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ONTOLOGY REPORT - ANNOTATIONS

Term:retinal binding
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Accession:GO:0016918 term browser browse the term
Definition:Binding to retinal, one of the forms of vitamin A. Retinal plays an important role in the visual process in most vertebrates, combining with opsins to form visual pigments in the retina.
Synonyms:exact_synonym: retinaldehyde binding
 broad_synonym: vitamin A binding
 related_synonym: UV-sensitive opsin;   blue-sensitive opsin;   green-sensitive opsin;   long-wave-sensitive opsin;   opsin;   red-sensitive opsin;   short-wave-sensitive opsin;   violet-sensitive opsin

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show annotations for term's descendants           Sort by:
retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO RGD PMID:8663198 RGD:724800 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479 		JBrowse link
G Rbp4 retinol binding protein 4 enables IEA UniProt GO_REF:0000043 NCBI chrNW_004624737:4,795,054...4,800,830
Ensembl chrNW_004624737:4,791,628...4,800,989 		JBrowse link
G Rho rhodopsin ISO 9-cis retinaldehyde
9-cis and 11-cis retinal		 RGD PMID:2525480 PMID:8814134 RGD:6893558 RGD:6893595 NCBI chrNW_004624872:523,892...528,278
Ensembl chrNW_004624872:523,912...527,615 		JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 enables IEA UniProt GO_REF:0000043 NCBI chrNW_004624781:304,890...413,655
Ensembl chrNW_004624781:389,481...413,728 		JBrowse link
11-cis retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 enables ISO (PMID:23144455) UniProt PMID:23144455 NCBI chrNW_004624742:3,536,591...3,661,706
Ensembl chrNW_004624742:3,536,591...3,661,468 		JBrowse link
G Opn3 opsin 3 enables ISO (PMID:31097585) UniProt PMID:31097585 NCBI chrNW_004624771:11,943,894...11,991,477
Ensembl chrNW_004624771:11,943,914...11,991,411 		JBrowse link
G Opn4 opsin 4 enables ISO (PMID:15674244) UniProt PMID:15674244 NCBI chrNW_004624841:472,053...483,623
Ensembl chrNW_004624841:474,035...482,475 		JBrowse link
G Opn5 opsin 5 enables ISO (MGI:6230806|PMID:22043319)
(PMID:24403072)
(PMID:22043319)		 UniProt
MGI		 PMID:22043319 PMID:24403072 MGI:6230806 NCBI chrNW_004624754:13,307,738...13,332,287
Ensembl chrNW_004624754:13,307,738...13,332,287 		JBrowse link
G Rlbp1 retinaldehyde binding protein 1 enables ISO (PMID:9326942) MGI PMID:9326942 NCBI chrNW_004624768:16,410,328...16,423,722
Ensembl chrNW_004624768:16,406,925...16,421,385 		JBrowse link
all-trans retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 enables ISO (PMID:20404325), (PMID:29847635), (PMID:33375396) UniProt PMID:20404325 PMID:29847635 PMID:33375396 NCBI chrNW_004624742:3,536,591...3,661,706
Ensembl chrNW_004624742:3,536,591...3,661,468 		JBrowse link
G LOC101698313 cytochrome P450 2W1 enables ISO (PMID:26936974) UniProt PMID:26936974 NCBI chrNW_004624740:26,545,725...26,551,906
Ensembl chrNW_004624740:26,544,715...26,549,433 		JBrowse link
G Opn3 opsin 3 enables ISO (PMID:31097585) UniProt PMID:31097585 NCBI chrNW_004624771:11,943,894...11,991,477
Ensembl chrNW_004624771:11,943,914...11,991,411 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 16311
    binding 14837
      small molecule binding 4415
        vitamin binding 124
          retinal binding 10
            11-cis retinal binding 5
            all-trans retinal binding 3
Path 2
Term Annotations click to browse term
  molecular_function 16311
    binding 14837
      lipid binding 731
        isoprenoid binding 26
          retinoid binding 25
            retinal binding 10
              11-cis retinal binding 5
              all-trans retinal binding 3
paths to the root