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stress granule assembly - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:stress granule assembly
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Accession:GO:0034063 term browser browse the term
Definition:The aggregation, arrangement and bonding together of proteins and RNA molecules to form a stress granule.
Synonyms:exact_synonym: SG assembly

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stress granule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ang angiogenin involved_in ISO (PMID:20129916), (PMID:23047679) UniProt PMID:20129916 PMID:23047679 NCBI chrNW_004936880:39,372...40,070 JBrowse link
G Atxn2 ataxin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936558:4,127,477...4,188,307
Ensembl chrNW_004936558:4,127,477...4,232,393 		JBrowse link
G Atxn2l ataxin 2 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936501:11,865,796...11,875,215
Ensembl chrNW_004936501:11,865,778...11,874,978 		JBrowse link
G Bicd1 BICD cargo adaptor 1 involved_in ISO (PMID:19825938) BHF-UCL PMID:19825938 NCBI chrNW_004936607:3,893,350...4,126,813
Ensembl chrNW_004936607:3,895,634...4,126,880 		JBrowse link
G C9orf72 C9orf72-SMCR8 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936611:2,074,655...2,101,846
Ensembl chrNW_004936611:2,078,716...2,101,881 		JBrowse link
G Cirbp cold inducible RNA binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:636,041...639,564
Ensembl chrNW_004936588:636,026...640,409 		JBrowse link
G Csde1 cold shock domain containing E1 involved_in ISO (PMID:29395067) UniProt PMID:29395067 NCBI chrNW_004936627:85,894...122,592 JBrowse link
G Dazap2 DAZ associated protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:8,838,469...8,842,904
Ensembl chrNW_004936512:8,838,469...8,842,951 		JBrowse link
G Ddx3x DEAD-box helicase 3 X-linked involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936502:7,770,896...7,820,555
Ensembl chrNW_004936502:7,804,824...7,820,569 		JBrowse link
G Dync1h1 dynein cytoplasmic 1 heavy chain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936835:225,879...290,160
Ensembl chrNW_004936835:225,324...289,954 		JBrowse link
G Eif2s1 eukaryotic translation initiation factor 2 subunit alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936495:10,746,687...10,769,304
Ensembl chrNW_004936495:10,745,923...10,773,199 		JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936513:1,290,038...1,327,850
Ensembl chrNW_004936513:1,289,558...1,327,856 		JBrowse link
G G3bp1 G3BP stress granule assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936515:10,916,442...10,949,080
Ensembl chrNW_004936515:10,916,442...10,949,085 		JBrowse link
G G3bp2 G3BP stress granule assembly factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936598:246,745...326,900
Ensembl chrNW_004936598:296,193...326,900 		JBrowse link
G Grb7 growth factor receptor bound protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:14,912,010...14,925,380
Ensembl chrNW_004936490:14,917,372...14,925,337 		JBrowse link
G Lsm14a LSM14A mRNA processing body assembly factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936570:1,723,966...1,791,784
Ensembl chrNW_004936570:1,729,841...1,791,778 		JBrowse link
G Ogfod1 2-oxoglutarate and iron dependent oxygenase domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:8,759,348...8,780,816
Ensembl chrNW_004936475:8,759,348...8,780,841 		JBrowse link
G Prrc2c proline rich coiled-coil 2C involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:15,577,323...15,657,349
Ensembl chrNW_004936481:15,577,312...15,657,404 		JBrowse link
G Pum2 pumilio RNA binding family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16775137) Ensembl
MGI		 PMID:16775137 GO_REF:0000107 NCBI chrNW_004936493:11,067,318...11,154,133
Ensembl chrNW_004936493:11,067,202...11,155,377 		JBrowse link
G Rps23 ribosomal protein S23 involved_in ISO (PMID:28257692) UniProt PMID:28257692 NCBI chrNW_004936469:1,523,667...1,525,830 JBrowse link
G Tia1 TIA1 cytotoxic granule associated RNA binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936491:14,381,107...14,411,931
Ensembl chrNW_004936491:14,380,195...14,411,868 		JBrowse link
G Ubap2l ubiquitin associated protein 2 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:3,913,460...3,960,026
Ensembl chrNW_004936580:3,914,468...3,959,789 		JBrowse link
G Ythdf1 YTH N6-methyladenosine RNA binding protein F1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:10,587,877...10,603,373
Ensembl chrNW_004936514:10,587,222...10,603,478 		JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein F2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:12,791,121...12,827,122
Ensembl chrNW_004936474:12,791,073...12,827,122 		JBrowse link
G Ythdf3 YTH N6-methyladenosine RNA binding protein F3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:10,323,338...10,362,150
Ensembl chrNW_004936496:10,323,296...10,362,163 		JBrowse link
negative regulation of stress granule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Styxl1 serine/threonine/tyrosine interacting like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936543:2,208,669...2,269,264 JBrowse link
G Usp10 ubiquitin specific peptidase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:3,308,121...3,350,476
Ensembl chrNW_004936641:3,307,931...3,350,517 		JBrowse link
positive regulation of stress granule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 ISO RGD PMID:30404558 RGD:401900732 NCBI chrNW_004936564:2,759,085...2,885,394
Ensembl chrNW_004936564:2,758,598...2,885,420 		JBrowse link
G Becn1 beclin 1 ISO RGD PMID:30404558 RGD:401900732 NCBI chrNW_004936490:17,518,100...17,531,126
Ensembl chrNW_004936490:17,517,751...17,531,151 		JBrowse link
G Caprin1 cell cycle associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936533:3,913,375...3,953,551
Ensembl chrNW_004936533:3,913,375...3,952,851 		JBrowse link
G G3bp1 G3BP stress granule assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936515:10,916,442...10,949,080
Ensembl chrNW_004936515:10,916,442...10,949,085 		JBrowse link
G G3bp2 G3BP stress granule assembly factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936598:246,745...326,900
Ensembl chrNW_004936598:296,193...326,900 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO RGD PMID:30404558 RGD:401900732 NCBI chrNW_004936495:5,770,988...5,816,157
Ensembl chrNW_004936495:5,770,669...5,816,157 		JBrowse link
G Hsf1 heat shock transcription factor 1 ISO RGD PMID:30404558 RGD:401900732 NCBI chrNW_004936470:7,927,734...7,950,805
Ensembl chrNW_004936470:7,928,095...7,933,337 		JBrowse link
G Ubap2l ubiquitin associated protein 2 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:3,913,460...3,960,026
Ensembl chrNW_004936580:3,914,468...3,959,789 		JBrowse link
regulation of stress granule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:1,817,051...1,843,376
Ensembl chrNW_004936518:1,804,969...1,843,380 		JBrowse link
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936522:4,872,360...4,939,873
Ensembl chrNW_004936522:4,875,046...4,939,879 		JBrowse link
Term paths to the root
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Term Annotations click to browse term
  biological_process 17429
    cellular process 17029
      cellular component organization or biogenesis 7544
        cellular component organization 7349
          organelle organization 3413
            organelle assembly 1034
              membraneless organelle assembly 430
                stress granule assembly 34
                  negative regulation of stress granule assembly 2
                  positive regulation of stress granule assembly 8
                  regulation of stress granule assembly + 12
paths to the root