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ONTOLOGY REPORT - ANNOTATIONS

Term:intraciliary retrograde transport
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Accession:GO:0035721 term browser browse the term
Definition:The directed movement of large protein complexes along microtubules from the tip of a cilium (also called flagellum) toward the cell body, mediated by motor proteins.
Comment:Note that we deem cilium and microtubule-based flagellum to be equivalent.
Synonyms:exact_synonym: intraflagellar retrograde transport


show annotations for term's descendants           Sort by:
intraciliary retrograde transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO (PMID:22922713) MGI PMID:22922713 NCBI chr19:4,936,906...4,956,681
Ensembl chr19:4,936,906...4,956,656 		JBrowse link
G BC048507 cDNA sequence BC048507 involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:68,011,445...68,012,042
Ensembl chr13:68,011,445...68,012,044 		JBrowse link
G Cilk1 ciliogenesis associated kinase 1 involved_in IMP (PMID:25243405) UniProt PMID:25243405 NCBI chr 9:78,016,425...78,079,396
Ensembl chr 9:78,016,474...78,079,389 		JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:18488998) MGI
GO_Central		 PMID:18488998 GO_REF:0000033 NCBI chr 9:6,928,550...7,177,619
Ensembl chr 9:6,928,503...7,184,446 		JBrowse link
G Dync2i1 dynein 2 intermediate chain 1 involved_in ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr12:116,169,881...116,226,665
Ensembl chr12:116,169,882...116,226,642 		JBrowse link
G Dync2i2 dynein 2 intermediate chain 2 involved_in IMP
ISO		 (PMID:28379358) UniProt
GO_Central		 PMID:28379358 GO_REF:0000119 NCBI chr 2:29,921,563...29,938,891
Ensembl chr 2:29,921,558...29,938,893 		JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 involved_in IBA
IEA		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr17:84,933,903...84,962,996
Ensembl chr17:84,933,924...84,963,016 		JBrowse link
G Dynll1 dynein light chain LC8-type 1 involved_in
acts_upstream_of_or_within		 IBA
IMP		 (PMID:25294941) GO_Central
MGI		 PMID:25294941 GO_REF:0000033 NCBI chr 5:115,435,129...115,438,995
Ensembl chr 5:115,435,169...115,439,058 		JBrowse link
G Dynlt2b dynein light chain Tctex-type 2B involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr16:32,238,520...32,247,917
Ensembl chr16:32,238,520...32,247,917 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in IMP
NAS
IBA		 (PMID:21209331)
(PMID:27806291)		 UniProt
ComplexPortal
GO_Central		 PMID:21209331 PMID:27806291 GO_REF:0000033 NCBI chr 6:115,830,340...115,903,660
Ensembl chr 6:115,830,431...115,903,660 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within
involved_in		 IMP
IC
NAS
ISO
IBA		 (PMID:24009529)
(PMID:20889716)
(PMID:27806291)		 MGI
ComplexPortal
GO_Central		 PMID:20889716 PMID:24009529 PMID:27806291 GO_REF:0000033 GO_REF:0000119 NCBI chr17:25,235,056...25,318,461
Ensembl chr17:25,235,059...25,318,469 		JBrowse link
G Ift43 intraflagellar transport 43 involved_in
acts_upstream_of_or_within		 IBA
IC
NAS
ISS
ISO		 (PMID:20889716)
(PMID:27806291)		 GO_Central
MGI
ComplexPortal
UniProt		 PMID:20889716 PMID:27806291 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr12:86,129,335...86,209,233
Ensembl chr12:86,129,315...86,209,233 		JBrowse link
G Ttc21a tetratricopeptide repeat domain 21A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:119,766,656...119,798,496
Ensembl chr 9:119,766,672...119,796,859 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within
involved_in		 IMP
ISO
IBA
NAS		 (PMID:27482817)
(PMID:18327258)
(PMID:19732765)
(PMID:27806291)		 MGI
GO_Central
ComplexPortal		 PMID:18327258 PMID:19732765 PMID:27482817 PMID:27806291 GO_REF:0000008 GO_REF:0000033 NCBI chr 2:66,014,131...66,087,144
Ensembl chr 2:66,014,671...66,086,961 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within
involved_in		 ISO
NAS
IBA		 (PMID:22922713)
(PMID:27806291)		 MGI
ComplexPortal
GO_Central		 PMID:22922713 PMID:27806291 GO_REF:0000033 NCBI chr 5:65,357,039...65,417,758
Ensembl chr 5:65,357,039...65,417,758 		JBrowse link
G Wdr35 WD repeat domain 35 involved_in
acts_upstream_of_or_within		 IBA
ISO
NAS		 (PMID:27806291) GO_Central
MGI
ComplexPortal		 PMID:27806291 GO_REF:0000008 GO_REF:0000033 NCBI chr12:9,023,897...9,078,848
Ensembl chr12:9,023,892...9,078,847 		JBrowse link
regulation of intraciliary retrograde transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dynlt2b dynein light chain Tctex-type 2B involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr16:32,238,520...32,247,917
Ensembl chr16:32,238,520...32,247,917 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B involved_in ISO
ISS		 GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000119 NCBI chr 2:66,014,131...66,087,144
Ensembl chr 2:66,014,671...66,086,961 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28628
    localization 5647
      protein-containing complex localization 287
        intraciliary transport 55
          intraciliary retrograde transport 16
            negative regulation of intraciliary retrograde transport 0
            positive regulation of intraciliary retrograde transport 0
            regulation of intraciliary retrograde transport + 2
Path 2
Term Annotations click to browse term
  biological_process 28628
    cellular process 18389
      cellular localization 3729
        establishment of localization in cell 2167
          intracellular transport 1398
            cytoskeleton-dependent intracellular transport 214
              transport along microtubule 194
                intraciliary transport 55
                  intraciliary retrograde transport 16
                    negative regulation of intraciliary retrograde transport 0
                    positive regulation of intraciliary retrograde transport 0
                    regulation of intraciliary retrograde transport + 2
paths to the root