BICD1 (BICD cargo adaptor 1) - Rat Genome Database

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Gene: BICD1 (BICD cargo adaptor 1) Homo sapiens
Analyze
Symbol: BICD1
Name: BICD cargo adaptor 1
RGD ID: 1319790
HGNC Page HGNC:1049
Description: Enables several functions, including dynactin binding activity; dynein complex binding activity; and enzyme binding activity. Involved in several processes, including minus-end-directed organelle transport along microtubule; positive regulation of protein localization to centrosome; and positive regulation of receptor-mediated endocytosis. Located in several cellular components, including microtubule cytoskeleton; perinuclear region of cytoplasm; and trans-Golgi network.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: bic-D 1; bicaudal D homolog 1; bicaudal D homolog 1 (Drosophila); BICD; cytoskeleton-like bicaudal D protein homolog 1; protein bicaudal D homolog 1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: BICD1P1  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381232,106,847 - 32,383,633 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1232,106,835 - 32,383,633 (+)EnsemblGRCh38hg38GRCh38
GRCh371232,259,781 - 32,536,567 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361232,151,452 - 32,422,408 (+)NCBINCBI36Build 36hg18NCBI36
Build 341232,151,451 - 32,422,408NCBI
Celera1212,081,147 - 12,351,535 (+)NCBICelera
Cytogenetic Map12p11.21NCBI
HuRef1232,011,771 - 32,283,413 (+)NCBIHuRef
CHM1_11232,226,441 - 32,497,738 (+)NCBICHM1_1
T2T-CHM13v2.01231,983,002 - 32,259,851 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (EXP)
4,4'-sulfonyldiphenol  (EXP)
5-azacytidine  (EXP)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (EXP)
amitrole  (ISO)
antirheumatic drug  (EXP)
aristolochic acid A  (EXP)
arsane  (EXP)
arsenic atom  (EXP)
atrazine  (EXP)
benzo[a]pyrene  (EXP)
beta-lapachone  (EXP)
bisphenol A  (EXP,ISO)
bucladesine  (EXP)
C60 fullerene  (ISO)
cadmium dichloride  (EXP)
carmustine  (EXP)
CGP 52608  (EXP)
cisplatin  (EXP)
crocidolite asbestos  (EXP)
diquat  (ISO)
dorsomorphin  (EXP)
elemental selenium  (EXP)
endosulfan  (ISO)
entinostat  (EXP)
folic acid  (EXP)
formaldehyde  (EXP)
FR900359  (EXP)
genistein  (EXP)
gentamycin  (ISO)
isoprenaline  (ISO)
maneb  (ISO)
medroxyprogesterone acetate  (EXP)
methimazole  (ISO)
methyl methanesulfonate  (EXP)
methylmercury chloride  (EXP)
ozone  (ISO)
paracetamol  (EXP)
paraquat  (ISO)
phenylmercury acetate  (EXP)
progesterone  (EXP)
pyridaben  (ISO)
rac-lactic acid  (EXP)
SB 431542  (EXP)
selenium atom  (EXP)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sodium dodecyl sulfate  (EXP)
sulfadimethoxine  (ISO)
sunitinib  (EXP)
tert-butyl hydroperoxide  (EXP)
trichostatin A  (EXP)
triphenyl phosphate  (EXP)
valproic acid  (EXP,ISO)
vitamin E  (EXP)
vorinostat  (EXP)
zearalenone  (EXP)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8530100   PMID:9367685   PMID:12401177   PMID:12447383   PMID:12477932   PMID:12522145   PMID:12892780   PMID:14702039   PMID:15489334   PMID:16320833   PMID:16344560   PMID:16473624  
PMID:17043677   PMID:17101644   PMID:17139249   PMID:17562788   PMID:17707369   PMID:18487243   PMID:19010793   PMID:19596235   PMID:19825938   PMID:19851299   PMID:20080650   PMID:20089649  
PMID:20164183   PMID:20379614   PMID:20686608   PMID:20709820   PMID:21653829   PMID:21873635   PMID:21988832   PMID:23251661   PMID:25476789   PMID:25792135   PMID:25921289   PMID:25962623  
PMID:26638075   PMID:26822037   PMID:27496426   PMID:27801632   PMID:28215293   PMID:28410362   PMID:28514442   PMID:28611215   PMID:28718761   PMID:29507755   PMID:30021884   PMID:30464225  
PMID:30581152   PMID:30639242   PMID:31541015   PMID:31586073   PMID:31846791   PMID:32079660   PMID:32088084   PMID:32838362   PMID:33961781   PMID:34079125   PMID:34299191   PMID:34432599  
PMID:35271311   PMID:35384245   PMID:35914814   PMID:36215168   PMID:37240244   PMID:38569033  


Genomics

Comparative Map Data
BICD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381232,106,847 - 32,383,633 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1232,106,835 - 32,383,633 (+)EnsemblGRCh38hg38GRCh38
GRCh371232,259,781 - 32,536,567 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361232,151,452 - 32,422,408 (+)NCBINCBI36Build 36hg18NCBI36
Build 341232,151,451 - 32,422,408NCBI
Celera1212,081,147 - 12,351,535 (+)NCBICelera
Cytogenetic Map12p11.21NCBI
HuRef1232,011,771 - 32,283,413 (+)NCBIHuRef
CHM1_11232,226,441 - 32,497,738 (+)NCBICHM1_1
T2T-CHM13v2.01231,983,002 - 32,259,851 (+)NCBIT2T-CHM13v2.0
Bicd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396149,310,322 - 149,464,827 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6149,310,384 - 149,464,827 (+)EnsemblGRCm39 Ensembl
GRCm386149,408,824 - 149,563,329 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6149,408,886 - 149,563,329 (+)EnsemblGRCm38mm10GRCm38
MGSCv376149,357,408 - 149,507,379 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366149,366,236 - 149,514,781 (+)NCBIMGSCv36mm8
Celera6152,443,346 - 152,592,893 (+)NCBICelera
Cytogenetic Map6G3NCBI
cM Map678.94NCBI
Bicd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84184,208,891 - 184,362,840 (+)NCBIGRCr8
mRatBN7.24182,479,071 - 182,631,504 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4182,479,071 - 182,627,434 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4188,774,051 - 188,923,365 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04184,558,582 - 184,707,889 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04183,179,094 - 183,328,421 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04184,018,845 - 184,167,628 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4184,019,087 - 184,165,540 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04248,136,721 - 248,287,045 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44186,922,060 - 187,069,288 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14187,167,607 - 187,313,324 (+)NCBI
Celera4170,945,624 - 171,092,463 (+)NCBICelera
Cytogenetic Map4q44NCBI
Bicd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555053,336,803 - 3,544,752 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555053,330,933 - 3,544,752 (-)NCBIChiLan1.0ChiLan1.0
BICD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21064,367,894 - 64,648,099 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11264,364,289 - 64,643,823 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01253,838,986 - 54,118,340 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11256,437,516 - 56,713,901 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1256,443,504 - 56,713,377 (-)Ensemblpanpan1.1panPan2
BICD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12716,478,323 - 16,618,429 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2716,484,121 - 16,612,044 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2729,714,601 - 29,945,732 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02716,657,712 - 16,883,302 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2716,661,021 - 16,883,775 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12716,468,859 - 16,694,442 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02716,502,772 - 16,728,044 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02729,869,159 - 30,094,880 (+)NCBIUU_Cfam_GSD_1.0
Bicd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494577,059,403 - 77,293,473 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366073,895,634 - 4,126,880 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366073,893,350 - 4,126,813 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BICD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl541,897,382 - 42,143,620 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1541,897,611 - 42,143,668 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2545,092,750 - 45,301,141 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BICD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11131,549,002 - 31,813,498 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1131,549,264 - 31,811,272 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660693,097,937 - 3,373,654 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bicd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247783,762,629 - 3,986,606 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247783,756,683 - 3,986,741 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BICD1
51 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12p12.1-11.21(chr12:21771052-32222232)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052783]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052783]|See cases [RCV000052783] Chr12:21771052..32222232 [GRCh38]
Chr12:21923986..32375166 [GRCh37]
Chr12:21815253..32266433 [NCBI36]
Chr12:12p12.1-11.21		 pathogenic
GRCh38/hg38 12p11.21(chr12:32104351-32622343)x1 copy number loss See cases [RCV000053279] Chr12:32104351..32622343 [GRCh38]
Chr12:32257285..32775277 [GRCh37]
Chr12:32148552..32666544 [NCBI36]
Chr12:12p11.21		 uncertain significance
GRCh38/hg38 12p13.33-11.1(chr12:212976-33926913)x4 copy number gain See cases [RCV000053666] Chr12:212976..33926913 [GRCh38]
Chr12:322142..34079848 [GRCh37]
Chr12:192403..33971115 [NCBI36]
Chr12:12p13.33-11.1		 pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:77187-34380176)x3 copy number gain See cases [RCV000053660] Chr12:77187..34380176 [GRCh38]
Chr12:282465..34533111 [GRCh37]
Chr12:56614..34424378 [NCBI36]
Chr12:12p13.33-11.1		 pathogenic
NM_001003398.1(BICD1):c.427-16871G>T single nucleotide variant Lung cancer [RCV000110952] Chr12:32277123 [GRCh38]
Chr12:32430057 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001003398.1(BICD1):c.426+30248G>A single nucleotide variant Lung cancer [RCV000110951] Chr12:32246707 [GRCh38]
Chr12:32399641 [GRCh37]
Chr12:12p11.21		 uncertain significance
GRCh38/hg38 12p12.1-11.1(chr12:25263833-34064528)x1 copy number loss See cases [RCV000133858] Chr12:25263833..34064528 [GRCh38]
Chr12:25416767..34217463 [GRCh37]
Chr12:25308034..34108730 [NCBI36]
Chr12:12p12.1-11.1		 pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:121255-34603274)x3 copy number gain See cases [RCV000136611] Chr12:121255..34603274 [GRCh38]
Chr12:282465..34756209 [GRCh37]
Chr12:100682..34647476 [NCBI36]
Chr12:12p13.33-11.1		 pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:121271-34603261)x3 copy number gain See cases [RCV000139052] Chr12:121271..34603261 [GRCh38]
Chr12:282465..34756196 [GRCh37]
Chr12:100698..34647463 [NCBI36]
Chr12:12p13.33-11.1		 pathogenic
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33		 pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:54427-34608071)x4 copy number gain See cases [RCV000139787] Chr12:54427..34608071 [GRCh38]
Chr12:282465..34761006 [GRCh37]
Chr12:33854..34652273 [NCBI36]
Chr12:12p13.33-11.1		 pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:64620-34682902)x4 copy number gain See cases [RCV000142149] Chr12:64620..34682902 [GRCh38]
Chr12:173786..34835837 [GRCh37]
Chr12:44047..34727104 [NCBI36]
Chr12:12p13.33-11.1		 pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:148034-34178799)x4 copy number gain See cases [RCV000240164] Chr12:148034..34178799 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic|likely pathogenic
GRCh37/hg19 12p11.21-q13.12(chr12:31886971-50360461)x3 copy number gain See cases [RCV000207454] Chr12:31886971..50360461 [GRCh37]
Chr12:12p11.21-q13.12		 pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:89061-34178799)x3 copy number gain See cases [RCV000240487] Chr12:89061..34178799 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
GRCh37/hg19 12p13.33-q11(chr12:173786-37869301)x3 copy number gain See cases [RCV000449191] Chr12:173786..37869301 [GRCh37]
Chr12:12p13.33-q11		 pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837)x3 copy number gain See cases [RCV000447551] Chr12:173786..34835837 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:189578-34756150) copy number gain See cases [RCV000446017] Chr12:189578..34756150 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
NM_001714.4(BICD1):c.1704G>C (p.Val568=) single nucleotide variant not provided [RCV004708881]|not specified [RCV000454834] Chr12:32328159 [GRCh38]
Chr12:32481093 [GRCh37]
Chr12:12p11.21		 benign
NM_001714.4(BICD1):c.1980C>T (p.Ala660=) single nucleotide variant not provided [RCV004707268]|not specified [RCV000455494] Chr12:32328435 [GRCh38]
Chr12:32481369 [GRCh37]
Chr12:12p11.21		 benign
GRCh37/hg19 12p11.22-11.1(chr12:29579030-34835837)x3 copy number gain See cases [RCV000512134] Chr12:29579030..34835837 [GRCh37]
Chr12:12p11.22-11.1		 likely pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12p11.21(chr12:32291840-32576741)x1 copy number loss See cases [RCV000510154] Chr12:32291840..32576741 [GRCh37]
Chr12:12p11.21		 uncertain significance
GRCh37/hg19 12p11.22-q12(chr12:29123400-40956186)x3 copy number gain See cases [RCV000512027] Chr12:29123400..40956186 [GRCh37]
Chr12:12p11.22-q12		 likely pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:565369-34835837)x3 copy number gain See cases [RCV000511580] Chr12:565369..34835837 [GRCh37]
Chr12:12p13.33-11.1		 likely pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
NC_000012.11:g.26370251_54361538inv inversion not specified [RCV000714265] Chr12:26370251..54361538 [GRCh37]
Chr12:12p12.1-q13.13		 uncertain significance
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837)x3 copy number gain not provided [RCV000683479] Chr12:173786..34835837 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837)x2,3 copy number gain not provided [RCV000683478] Chr12:173786..34835837 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
GRCh37/hg19 12p13.33-q11(chr12:173786-37869107)x3 copy number gain not provided [RCV000683480] Chr12:173786..37869107 [GRCh37]
Chr12:12p13.33-q11		 pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 copy number gain not provided [RCV000750253] Chr12:621220..133779118 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12p11.21(chr12:32318653-32659750)x3 copy number gain not provided [RCV000737840] Chr12:32318653..32659750 [GRCh37]
Chr12:12p11.21		 benign
GRCh37/hg19 12p11.21(chr12:32323813-32335627)x1 copy number loss not provided [RCV000737841] Chr12:32323813..32335627 [GRCh37]
Chr12:12p11.21		 benign
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 copy number gain not provided [RCV000750246] Chr12:191619..133777645 [GRCh37]
Chr12:12p13.33-q24.33		 pathogenic
GRCh37/hg19 12p11.21(chr12:32324955-32335627)x1 copy number loss not provided [RCV000750358] Chr12:32324955..32335627 [GRCh37]
Chr12:12p11.21		 benign
GRCh37/hg19 12p11.21(chr12:32331669-32335627)x1 copy number loss not provided [RCV000750359] Chr12:32331669..32335627 [GRCh37]
Chr12:12p11.21		 benign
NM_001714.4(BICD1):c.321G>A (p.Gly107=) single nucleotide variant not provided [RCV000959263] Chr12:32216354 [GRCh38]
Chr12:32369288 [GRCh37]
Chr12:12p11.21		 benign
GRCh37/hg19 12p11.21(chr12:31453473-33040145)x3 copy number gain not provided [RCV000849278] Chr12:31453473..33040145 [GRCh37]
Chr12:12p11.21		 uncertain significance
GRCh37/hg19 12p13.33-11.1(chr12:173786-34496628)x3 copy number gain not provided [RCV000847209] Chr12:173786..34496628 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
GRCh37/hg19 12p13.33-q11(chr12:274676-37869301)x4 copy number gain not provided [RCV001006470] Chr12:274676..37869301 [GRCh37]
Chr12:12p13.33-q11		 pathogenic
NM_001714.4(BICD1):c.2449G>A (p.Gly817Ser) single nucleotide variant not specified [RCV004293891] Chr12:32337695 [GRCh38]
Chr12:32490629 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.114G>A (p.Gly38=) single nucleotide variant not provided [RCV000889715] Chr12:32107445 [GRCh38]
Chr12:32260379 [GRCh37]
Chr12:12p11.21		 benign
GRCh37/hg19 12p11.21(chr12:32527412-32644720)x1 copy number loss not provided [RCV001258511] Chr12:32527412..32644720 [GRCh37]
Chr12:12p11.21		 uncertain significance
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837) copy number gain not specified [RCV002052957] Chr12:173786..34835837 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
GRCh37/hg19 12p13.33-q11(chr12:173786-37869301) copy number gain not specified [RCV002052958] Chr12:173786..37869301 [GRCh37]
Chr12:12p13.33-q11		 pathogenic
NM_001714.4(BICD1):c.2482A>G (p.Thr828Ala) single nucleotide variant not specified [RCV004325267] Chr12:32337728 [GRCh38]
Chr12:32490662 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1361A>C (p.Lys454Thr) single nucleotide variant not specified [RCV004316161] Chr12:32327816 [GRCh38]
Chr12:32480750 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.659C>T (p.Ala220Val) single nucleotide variant not specified [RCV004138662] Chr12:32305776 [GRCh38]
Chr12:32458710 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1385A>G (p.Tyr462Cys) single nucleotide variant not specified [RCV004243039] Chr12:32327840 [GRCh38]
Chr12:32480774 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.65A>G (p.Lys22Arg) single nucleotide variant not specified [RCV004129388] Chr12:32107396 [GRCh38]
Chr12:32260330 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1085C>T (p.Thr362Met) single nucleotide variant not specified [RCV004105690] Chr12:32327540 [GRCh38]
Chr12:32480474 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1020G>T (p.Lys340Asn) single nucleotide variant not specified [RCV004106460] Chr12:32327475 [GRCh38]
Chr12:32480409 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.188A>G (p.Lys63Arg) single nucleotide variant not specified [RCV004189345] Chr12:32107519 [GRCh38]
Chr12:32260453 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1663C>G (p.Pro555Ala) single nucleotide variant not specified [RCV004111533] Chr12:32328118 [GRCh38]
Chr12:32481052 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1403G>A (p.Ser468Asn) single nucleotide variant not specified [RCV004227804] Chr12:32327858 [GRCh38]
Chr12:32480792 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1107C>A (p.His369Gln) single nucleotide variant not specified [RCV004238900] Chr12:32327562 [GRCh38]
Chr12:32480496 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1427G>A (p.Ser476Asn) single nucleotide variant not specified [RCV004211316] Chr12:32327882 [GRCh38]
Chr12:32480816 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.346C>A (p.Leu116Met) single nucleotide variant not specified [RCV004173878] Chr12:32216379 [GRCh38]
Chr12:32369313 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1375A>C (p.Ile459Leu) single nucleotide variant not specified [RCV004135237] Chr12:32327830 [GRCh38]
Chr12:32480764 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.2879G>T (p.Ser960Ile) single nucleotide variant not specified [RCV004244377] Chr12:32377578 [GRCh38]
Chr12:32530512 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.2485G>A (p.Val829Met) single nucleotide variant not specified [RCV004092178] Chr12:32337731 [GRCh38]
Chr12:32490665 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.625G>C (p.Glu209Gln) single nucleotide variant not specified [RCV004081443] Chr12:32305742 [GRCh38]
Chr12:32458676 [GRCh37]
Chr12:12p11.21		 uncertain significance
GRCh37/hg19 12p13.33-11.1(chr12:176047-34179852)x4 copy number gain Pallister-Killian syndrome [RCV003154827] Chr12:176047..34179852 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
NM_001714.4(BICD1):c.1856G>A (p.Arg619His) single nucleotide variant not specified [RCV004275202] Chr12:32328311 [GRCh38]
Chr12:32481245 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.2447T>C (p.Ile816Thr) single nucleotide variant not specified [RCV004252635] Chr12:32337693 [GRCh38]
Chr12:32490627 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1930G>C (p.Asp644His) single nucleotide variant not specified [RCV004265588] Chr12:32328385 [GRCh38]
Chr12:32481319 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.392A>G (p.Glu131Gly) single nucleotide variant not specified [RCV004362989] Chr12:32216425 [GRCh38]
Chr12:32369359 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.264G>C (p.Glu88Asp) single nucleotide variant not specified [RCV004335952] Chr12:32216297 [GRCh38]
Chr12:32369231 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.87C>G (p.His29Gln) single nucleotide variant not specified [RCV004337307] Chr12:32107418 [GRCh38]
Chr12:32260352 [GRCh37]
Chr12:12p11.21		 uncertain significance
Single allele duplication not provided [RCV003448692] Chr12:188053..34856694 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
NM_001714.4(BICD1):c.213+75_213+77del microsatellite not provided [RCV003391697] Chr12:32107616..32107618 [GRCh38]
Chr12:32260550..32260552 [GRCh37]
Chr12:12p11.21		 likely benign
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835641)x3 copy number gain not specified [RCV003986979] Chr12:173786..34835641 [GRCh37]
Chr12:12p13.33-11.1		 pathogenic
NM_001714.4(BICD1):c.1463A>G (p.Gln488Arg) single nucleotide variant not specified [RCV004429135] Chr12:32327918 [GRCh38]
Chr12:32480852 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1842T>G (p.Asp614Glu) single nucleotide variant not specified [RCV004429139] Chr12:32328297 [GRCh38]
Chr12:32481231 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1940T>C (p.Leu647Ser) single nucleotide variant not specified [RCV004429140] Chr12:32328395 [GRCh38]
Chr12:32481329 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1458G>C (p.Glu486Asp) single nucleotide variant not specified [RCV004429134] Chr12:32327913 [GRCh38]
Chr12:32480847 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.152A>G (p.Gln51Arg) single nucleotide variant not specified [RCV004429137] Chr12:32107483 [GRCh38]
Chr12:32260417 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.678T>G (p.Ile226Met) single nucleotide variant not specified [RCV004429147] Chr12:32305795 [GRCh38]
Chr12:32458729 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1676T>C (p.Leu559Ser) single nucleotide variant not specified [RCV004429138] Chr12:32328131 [GRCh38]
Chr12:32481065 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.391G>A (p.Glu131Lys) single nucleotide variant not specified [RCV004429145] Chr12:32216424 [GRCh38]
Chr12:32369358 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.403G>T (p.Ala135Ser) single nucleotide variant not specified [RCV004429146] Chr12:32216436 [GRCh38]
Chr12:32369370 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1445A>G (p.His482Arg) single nucleotide variant not specified [RCV004429133] Chr12:32327900 [GRCh38]
Chr12:32480834 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.146A>C (p.Lys49Thr) single nucleotide variant not specified [RCV004429136] Chr12:32107477 [GRCh38]
Chr12:32260411 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.2155A>G (p.Met719Val) single nucleotide variant not specified [RCV004429143] Chr12:32334570 [GRCh38]
Chr12:32487504 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.952T>G (p.Phe318Val) single nucleotide variant not specified [RCV004429148] Chr12:32306069 [GRCh38]
Chr12:32459003 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.2125C>A (p.Leu709Ile) single nucleotide variant not specified [RCV004429141] Chr12:32334540 [GRCh38]
Chr12:32487474 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.2767T>A (p.Cys923Ser) single nucleotide variant not specified [RCV004429144] Chr12:32367672 [GRCh38]
Chr12:32520606 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.31G>A (p.Asp11Asn) single nucleotide variant not specified [RCV004600242] Chr12:32107362 [GRCh38]
Chr12:32260296 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.2643A>T (p.Leu881Phe) single nucleotide variant not specified [RCV004607037] Chr12:32338858 [GRCh38]
Chr12:32491792 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1139G>T (p.Gly380Val) single nucleotide variant not specified [RCV004607038] Chr12:32327594 [GRCh38]
Chr12:32480528 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1099C>T (p.Arg367Trp) single nucleotide variant not specified [RCV004600241] Chr12:32327554 [GRCh38]
Chr12:32480488 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.2718A>T (p.Gln906His) single nucleotide variant not specified [RCV004600245] Chr12:32338933 [GRCh38]
Chr12:32491867 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.2903G>C (p.Cys968Ser) single nucleotide variant not specified [RCV004600247] Chr12:32377602 [GRCh38]
Chr12:32530536 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1508C>T (p.Thr503Met) single nucleotide variant not specified [RCV004600244] Chr12:32327963 [GRCh38]
Chr12:32480897 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.2419A>G (p.Ser807Gly) single nucleotide variant not specified [RCV004600243] Chr12:32337665 [GRCh38]
Chr12:32490599 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.1109G>A (p.Arg370Gln) single nucleotide variant not specified [RCV004600248] Chr12:32327564 [GRCh38]
Chr12:32480498 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.2873A>G (p.His958Arg) single nucleotide variant not specified [RCV004607036] Chr12:32377572 [GRCh38]
Chr12:32530506 [GRCh37]
Chr12:12p11.21		 uncertain significance
NM_001714.4(BICD1):c.2758C>A (p.Pro920Thr) single nucleotide variant not specified [RCV004600246] Chr12:32338973 [GRCh38]
Chr12:32491907 [GRCh37]
Chr12:12p11.21		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3705
Count of miRNA genes:1225
Interacting mature miRNAs:1571
Transcripts:ENST00000281474, ENST00000395758, ENST00000547680, ENST00000548411, ENST00000550207, ENST00000551086, ENST00000551848, ENST00000552160, ENST00000552226
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407293030GWAS942006_Hbrain measurement QTL GWAS942006 (human)3e-08brain measurementbrain measurement (CMO:0000911)123233041532330416Human
407195908GWAS844884_Hcardiac troponin T measurement QTL GWAS844884 (human)0.000007cardiac troponin T measurementblood troponin T level (CMO:0001284)123236095432360955Human
407009024GWAS658000_Hemphysema QTL GWAS658000 (human)0.0000006emphysema123222756732227568Human
407189281GWAS838257_Hcolor vision disorder QTL GWAS838257 (human)0.000004color vision disorder123235329032353291Human
407318082GWAS967058_Hcoffee consumption measurement QTL GWAS967058 (human)5e-08coffee consumption measurement123232910132329102Human
407129762GWAS778738_Hmultiple sclerosis QTL GWAS778738 (human)0.000004multiple sclerosis123232379332323794Human
407108036GWAS757012_Hself reported educational attainment QTL GWAS757012 (human)2e-09self reported educational attainment123231666732316668Human
407020714GWAS669690_Hpancreatic carcinoma QTL GWAS669690 (human)0.0000003pancreatic carcinoma123228347532283476Human
407238510GWAS887486_Hbrain measurement QTL GWAS887486 (human)5e-14brain measurementbrain measurement (CMO:0000911)123237956532379566Human
407034543GWAS683519_Hself reported educational attainment QTL GWAS683519 (human)5e-10self reported educational attainment123231666732316668Human
406942542GWAS591518_Hresponse to antihypertensive drug, left ventricular mass QTL GWAS591518 (human)0.0000001response to antihypertensive drug, left ventricular masscalculated heart left ventricle weight (CMO:0001123)123224693532246936Human
407392295GWAS1041271_Hthalamus volume QTL GWAS1041271 (human)4e-10thalamus volumeboth kidneys wet weight to body weight ratio (CMO:0000340)123231425932314260Human
407076908GWAS725884_Hself reported educational attainment QTL GWAS725884 (human)3e-09self reported educational attainment123231666732316668Human
406916366GWAS565342_Hneuroimaging measurement QTL GWAS565342 (human)4e-10neuroimaging measurement123237230632372307Human
407032306GWAS681282_Heducational attainment QTL GWAS681282 (human)3e-13educational attainment123234957132349572Human
407338070GWAS987046_Hhemoglobin A1 measurement QTL GWAS987046 (human)3e-08hemoglobin A1 measurement123232118332321184Human
407229430GWAS878406_Hbody height QTL GWAS878406 (human)2e-16body height (VT:0001253)body height (CMO:0000106)123237065832370659Human
406992950GWAS641926_Hurinary metabolite measurement QTL GWAS641926 (human)0.000007urinary metabolite measurement123210830532108306Human
406978039GWAS627015_Hbody weight QTL GWAS627015 (human)0.000004body mass (VT:0001259)body weight (CMO:0000012)123222756732227568Human
407192851GWAS841827_Heducational attainment QTL GWAS841827 (human)4e-08educational attainment123230613632306137Human
406984248GWAS633224_Hneuroimaging measurement, brain volume measurement QTL GWAS633224 (human)8e-10neuroimaging measurement, brain volume measurementbrain morphological measurement (CMO:0000136)123237230932372310Human
406979737GWAS628713_Hfourth ventricle volume measurement QTL GWAS628713 (human)0.000004fourth ventricle size trait (VT:0000829)123226531732265318Human
406911515GWAS560491_Hbreast density QTL GWAS560491 (human)0.000009breast density123237860532378606Human

Markers in Region
D12S1308  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371232,273,192 - 32,273,405UniSTSGRCh37
Build 361232,164,459 - 32,164,672RGDNCBI36
Celera1212,094,133 - 12,094,346RGD
Cytogenetic Map12p11.2-p11.1UniSTS
HuRef1232,024,752 - 32,024,965UniSTS
Whitehead-RH Map12202.7UniSTS
Whitehead-YAC Contig Map12 UniSTS
RH92916  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371232,501,479 - 32,501,558UniSTSGRCh37
Build 361232,392,746 - 32,392,825RGDNCBI36
Celera1212,321,924 - 12,322,003RGD
Cytogenetic Map12p11.2-p11.1UniSTS
HuRef1232,253,163 - 32,253,242UniSTS
GeneMap99-GB4 RH Map12136.46UniSTS
RH94291  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371232,260,068 - 32,260,190UniSTSGRCh37
Build 361232,151,335 - 32,151,457RGDNCBI36
Celera1212,081,030 - 12,081,152RGD
Cytogenetic Map12p11.2-p11.1UniSTS
HuRef1232,011,654 - 32,011,776UniSTS
GeneMap99-GB4 RH Map12130.61UniSTS
RH93400  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371232,494,111 - 32,494,322UniSTSGRCh37
Build 361232,385,378 - 32,385,589RGDNCBI36
Celera1212,314,634 - 12,314,845RGD
Cytogenetic Map12p11.2-p11.1UniSTS
HuRef1232,245,707 - 32,245,918UniSTS
GeneMap99-GB4 RH Map12139.0UniSTS
RH120415  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371232,313,917 - 32,314,214UniSTSGRCh37
Build 361232,205,184 - 32,205,481RGDNCBI36
Celera1212,134,298 - 12,134,595RGD
Cytogenetic Map12p11.2-p11.1UniSTS
HuRef1232,065,360 - 32,065,657UniSTS
TNG Radiation Hybrid Map1214798.0UniSTS
D12S911  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371232,490,272 - 32,490,690UniSTSGRCh37
Build 361232,381,539 - 32,381,957RGDNCBI36
Celera1212,310,795 - 12,311,213RGD
Cytogenetic Map12p11.2-p11.1UniSTS
HuRef1232,241,866 - 32,242,284UniSTS
D12S934  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371232,441,981 - 32,442,361UniSTSGRCh37
Build 361232,333,248 - 32,333,628RGDNCBI36
Celera1212,262,480 - 12,262,860RGD
Cytogenetic Map12p11.2-p11.1UniSTS
HuRef1232,193,884 - 32,194,264UniSTS
SHGC-133101  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371232,493,374 - 32,493,646UniSTSGRCh37
Build 361232,384,641 - 32,384,913RGDNCBI36
Celera1212,313,897 - 12,314,169RGD
Cytogenetic Map12p11.2-p11.1UniSTS
HuRef1232,244,970 - 32,245,242UniSTS
TNG Radiation Hybrid Map1214853.0UniSTS
BICD1_8231  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371232,530,738 - 32,531,295UniSTSGRCh37
Build 361232,422,005 - 32,422,562RGDNCBI36
Celera1212,351,132 - 12,351,689RGD
HuRef1232,283,010 - 32,283,567UniSTS
WI-5606  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371232,337,998 - 32,338,122UniSTSGRCh37
Build 361232,229,265 - 32,229,389RGDNCBI36
Celera1212,158,412 - 12,158,536RGD
Cytogenetic Map12p11.2-p11.1UniSTS
HuRef1232,089,457 - 32,089,581UniSTS
Whitehead-RH Map12203.9UniSTS
STS-AA018216  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371232,491,343 - 32,491,497UniSTSGRCh37
Build 361232,382,610 - 32,382,764RGDNCBI36
Celera1212,311,866 - 12,312,020RGD
Cytogenetic Map12p11.2-p11.1UniSTS
HuRef1232,242,937 - 32,243,091UniSTS
GeneMap99-GB4 RH Map12133.83UniSTS
SHGC-64856  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371232,493,551 - 32,493,643UniSTSGRCh37
Build 361232,384,818 - 32,384,910RGDNCBI36
Celera1212,314,074 - 12,314,166RGD
Cytogenetic Map12p11.2-p11.1UniSTS
HuRef1232,245,147 - 32,245,239UniSTS
RH66618  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371232,509,361 - 32,509,527UniSTSGRCh37
Build 361232,400,628 - 32,400,794RGDNCBI36
Celera1212,329,766 - 12,329,932RGD
Cytogenetic Map12p11.2-p11.1UniSTS
HuRef1232,261,006 - 32,261,172UniSTS
GeneMap99-GB4 RH Map12130.28UniSTS
D20S431  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372017,372,483 - 17,372,770UniSTSGRCh37
GRCh371232,384,352 - 32,384,660UniSTSGRCh37
Build 361232,275,619 - 32,275,927RGDNCBI36
Celera1212,204,780 - 12,205,088RGD
Celera2017,446,931 - 17,447,219UniSTS
Cytogenetic Map20p11.2UniSTS
Cytogenetic Map12p11.2-p11.1UniSTS
HuRef2017,335,447 - 17,335,718UniSTS
fj02h10.x1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371232,306,713 - 32,308,363UniSTSGRCh37
Celera1212,127,099 - 12,128,746UniSTS
HuRef1232,058,098 - 32,059,745UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1204 2436 2788 2246 4965 1724 2348 5 621 1949 464 2268 7290 6460 52 3730 850 1740 1614 171

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001003398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001354186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001354187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001354188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001354189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001413183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_148725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011520813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011520814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011520815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047429325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054372858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054372859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054372860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002957369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA207154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AA249429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC016954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC026356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC048344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC087245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC087316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK313430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL117598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AU132680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC136372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U90028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U90030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000395758   ⟹   ENSP00000379107
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1232,107,252 - 32,377,923 (+)Ensembl
Ensembl Acc Id: ENST00000547680   ⟹   ENSP00000475837
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1232,328,402 - 32,333,065 (+)Ensembl
Ensembl Acc Id: ENST00000548411   ⟹   ENSP00000446793
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1232,106,847 - 32,383,633 (+)Ensembl
Ensembl Acc Id: ENST00000550207   ⟹   ENSP00000447663
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1232,106,885 - 32,108,329 (+)Ensembl
Ensembl Acc Id: ENST00000551086   ⟹   ENSP00000447238
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1232,107,296 - 32,108,806 (+)Ensembl
Ensembl Acc Id: ENST00000551848   ⟹   ENSP00000448933
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1232,106,835 - 32,108,796 (+)Ensembl
Ensembl Acc Id: ENST00000552160   ⟹   ENSP00000481877
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1232,334,517 - 32,338,930 (+)Ensembl
Ensembl Acc Id: ENST00000552226
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1232,337,499 - 32,339,120 (+)Ensembl
Ensembl Acc Id: ENST00000614004
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1232,367,534 - 32,368,062 (+)Ensembl
Ensembl Acc Id: ENST00000652176   ⟹   ENSP00000498700
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1232,106,847 - 32,383,633 (+)Ensembl
RefSeq Acc Id: NM_001003398   ⟹   NP_001003398
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,383,633 (+)NCBI
GRCh371232,259,713 - 32,536,567 (+)NCBI
Build 361232,151,452 - 32,422,408 (+)NCBI Archive
HuRef1232,011,771 - 32,283,413 (+)ENTREZGENE
CHM1_11232,226,441 - 32,497,738 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,259,851 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001354186   ⟹   NP_001341115
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,383,633 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,259,851 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001354187   ⟹   NP_001341116
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,383,633 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,259,851 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001354188   ⟹   NP_001341117
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,383,633 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,259,851 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001354189   ⟹   NP_001341118
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,333,065 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,209,273 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363603   ⟹   NP_001350532
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,340,720 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,216,929 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001413155   ⟹   NP_001400084
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,368,062 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,244,279 (+)NCBI
RefSeq Acc Id: NM_001413156   ⟹   NP_001400085
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,348,403 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,224,639 (+)NCBI
RefSeq Acc Id: NM_001413157   ⟹   NP_001400086
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,368,062 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,244,279 (+)NCBI
RefSeq Acc Id: NM_001413158   ⟹   NP_001400087
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,383,633 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,259,851 (+)NCBI
RefSeq Acc Id: NM_001413159   ⟹   NP_001400088
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,368,062 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,244,279 (+)NCBI
RefSeq Acc Id: NM_001413160   ⟹   NP_001400089
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,368,062 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,244,279 (+)NCBI
RefSeq Acc Id: NM_001413161   ⟹   NP_001400090
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,340,720 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,216,929 (+)NCBI
RefSeq Acc Id: NM_001413163   ⟹   NP_001400092
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,383,633 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,259,851 (+)NCBI
RefSeq Acc Id: NM_001413164   ⟹   NP_001400093
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,368,062 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,244,279 (+)NCBI
RefSeq Acc Id: NM_001413165   ⟹   NP_001400094
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,340,720 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,216,929 (+)NCBI
RefSeq Acc Id: NM_001413166   ⟹   NP_001400095
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,383,633 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,259,851 (+)NCBI
RefSeq Acc Id: NM_001413167   ⟹   NP_001400096
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,383,633 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,259,851 (+)NCBI
RefSeq Acc Id: NM_001413168   ⟹   NP_001400097
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,383,633 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,259,851 (+)NCBI
RefSeq Acc Id: NM_001413169   ⟹   NP_001400098
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,355,329 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,231,560 (+)NCBI
RefSeq Acc Id: NM_001413170   ⟹   NP_001400099
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,333,065 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,209,273 (+)NCBI
RefSeq Acc Id: NM_001413171   ⟹   NP_001400100
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,383,633 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,259,851 (+)NCBI
RefSeq Acc Id: NM_001413172   ⟹   NP_001400101
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,383,633 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,259,851 (+)NCBI
RefSeq Acc Id: NM_001413173   ⟹   NP_001400102
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,309,173 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,185,377 (+)NCBI
RefSeq Acc Id: NM_001413174   ⟹   NP_001400103
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,222,970 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,099,197 (+)NCBI
RefSeq Acc Id: NM_001413176   ⟹   NP_001400105
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,222,970 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,099,197 (+)NCBI
RefSeq Acc Id: NM_001413177   ⟹   NP_001400106
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,251,211 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,127,430 (+)NCBI
RefSeq Acc Id: NM_001413178   ⟹   NP_001400107
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,224,086 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,100,313 (+)NCBI
RefSeq Acc Id: NM_001413179   ⟹   NP_001400108
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,222,970 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,099,197 (+)NCBI
RefSeq Acc Id: NM_001413180   ⟹   NP_001400109
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,108,808 (+)NCBI
T2T-CHM13v2.01231,983,002 - 31,984,971 (+)NCBI
RefSeq Acc Id: NM_001413181   ⟹   NP_001400110
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,120,343 (+)NCBI
T2T-CHM13v2.01231,983,002 - 31,996,544 (+)NCBI
RefSeq Acc Id: NM_001413182   ⟹   NP_001400111
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,108,808 (+)NCBI
T2T-CHM13v2.01231,983,002 - 31,984,971 (+)NCBI
RefSeq Acc Id: NM_001413183   ⟹   NP_001400112
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,108,808 (+)NCBI
T2T-CHM13v2.01231,983,002 - 31,984,971 (+)NCBI
RefSeq Acc Id: NM_001714   ⟹   NP_001705
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,383,633 (+)NCBI
GRCh371232,259,713 - 32,536,567 (+)NCBI
Build 361232,151,452 - 32,422,408 (+)NCBI Archive
HuRef1232,011,771 - 32,283,413 (+)ENTREZGENE
CHM1_11232,226,441 - 32,497,738 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,259,851 (+)NCBI
Sequence:
RefSeq Acc Id: NR_148725
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,383,633 (+)NCBI
T2T-CHM13v2.01231,983,002 - 32,259,851 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011520813   ⟹   XP_011519115
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,368,062 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011520814   ⟹   XP_011519116
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,383,633 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047429325   ⟹   XP_047285281
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,368,062 (+)NCBI
RefSeq Acc Id: XM_054372858   ⟹   XP_054228833
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01231,983,002 - 32,244,279 (+)NCBI
RefSeq Acc Id: XM_054372859   ⟹   XP_054228834
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01231,983,002 - 32,259,851 (+)NCBI
RefSeq Acc Id: XM_054372860   ⟹   XP_054228835
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01231,983,002 - 32,244,279 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001003398 (Get FASTA)   NCBI Sequence Viewer  
  NP_001341115 (Get FASTA)   NCBI Sequence Viewer  
  NP_001341116 (Get FASTA)   NCBI Sequence Viewer  
  NP_001341117 (Get FASTA)   NCBI Sequence Viewer  
  NP_001341118 (Get FASTA)   NCBI Sequence Viewer  
  NP_001350532 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400084 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400085 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400086 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400087 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400088 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400089 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400090 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400092 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400093 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400094 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400095 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400096 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400097 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400098 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400099 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400100 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400101 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400102 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400103 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400105 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400106 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400107 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400108 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400109 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400110 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400111 (Get FASTA)   NCBI Sequence Viewer  
  NP_001400112 (Get FASTA)   NCBI Sequence Viewer  
  NP_001705 (Get FASTA)   NCBI Sequence Viewer  
  XP_011519115 (Get FASTA)   NCBI Sequence Viewer  
  XP_011519116 (Get FASTA)   NCBI Sequence Viewer  
  XP_047285281 (Get FASTA)   NCBI Sequence Viewer  
  XP_054228833 (Get FASTA)   NCBI Sequence Viewer  
  XP_054228834 (Get FASTA)   NCBI Sequence Viewer  
  XP_054228835 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB94805 (Get FASTA)   NCBI Sequence Viewer  
  AAB94806 (Get FASTA)   NCBI Sequence Viewer  
  AAI36373 (Get FASTA)   NCBI Sequence Viewer  
  BAF82877 (Get FASTA)   NCBI Sequence Viewer  
  EAW88532 (Get FASTA)   NCBI Sequence Viewer  
  EAW88533 (Get FASTA)   NCBI Sequence Viewer  
  EAW88534 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000379107
  ENSP00000379107.3
  ENSP00000446793
  ENSP00000446793.1
  ENSP00000447238.1
  ENSP00000447663
  ENSP00000447663.1
  ENSP00000448933.1
  ENSP00000475837.1
  ENSP00000481877.1
  ENSP00000498700
  ENSP00000498700.1
GenBank Protein Q96G01 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001705   ⟸   NM_001714
- Peptide Label: isoform 1
- UniProtKB: O43892 (UniProtKB/Swiss-Prot),   F8W113 (UniProtKB/Swiss-Prot),   A8K2C3 (UniProtKB/Swiss-Prot),   O43893 (UniProtKB/Swiss-Prot),   Q96G01 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001003398   ⟸   NM_001003398
- Peptide Label: isoform 2
- UniProtKB: Q96G01 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011519116   ⟸   XM_011520814
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011519115   ⟸   XM_011520813
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001341115   ⟸   NM_001354186
- Peptide Label: isoform 3
- Sequence:
RefSeq Acc Id: NP_001341116   ⟸   NM_001354187
- Peptide Label: isoform 4
- Sequence:
RefSeq Acc Id: NP_001341117   ⟸   NM_001354188
- Peptide Label: isoform 5
- Sequence:
RefSeq Acc Id: NP_001341118   ⟸   NM_001354189
- Peptide Label: isoform 6
- Sequence:
RefSeq Acc Id: NP_001350532   ⟸   NM_001363603
- Peptide Label: isoform 7
- UniProtKB: B9EGC4 (UniProtKB/TrEMBL),   A8MVZ6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSP00000475837   ⟸   ENST00000547680
Ensembl Acc Id: ENSP00000446793   ⟸   ENST00000548411
Ensembl Acc Id: ENSP00000498700   ⟸   ENST00000652176
Ensembl Acc Id: ENSP00000447663   ⟸   ENST00000550207
Ensembl Acc Id: ENSP00000447238   ⟸   ENST00000551086
Ensembl Acc Id: ENSP00000448933   ⟸   ENST00000551848
Ensembl Acc Id: ENSP00000481877   ⟸   ENST00000552160
Ensembl Acc Id: ENSP00000379107   ⟸   ENST00000395758
RefSeq Acc Id: XP_047285281   ⟸   XM_047429325
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001400097   ⟸   NM_001413168
- Peptide Label: isoform 19
RefSeq Acc Id: NP_001400087   ⟸   NM_001413158
- Peptide Label: isoform 10
RefSeq Acc Id: NP_001400096   ⟸   NM_001413167
- Peptide Label: isoform 18
RefSeq Acc Id: NP_001400095   ⟸   NM_001413166
- Peptide Label: isoform 17
RefSeq Acc Id: NP_001400092   ⟸   NM_001413163
- Peptide Label: isoform 14
RefSeq Acc Id: NP_001400101   ⟸   NM_001413172
- Peptide Label: isoform 23
RefSeq Acc Id: NP_001400100   ⟸   NM_001413171
- Peptide Label: isoform 22
RefSeq Acc Id: NP_001400088   ⟸   NM_001413159
- Peptide Label: isoform 11
RefSeq Acc Id: NP_001400086   ⟸   NM_001413157
- Peptide Label: isoform 9
RefSeq Acc Id: NP_001400089   ⟸   NM_001413160
- Peptide Label: isoform 12
RefSeq Acc Id: NP_001400093   ⟸   NM_001413164
- Peptide Label: isoform 15
RefSeq Acc Id: NP_001400084   ⟸   NM_001413155
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001400098   ⟸   NM_001413169
- Peptide Label: isoform 20
RefSeq Acc Id: NP_001400085   ⟸   NM_001413156
- Peptide Label: isoform 8
RefSeq Acc Id: NP_001400090   ⟸   NM_001413161
- Peptide Label: isoform 13
RefSeq Acc Id: NP_001400094   ⟸   NM_001413165
- Peptide Label: isoform 16
RefSeq Acc Id: NP_001400099   ⟸   NM_001413170
- Peptide Label: isoform 21
RefSeq Acc Id: NP_001400102   ⟸   NM_001413173
- Peptide Label: isoform 24
RefSeq Acc Id: NP_001400106   ⟸   NM_001413177
- Peptide Label: isoform 27
RefSeq Acc Id: NP_001400107   ⟸   NM_001413178
- Peptide Label: isoform 28
RefSeq Acc Id: NP_001400108   ⟸   NM_001413179
- Peptide Label: isoform 29
RefSeq Acc Id: NP_001400105   ⟸   NM_001413176
- Peptide Label: isoform 26
RefSeq Acc Id: NP_001400103   ⟸   NM_001413174
- Peptide Label: isoform 25
RefSeq Acc Id: NP_001400110   ⟸   NM_001413181
- Peptide Label: isoform 31
RefSeq Acc Id: NP_001400111   ⟸   NM_001413182
- Peptide Label: isoform 32
- UniProtKB: F8VZX7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001400112   ⟸   NM_001413183
- Peptide Label: isoform 33
RefSeq Acc Id: NP_001400109   ⟸   NM_001413180
- Peptide Label: isoform 30
RefSeq Acc Id: XP_054228834   ⟸   XM_054372859
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054228833   ⟸   XM_054372858
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054228835   ⟸   XM_054372860
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96G01-F1-model_v2 AlphaFold Q96G01 1-975 view protein structure

Promoters
RGD ID:7223587
Promoter ID:EPDNEW_H17538
Type:initiation region
Name:BICD1_1
Description:BICD cargo adaptor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H17539  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,106,847 - 32,106,907EPDNEW
RGD ID:7223585
Promoter ID:EPDNEW_H17539
Type:initiation region
Name:BICD1_2
Description:BICD cargo adaptor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H17538  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381232,107,159 - 32,107,219EPDNEW
RGD ID:6789719
Promoter ID:HG_KWN:15323
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000395758,   NM_001714
Position:
Human AssemblyChrPosition (strand)Source
Build 361232,150,926 - 32,151,817 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:1049 AgrOrtholog
COSMIC BICD1 COSMIC
Ensembl Genes ENSG00000151746 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000395758 ENTREZGENE
  ENST00000395758.3 UniProtKB/TrEMBL
  ENST00000547680.2 UniProtKB/TrEMBL
  ENST00000548411 ENTREZGENE
  ENST00000548411.6 UniProtKB/Swiss-Prot
  ENST00000550207 ENTREZGENE
  ENST00000550207.1 UniProtKB/TrEMBL
  ENST00000551086.1 UniProtKB/TrEMBL
  ENST00000551848.1 UniProtKB/Swiss-Prot
  ENST00000552160.2 UniProtKB/TrEMBL
  ENST00000652176 ENTREZGENE
  ENST00000652176.1 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.250.2470 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000151746 GTEx
HGNC ID HGNC:1049 ENTREZGENE
Human Proteome Map BICD1 Human Proteome Map
InterPro BICD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:636 UniProtKB/Swiss-Prot
NCBI Gene 636 ENTREZGENE
OMIM 602204 OMIM
PANTHER PROTEIN BICAUDAL D HOMOLOG 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR31233 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BicD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA25352 PharmGKB
UniProt A0A087WYJ7_HUMAN UniProtKB/TrEMBL
  A8K2C3 ENTREZGENE
  A8MVZ6 ENTREZGENE, UniProtKB/TrEMBL
  B9EGC4 ENTREZGENE
  BICD1_HUMAN UniProtKB/Swiss-Prot
  F8VZX7 ENTREZGENE, UniProtKB/TrEMBL
  F8W056_HUMAN UniProtKB/TrEMBL
  F8W113 ENTREZGENE
  O43892 ENTREZGENE
  O43893 ENTREZGENE
  Q96G01 ENTREZGENE
  U3KQF7_HUMAN UniProtKB/TrEMBL
UniProt Secondary A8K2C3 UniProtKB/Swiss-Prot
  B9EGC4 UniProtKB/TrEMBL
  F8W113 UniProtKB/Swiss-Prot
  O43892 UniProtKB/Swiss-Prot
  O43893 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-04 BICD1  BICD cargo adaptor 1  BICD1  bicaudal D homolog 1 (Drosophila)  Symbol and/or name change 5135510 APPROVED