,823,323 107,832,405 RGD:1624291
G Hmga1 high mobility group AT-hook 1 JBrowse link 20 7,132,501 7,140,155 RGD:1624291
RGD:1600115
G Hmga2 high mobility group AT-hook 2 JBrowse link 7 65,159,944 65,275,408 RGD:1624291
RGD:1600115
sex chromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eed embryonic ectoderm development JBrowse link 1 154,189,252 154,216,340 RGD:1624291
G Pcgf2 polycomb group ring finger 2 JBrowse link 10 85,631,829 85,642,591 RGD:1624291
G Phc1 polyhomeotic homolog 1 JBrowse link 4 155,093,947 155,118,838 RGD:1624291
G Ring1 ring finger protein 1 JBrowse link 20 3,812,287 3,815,834 RGD:1624291
G Rnf2 ring finger protein 2 JBrowse link 13 68,829,714 68,859,920 RGD:1624291
RGD:1600115
G Suz12 SUZ12 polycomb repressive complex 2 subunit JBrowse link 10 67,325,101 67,371,588 RGD:1624291
RGD:1600115
Sin3 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07024825.1 RGD:13792537
G Csnk2a1 casein kinase 2 alpha 1 JBrowse link 3 147,713,808 147,760,375 RGD:1624291
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:1624291
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:1624291
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 JBrowse link 1 29,191,170 29,201,257 RGD:1624291
G Ing2 inhibitor of growth family, member 2 JBrowse link 16 47,714,756 47,725,836 RGD:1624291
G Morf4l1 mortality factor 4 like 1 JBrowse link 8 97,473,454 97,494,974 RGD:1624291
RGD:1600115
G Ncor1 nuclear receptor co-repressor 1 JBrowse link 10 48,629,121 48,772,890 RGD:1624291
RGD:13792537
RGD:1600115
G Phf12 PHD finger protein 12 JBrowse link 10 64,815,462 64,863,514 RGD:1624291
G Sin3a SIN3 transcription regulator family member A JBrowse link 8 61,748,590 61,803,314 RGD:1624291
RGD:13792537
G Sin3b SIN3 transcription regulator family member B JBrowse link 16 18,842,456 18,860,086 RGD:13792537
G Sinhcaf SIN3-HDAC complex associated factor JBrowse link 4 183,401,314 183,426,439 RGD:1624291
RGD:13792537
G Suds3 SDS3 homolog, SIN3A corepressor complex component JBrowse link 12 45,199,012 45,221,507 RGD:1624291
Sin3-type complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brms1 BRMS1, transcriptional repressor and anoikis regulator JBrowse link 1 220,325,352 220,334,616 RGD:13792537
G Brms1l BRMS1 like transcriptional repressor JBrowse link 6
6		 76,675,399
76,743,243		 76,708,261
76,753,950		 RGD:13792537
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:13792537
G Hdac1l histone deacetylase 1-like JBrowse link 9 84,893,145 84,894,599 RGD:13792537
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:13792537
G LOC108348098 breast cancer metastasis-suppressor 1 homolog JBrowse link 1 220,418,455 220,427,785 RGD:13792537
G Phf12 PHD finger protein 12 JBrowse link 10 64,815,462 64,863,514 RGD:13792537
G Sap130 Sin3A associated protein 130 JBrowse link 18 24,397,523 24,497,831 RGD:13792537
G Suds3 SDS3 homolog, SIN3A corepressor complex component JBrowse link 12 45,199,012 45,221,507 RGD:13792537
SWI/SNF complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actl6a actin-like 6A JBrowse link 2 119,112,776 119,128,870 RGD:1624291
RGD:13792537
G Actl6b actin-like 6B JBrowse link 12 22,194,595 22,211,107 RGD:1624291
RGD:13792537
G Arid1a AT-rich interaction domain 1A JBrowse link 5 151,904,687 151,977,973 RGD:1624291
RGD:13792537
G Arid1b AT-rich interaction domain 1B JBrowse link 1 45,923,119 46,232,301 RGD:1624291
RGD:13792537
G Bicra BRD4 interacting chromatin remodeling complex associated protein JBrowse link 1 77,869,020 77,943,828 RGD:1624291
RGD:13792537
G Bicral BRD4 interacting chromatin remodeling complex associated protein like JBrowse link 9 16,406,577 16,495,751 RGD:1624291
RGD:13792537
G Brd9 bromodomain containing 9 JBrowse link 1 31,939,612 31,968,120 RGD:1624291
G LOC103694314 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like JBrowse link 19 29,798,912 29,803,955 RGD:13792537
G LOC103694876 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 RGD:13792537
G Mpnd MPN domain containing JBrowse link 9 11,055,370 11,061,611 RGD:13792537
G Mysm1 myb-like, SWIRM and MPN domains 1 JBrowse link 5 113,902,115 113,939,083 RGD:13792537
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 JBrowse link 1 244,615,811 244,783,736 RGD:1624291
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:634124
RGD:1624291
RGD:1600115
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 20 13,679,955 13,702,821 RGD:1624291
RGD:13792537
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 JBrowse link 8 118,206,678 118,326,264 RGD:1624291
RGD:13792537
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 JBrowse link 7 2,875,898 2,905,463 RGD:1624291
RGD:13792537
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 JBrowse link 7 141,355,623 141,366,725 RGD:1624291
G Smarcd2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 JBrowse link 10 94,451,866 94,460,732 RGD:1624291
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 JBrowse link 4 7,076,710 7,108,334 RGD:1624291
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 JBrowse link 10 87,116,827 87,138,890 RGD:1624291
RGD:13792537
RGD:1600115
G Ss18 SS18 subunit of BAF chromatin remodeling complex JBrowse link 18 6,020,267 6,083,055 RGD:1624291
SWI/SNF superfamily-type complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actl6a actin-like 6A JBrowse link 2 119,112,776 119,128,870 RGD:1624291
G Actl6b actin-like 6B JBrowse link 12 22,194,595 22,211,107 RGD:1624291
G Arid1a AT-rich interaction domain 1A JBrowse link 5 151,904,687 151,977,973 RGD:1624291
G Arid1b AT-rich interaction domain 1B JBrowse link 1 45,923,119 46,232,301 RGD:1624291
G Arid2 AT-rich interaction domain 2 JBrowse link 7 137,680,564 137,798,329 RGD:1624291
G Brd7 bromodomain containing 7 JBrowse link 19 19,672,780 19,701,484 RGD:1624291
G Dpf2 double PHD fingers 2 JBrowse link 1 221,253,764 221,269,043 RGD:1624291
G Pbrm1 polybromo 1 JBrowse link 16 7,103,714 7,202,899 RGD:1624291
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 JBrowse link 1 244,615,811 244,783,736 RGD:1624291
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:1624291
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 20 13,679,955 13,702,821 RGD:1624291
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 JBrowse link 8 118,206,678 118,326,264 RGD:1624291
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 JBrowse link 7 2,875,898 2,905,463 RGD:1624291
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 JBrowse link 7 141,355,623 141,366,725 RGD:1624291
G Smarcd2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 JBrowse link 10 94,451,866 94,460,732 RGD:1624291
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 JBrowse link 4 7,076,710 7,108,334 RGD:1624291
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 JBrowse link 10 87,116,827 87,138,890 RGD:1624291
Swi5-Sfr1 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07067300.1 RGD:13792537
G Sfr1 SWI5-dependent homologous recombination repair protein 1 JBrowse link 1 267,505,336 267,509,350 RGD:1600115
RGD:13792537
RGD:1624291
G Swi5 SWI5 homologous recombination repair protein JBrowse link 3 11,307,981 11,317,049 RGD:1624291
RGD:13792537
RGD:1600115
Swr1 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actr6 actin related protein 6 JBrowse link 7 30,377,369 30,397,922 RGD:13792537
G Anp32e acidic nuclear phosphoprotein 32 family member E JBrowse link 2 198,040,573 198,057,005 RGD:1624291
RGD:1600115
G Brd8 bromodomain containing 8 JBrowse link 18 27,375,645 27,423,989 RGD:1624291
G Dmap1 DNA methyltransferase 1-associated protein 1 JBrowse link 5 136,533,791 136,541,795 RGD:13792537
G Ep400 E1A binding protein p400 JBrowse link 12 51,948,650 52,055,274 RGD:1624291
G Ing3 inhibitor of growth family, member 3 JBrowse link 4 49,017,235 49,044,450 RGD:1624291
RGD:1600115
G Kat5 lysine acetyltransferase 5 JBrowse link 1 220,967,795 220,974,596 RGD:1600115
RGD:1624291
G RGD1564855 similar to RuvB-like protein 1 JBrowse link X 1,854,580 1,856,333 RGD:13792537
G Ruvbl1 RuvB-like AAA ATPase 1 JBrowse link 4 120,411,917 120,447,458 RGD:1624291
RGD:13792537
RGD:1600115
G Ruvbl2 RuvB-like AAA ATPase 2 JBrowse link 1 101,413,766 101,426,970 RGD:1624291
RGD:13792537
G Srcap Snf2-related CREBBP activator protein JBrowse link 1 198,957,764 199,007,576 RGD:13792537
G Trrap transformation/transcription domain-associated protein JBrowse link 12 11,537,950 11,627,563 RGD:1624291
G Znhit1 zinc finger, HIT-type containing 1 JBrowse link 12 22,726,643 22,732,917 RGD:13792537
telomeric heterochromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atrx ATRX, chromatin remodeler JBrowse link X 76,820,110 76,979,155 RGD:1600115
RGD:1624291
G Lrwd1 leucine-rich repeats and WD repeat domain containing 1 JBrowse link 12 23,574,234 23,587,262 RGD:1624291
transcriptionally active chromatin term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aff4 AF4/FMR2 family, member 4 JBrowse link 10 38,692,167 38,773,021 RGD:1624291
G Bcas3 BCAS3, microtubule associated cell migration factor JBrowse link 10 72,756,548 73,271,851 RGD:1624291
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 175,839,140 175,869,167 RGD:1624291
G Ell elongation factor for RNA polymerase II JBrowse link 16 20,594,129 20,641,441 RGD:1624291
G Esr1 estrogen receptor 1 JBrowse link 1 41,192,029 41,594,799 RGD:1600115
RGD:1624291
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:1624291
G Exosc4 exosome component 4 JBrowse link 7 117,390,302 117,393,044 RGD:1624291
G Exosc5 exosome component 5 JBrowse link 1 82,452,104 82,461,607 RGD:1624291
G H1f2 H1.2 linker histone, cluster member JBrowse link 17 43,638,938 43,640,445 RGD:1624291
G H2afb3 H2A histone family, member B3 JBrowse link X 88,602,135 88,602,485 RGD:1624291
G Ice1 interactor of little elongation complex ELL subunit 1 JBrowse link 1 35,280,481 35,322,769 RGD:1624291
G Ice2 interactor of little elongation complex ELL subunit 2 JBrowse link 8 75,625,147 75,666,959 RGD:1624291
G Kmt2e lysine methyltransferase 2E JBrowse link 4 8,187,751 8,255,578 RGD:1624291
G Padi2 peptidyl arginine deiminase 2 JBrowse link 5 159,428,479 159,471,113 RGD:1600115
RGD:1624291
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 85,362,421 85,367,999 RGD:13792537
G Pcid2 PCI domain containing 2 JBrowse link 16 81,757,582 81,783,047 RGD:13792537
G Pelp1 proline, glutamate and leucine rich protein 1 JBrowse link 10 56,988,076 57,005,111 RGD:1624291
RGD:1600115
G Psip1 PC4 and SFRS1 interacting protein 1 JBrowse link 5 101,555,691 101,588,659 RGD:8554215
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link 10 65,470,470 65,507,581 RGD:13792537
G Ttc37 tetratricopeptide repeat domain 37 JBrowse link 2 2,891,265 3,037,602 RGD:1624291
G Wdr61 WD repeat domain 61 JBrowse link 8 59,296,339 59,313,663 RGD:1624291
RGD:1600115
G Zc3h8 zinc finger CCCH type containing 8 JBrowse link 3 121,471,836 121,488,528 RGD:1624291
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19738
    cellular anatomical entity 19354
      chromatin 654
        CENP-A containing chromatin + 0
        cytoplasmic chromatin + 1
        euchromatin + 49
        heterochromatin + 99
        nuclear chromatin + 441
        nucleosome + 106
        transcriptionally active chromatin 23
        transcriptionally silent chromatin 0
Path 2
Term Annotations click to browse term
  cellular_component 19738
    cellular anatomical entity 19354
      organelle 12457
        non-membrane-bounded organelle 4588
          intracellular non-membrane-bounded organelle 4569
            chromosome 1095
              chromatin 654
                CENP-A containing chromatin + 0
                cytoplasmic chromatin + 1
                euchromatin + 49
                heterochromatin + 99
                nuclear chromatin + 441
                nucleosome + 106
                transcriptionally active chromatin 23
                transcriptionally silent chromatin 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.