Bicd1 (BICD cargo adaptor 1) - Rat Genome Database

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Gene: Bicd1 (BICD cargo adaptor 1) Ictidomys tridecemlineatus
Analyze
Symbol: Bicd1
Name: BICD cargo adaptor 1
RGD ID: 12506210
Description: ENCODES a protein that exhibits proteinase activated receptor binding (ortholog); INVOLVED IN negative regulation of phospholipase C-activating G protein-coupled receptor signaling pathway (ortholog); stress granule assembly (ortholog); FOUND IN centrosome (inferred); cytoplasmic microtubule (inferred); cytoplasmic vesicle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BICD cargo adaptor 1, transcript variant X1; BICD cargo adaptor 1, transcript variant X2; BICD cargo adaptor 1, transcript variant X3; BICD cargo adaptor 1, transcript variant X4; BICD cargo adaptor 1, transcript variant X5; BICD cargo adaptor 1, transcript variant X6; BICD cargo adaptor 1, transcript variant X7; BICD cargo adaptor 1, transcript variant X8; BICD cargo adaptor 1, transcript variant X9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494577,059,403 - 77,293,473 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366073,895,634 - 4,126,880 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366073,893,350 - 4,126,813 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Bicd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494577,059,403 - 77,293,473 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366073,895,634 - 4,126,880 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366073,893,350 - 4,126,813 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BICD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381232,106,847 - 32,383,633 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1232,106,835 - 32,383,633 (+)EnsemblGRCh38hg38GRCh38
GRCh371232,259,781 - 32,536,567 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361232,151,452 - 32,422,408 (+)NCBINCBI36Build 36hg18NCBI36
Build 341232,151,451 - 32,422,408NCBI
Celera1212,081,147 - 12,351,535 (+)NCBICelera
Cytogenetic Map12p11.21NCBI
HuRef1232,011,771 - 32,283,413 (+)NCBIHuRef
CHM1_11232,226,441 - 32,497,738 (+)NCBICHM1_1
T2T-CHM13v2.01231,983,002 - 32,259,851 (+)NCBIT2T-CHM13v2.0
Bicd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396149,310,322 - 149,464,827 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6149,310,384 - 149,464,827 (+)EnsemblGRCm39 Ensembl
GRCm386149,408,824 - 149,563,329 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6149,408,886 - 149,563,329 (+)EnsemblGRCm38mm10GRCm38
MGSCv376149,357,408 - 149,507,379 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366149,366,236 - 149,514,781 (+)NCBIMGSCv36mm8
Celera6152,443,346 - 152,592,893 (+)NCBICelera
Cytogenetic Map6G3NCBI
cM Map678.94NCBI
Bicd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84184,208,891 - 184,362,840 (+)NCBIGRCr8
mRatBN7.24182,479,071 - 182,631,504 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4182,479,071 - 182,627,434 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4188,774,051 - 188,923,365 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04184,558,582 - 184,707,889 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04183,179,094 - 183,328,421 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04184,018,845 - 184,167,628 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4184,019,087 - 184,165,540 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04248,136,721 - 248,287,045 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44186,922,060 - 187,069,288 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14187,167,607 - 187,313,324 (+)NCBI
Celera4170,945,624 - 171,092,463 (+)NCBICelera
Cytogenetic Map4q44NCBI
Bicd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555053,336,803 - 3,544,752 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555053,330,933 - 3,544,752 (-)NCBIChiLan1.0ChiLan1.0
BICD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21064,367,894 - 64,648,099 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11264,364,289 - 64,643,823 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01253,838,986 - 54,118,340 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11256,437,516 - 56,713,901 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1256,443,504 - 56,713,377 (-)Ensemblpanpan1.1panPan2
BICD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12716,478,323 - 16,618,429 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2716,484,121 - 16,612,044 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2729,714,601 - 29,945,732 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02716,657,712 - 16,883,302 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2716,661,021 - 16,883,775 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12716,468,859 - 16,694,442 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02716,502,772 - 16,728,044 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02729,869,159 - 30,094,880 (+)NCBIUU_Cfam_GSD_1.0
BICD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl541,897,382 - 42,143,620 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1541,897,611 - 42,143,668 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2545,092,750 - 45,301,141 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BICD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11131,549,002 - 31,813,498 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1131,549,264 - 31,811,272 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660693,097,937 - 3,373,654 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bicd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247783,762,629 - 3,986,606 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247783,756,683 - 3,986,741 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005334045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005334046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005334047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021732227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021732228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021732229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021732230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021732231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021732232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040280822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040280823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040280825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040280826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_040280827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005731875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005731876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000004247   ⟹   ENSSTOP00000003814
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366073,896,943 - 4,126,417 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000035522   ⟹   ENSSTOP00000032380
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366073,895,634 - 4,126,880 (-)Ensembl
RefSeq Acc Id: XM_005334045   ⟹   XP_005334102
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494577,063,906 - 77,293,047 (-)NCBI
SpeTri2.0NW_0049366073,893,350 - 4,126,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005334046   ⟹   XP_005334103
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494577,062,972 - 77,293,146 (-)NCBI
SpeTri2.0NW_0049366073,895,634 - 4,126,810 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005334047   ⟹   XP_005334104
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494577,093,178 - 77,292,964 (-)NCBI
SpeTri2.0NW_0049366073,926,615 - 4,126,810 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732228   ⟹   XP_021587903
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494577,059,403 - 77,292,964 (-)NCBI
SpeTri2.0NW_0049366073,893,350 - 4,126,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732229   ⟹   XP_021587904
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494577,059,403 - 77,292,964 (-)NCBI
SpeTri2.0NW_0049366073,897,551 - 4,126,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732230   ⟹   XP_021587905
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494577,059,403 - 77,292,964 (-)NCBI
SpeTri2.0NW_0049366073,897,551 - 4,126,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732232   ⟹   XP_021587907
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494577,059,403 - 77,292,964 (-)NCBI
SpeTri2.0NW_0049366073,897,553 - 4,126,810 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040280822   ⟹   XP_040136756
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494577,059,403 - 77,293,473 (-)NCBI
RefSeq Acc Id: XM_040280823   ⟹   XP_040136757
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494577,059,403 - 77,292,964 (-)NCBI
RefSeq Acc Id: XM_040280825   ⟹   XP_040136759
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494577,059,403 - 77,292,964 (-)NCBI
RefSeq Acc Id: XM_040280826   ⟹   XP_040136760
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494577,059,403 - 77,292,964 (-)NCBI
RefSeq Acc Id: XM_040280827   ⟹   XP_040136761
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494577,079,076 - 77,292,964 (-)NCBI
RefSeq Acc Id: XR_005731875
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494577,069,647 - 77,292,964 (-)NCBI
RefSeq Acc Id: XR_005731876
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494577,069,647 - 77,292,964 (-)NCBI
RefSeq Acc Id: XP_005334103   ⟸   XM_005334046
- Peptide Label: isoform X9
- UniProtKB: A0A287DFS2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005334102   ⟸   XM_005334045
- Peptide Label: isoform X3
- UniProtKB: I3M3W3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005334104   ⟸   XM_005334047
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_021587903   ⟸   XM_021732228
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_021587905   ⟸   XM_021732230
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_021587904   ⟸   XM_021732229
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_021587907   ⟸   XM_021732232
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_040136756   ⟸   XM_040280822
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040136760   ⟸   XM_040280826
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040136759   ⟸   XM_040280825
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040136757   ⟸   XM_040280823
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040136761   ⟸   XM_040280827
- Peptide Label: isoform X10
Ensembl Acc Id: ENSSTOP00000032380   ⟸   ENSSTOT00000035522
Ensembl Acc Id: ENSSTOP00000003814   ⟸   ENSSTOT00000004247


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004236 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004247.3 UniProtKB/TrEMBL
  ENSSTOT00000035522.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.250.2470 UniProtKB/TrEMBL
InterPro BICD UniProtKB/TrEMBL
NCBI Gene Bicd1 ENTREZGENE
PANTHER PROTEIN BICAUDAL D HOMOLOG 1 UniProtKB/TrEMBL
  PTHR31233 UniProtKB/TrEMBL
Pfam BicD UniProtKB/TrEMBL
UniProt A0A287DFS2 ENTREZGENE, UniProtKB/TrEMBL
  I3M3W3 ENTREZGENE, UniProtKB/TrEMBL