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ONTOLOGY REPORT - ANNOTATIONS


Term:intraciliary retrograde transport
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Accession:GO:0035721 term browser browse the term
Definition:The directed movement of large protein complexes along microtubules from the tip of a cilium (also called flagellum) toward the cell body, mediated by motor proteins.
Comment:Note that we deem cilium and microtubule-based flagellum to be equivalent.
Synonyms:exact_synonym: intraflagellar retrograde transport



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intraciliary retrograde transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO (MGI:5469957|PMID:22922713) MGI PMID:22922713 MGI:5469957 NCBI chr19:4,936,906...4,956,681
Ensembl chr19:4,936,906...4,956,656
JBrowse link
G BC048507 cDNA sequence BC048507 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:68,011,445...68,012,042
Ensembl chr13:68,011,445...68,012,044
JBrowse link
G Cilk1 ciliogenesis associated kinase 1 involved_in IMP (MGI:5787768|PMID:25243405) UniProt PMID:25243405 MGI:5787768 NCBI chr 9:78,016,425...78,079,396
Ensembl chr 9:78,016,474...78,079,389
JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:3804352|PMID:18488998)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:18488998 PMID:21873635 MGI:3804352 MGI:6201960 NCBI chr 9:6,928,550...7,177,619
Ensembl chr 9:6,928,503...7,184,446
JBrowse link
G Dync2i1 dynein 2 intermediate chain 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr12:116,169,881...116,226,665
Ensembl chr12:116,169,882...116,226,642
JBrowse link
G Dync2i2 dynein 2 intermediate chain 2 involved_in IMP
ISO
(MGI:5906938|PMID:28379358) UniProt
MGI
PMID:28379358 GO_REF:0000119 MGI:4834177 MGI:5906938 NCBI chr 2:29,921,563...29,938,891
Ensembl chr 2:29,921,558...29,938,893
JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr17:84,933,903...84,962,996
Ensembl chr17:84,933,924...84,963,016
JBrowse link
G Dynll1 dynein light chain LC8-type 1 acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:5615046|PMID:25294941)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:25294941 MGI:5615046 MGI:6201960 NCBI chr 5:115,435,129...115,438,995
Ensembl chr 5:115,435,169...115,439,058
JBrowse link
G Dynlt2b dynein light chain Tctex-type 2B involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr16:32,238,520...32,247,917
Ensembl chr16:32,238,520...32,247,917
JBrowse link
G Ift122 intraflagellar transport 122 involved_in IMP
NAS
IBA
(MGI:4888042|PMID:21209331)
(MGI:6867285|PMID:27806291)
(MGI:6201960|PMID:21873635)
UniProt
ComplexPortal
GO_Central
PMID:21209331 PMID:21873635 PMID:27806291 MGI:4888042 MGI:6201960 MGI:6867285 NCBI chr 6:115,830,340...115,903,660
Ensembl chr 6:115,830,431...115,903,660
JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within
involved_in
IC
IMP
NAS
ISO
IBA
(MGI:4834920|PMID:20889716)
(MGI:5635784|PMID:24009529)
(MGI:6867285|PMID:27806291)
(MGI:6201960|PMID:21873635)
MGI
ComplexPortal
GO_Central
PMID:20889716 PMID:21873635 PMID:24009529 PMID:27806291 GO_REF:0000119 MGI:4834177 MGI:4834920 MGI:5635784 MGI:6201960 MGI:6867285 NCBI chr17:25,235,056...25,318,461
Ensembl chr17:25,235,059...25,318,469
JBrowse link
G Ift43 intraflagellar transport 43 acts_upstream_of_or_within
involved_in
IC
NAS
ISO
IBA
(MGI:4834920|PMID:20889716)
(MGI:6867285|PMID:27806291)
(MGI:6201960|PMID:21873635)
MGI
ComplexPortal
GO_Central
PMID:20889716 PMID:21873635 PMID:27806291 GO_REF:0000119 MGI:4834177 MGI:4834920 MGI:6201960 MGI:6867285 NCBI chr12:86,129,335...86,209,233
Ensembl chr12:86,129,315...86,209,233
JBrowse link
G Ttc21a tetratricopeptide repeat domain 21A involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:119,766,656...119,798,496
Ensembl chr 9:119,766,672...119,796,859
JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within
involved_in
ISO
IBA
IMP
NAS
(MGI:6201960|PMID:21873635)
(MGI:3784018|PMID:18327258)
(MGI:4367927|PMID:19732765)
(MGI:5789453|PMID:27482817)
(MGI:6867285|PMID:27806291)
MGI
GO_Central
ComplexPortal
PMID:18327258 PMID:19732765 PMID:21873635 PMID:27482817 PMID:27806291 GO_REF:0000008 MGI:2154458 MGI:3784018 MGI:4367927 MGI:5789453 MGI:6201960 MGI:6867285 NCBI chr 2:66,014,131...66,087,144
Ensembl chr 2:66,014,671...66,086,961
JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within
involved_in
ISO
NAS
IBA
(MGI:5469957|PMID:22922713)
(MGI:6867285|PMID:27806291)
(MGI:6201960|PMID:21873635)
MGI
ComplexPortal
GO_Central
PMID:21873635 PMID:22922713 PMID:27806291 MGI:5469957 MGI:6201960 MGI:6867285 NCBI chr 5:65,357,039...65,417,758
Ensembl chr 5:65,357,039...65,417,758
JBrowse link
G Wdr35 WD repeat domain 35 acts_upstream_of_or_within
involved_in
ISO
NAS
IBA
(MGI:6867285|PMID:27806291)
(MGI:6201960|PMID:21873635)
MGI
ComplexPortal
GO_Central
PMID:21873635 PMID:27806291 GO_REF:0000008 MGI:2154458 MGI:6201960 MGI:6867285 NCBI chr12:9,023,897...9,078,848
Ensembl chr12:9,023,892...9,078,847
JBrowse link
regulation of intraciliary retrograde transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dynlt2b dynein light chain Tctex-type 2B involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr16:32,238,520...32,247,917
Ensembl chr16:32,238,520...32,247,917
JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:66,014,131...66,087,144
Ensembl chr 2:66,014,671...66,086,961
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28558
    localization 5517
      protein-containing complex localization 252
        intraciliary transport 54
          intraciliary retrograde transport 16
            negative regulation of intraciliary retrograde transport 0
            positive regulation of intraciliary retrograde transport 0
            regulation of intraciliary retrograde transport + 2
Path 2
Term Annotations click to browse term
  biological_process 28558
    cellular process 17563
      cellular localization 3670
        establishment of localization in cell 2113
          intracellular transport 1371
            cytoskeleton-dependent intracellular transport 205
              transport along microtubule 182
                intraciliary transport 54
                  intraciliary retrograde transport 16
                    negative regulation of intraciliary retrograde transport 0
                    positive regulation of intraciliary retrograde transport 0
                    regulation of intraciliary retrograde transport + 2
paths to the root