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ONTOLOGY REPORT - ANNOTATIONS

Term:retinoid binding
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Accession:GO:0005501 term browser browse the term
Definition:Interacting selectively and non-covalently with retinoids, any member of a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity.
Synonyms:xref: reactome:R-HSA-2454113 "RBP3 transports 11cRAL to rod photoreceptor outer segment";   reactome:R-HSA-2464809 "RBP3 regulates the transport of atROL from ROS to RPE";   reactome:R-HSA-2465934 "11cROL translocates from Muller cells to cone photoreceptor cells";   reactome:R-HSA-2465938 "RBP3 regulates atROL taken up by Muller cells"
 only_in_taxon: NCBITaxon:33208 ! Metazoa

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retinoid binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptgds prostaglandin D2 synthase IDA
ISO		 PMID:9188476
(MGI:3761957|PMID:17715133)		 RGD PMID:17715133, PMID:9188476 MGI:3761957, RGD:8553602 NCBI chr 3:2,686,125...2,689,059
Ensembl chr 3:2,686,123...2,689,084 		JBrowse link
G Rbp7 retinol binding protein 7 ISO (MGI:1929306|PMID:11022035) RGD PMID:11022035 MGI:1929306 NCBI chr 5:166,278,214...166,282,832
Ensembl chr 5:166,278,187...166,282,831 		JBrowse link
11-cis retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Opn3 opsin 3 ISO
IEA		 (PMID:31097585)
GO_REF:0000107		 RGD
Ensembl		 PMID:31097585 GO_REF:0000107 NCBI chr13:93,716,481...93,746,994
Ensembl chr13:93,716,481...93,746,994 		JBrowse link
G Opn4 opsin 4 ISO
ISS		 (PMID:15674244)
GO_REF:0000024		 RGD
UniProt		 PMID:15674244 GO_REF:0000024 NCBI chr16:10,943,353...10,966,602
Ensembl chr16:10,943,341...10,952,549 		JBrowse link
G Opn5 opsin 5 ISO (PMID:22043319)
(MGI:5582695|PMID:24403072), (MGI:6230806|PMID:22043319)		 RGD PMID:22043319 PMID:24403072 MGI:5582695 MGI:6230806 NCBI chr 9:21,045,457...21,092,517
Ensembl chr 9:21,045,457...21,093,172 		JBrowse link
G Rho rhodopsin ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298 		JBrowse link
G Rlbp1 retinaldehyde binding protein 1 ISO (MGI:1097298|PMID:9326942) RGD PMID:9326942 MGI:1097298 NCBI chr 1:141,097,789...141,111,375
Ensembl chr 1:141,097,695...141,111,400 		JBrowse link
all-trans retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide ISO (PMID:15369820) RGD PMID:15369820 NCBI chr 2:243,702,035...243,720,063
Ensembl chr 2:243,700,784...243,740,899 		JBrowse link
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 ISO (PMID:26936974) RGD PMID:26936974 NCBI chr12:17,382,749...17,387,909
Ensembl chr12:17,383,159...17,387,879 		JBrowse link
G Opn3 opsin 3 ISO
IEA		 (PMID:31097585)
GO_REF:0000107		 RGD
Ensembl		 PMID:31097585 GO_REF:0000107 NCBI chr13:93,716,481...93,746,994
Ensembl chr13:93,716,481...93,746,994 		JBrowse link
all-trans-retinol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 ISO (PMID:26936974) RGD PMID:26936974 NCBI chr12:17,382,749...17,387,909
Ensembl chr12:17,383,159...17,387,879 		JBrowse link
G Rbp1 retinol binding protein 1 ISO
ISS		 (PMID:28057518)
GO_REF:0000024		 RGD
UniProt		 PMID:28057518 GO_REF:0000024 NCBI chr 8:106,449,321...106,470,842
Ensembl chr 8:106,449,321...106,470,842 		JBrowse link
retinal binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1b10 aldo-keto reductase family 1 member B10 IDA RGD PMID:20709016 RGD:6903952 NCBI chr 4:61,813,265...61,830,371
Ensembl chr 4:61,771,970...61,828,657 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 IDA RGD PMID:8663198 RGD:724800 NCBI chr 8:77,640,234...77,719,488
Ensembl chr 8:77,640,222...77,719,489 		JBrowse link
G Crabp1 cellular retinoic acid binding protein 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:59,344,097...59,352,135
Ensembl chr 8:59,344,083...59,352,132 		JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:187,322,416...187,326,794
Ensembl chr 2:184,882,969...184,883,505 		JBrowse link
G Rbp1 retinol binding protein 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:106,449,321...106,470,842
Ensembl chr 8:106,449,321...106,470,842 		JBrowse link
G Rbp2 retinol binding protein 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:106,479,253...106,527,726
Ensembl chr 8:106,503,504...106,527,711 		JBrowse link
G Rbp4 retinol binding protein 4 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711 		JBrowse link
G Rho rhodopsin IDA 9-cis retinaldehyde
9-cis and 11-cis retinal		 RGD PMID:2525480, PMID:8814134 RGD:6893558, RGD:6893595 NCBI chr 4:147,832,136...147,837,298
Ensembl chr 4:147,832,136...147,837,298 		JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437 		JBrowse link
retinoic acid binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crabp1 cellular retinoic acid binding protein 1 IDA RGD PMID:1967079 RGD:6771321 NCBI chr 8:59,344,097...59,352,135
Ensembl chr 8:59,344,083...59,352,132 		JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 IDA
ISO		 (MGI:1313226|PMID:9826179) RGD PMID:9826179, PMID:1967079 MGI:1313226, RGD:6771321 NCBI chr 2:187,322,416...187,326,794
Ensembl chr 2:184,882,969...184,883,505 		JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 ISO (PMID:10823918) RGD PMID:10823918 NCBI chr 1:256,382,861...256,386,729
Ensembl chr 1:256,382,791...256,386,729 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 ISO (PMID:10823918) RGD PMID:10823918 NCBI chr 4:116,261,796...116,278,615
Ensembl chr 4:116,261,796...116,278,615 		JBrowse link
G Cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 ISO (PMID:14532297) RGD PMID:14532297 NCBI chr 1:256,369,410...256,380,649
Ensembl chr 1:256,370,850...256,378,335 		JBrowse link
G Cyp2w1 cytochrome P450, family 2, subfamily w, polypeptide 1 ISO (PMID:26936974) RGD PMID:26936974 NCBI chr12:17,382,749...17,387,909
Ensembl chr12:17,383,159...17,387,879 		JBrowse link
G Fabp5 fatty acid binding protein 5 ISO (MGI:6158690|PMID:17512406) RGD PMID:17512406 MGI:6158690 NCBI chr 2:93,981,662...93,985,322
Ensembl chr 2:93,981,656...93,985,378 		JBrowse link
G Igf2r insulin-like growth factor 2 receptor IDA RGD PMID:10470859 RGD:2311628 NCBI chr 1:48,176,095...48,264,482
Ensembl chr 1:48,176,106...48,264,477 		JBrowse link
G Lcn12 lipocalin 12 IDA PMID:20692383 UniProt PMID:20692383 RGD:8553409 NCBI chr 3:2,716,547...2,719,135
Ensembl chr 3:2,716,534...2,719,513 		JBrowse link
G Lrat lecithin retinol acyltransferase IDA RGD PMID:8460936, PMID:9244401 RGD:1599831, RGD:1599832 NCBI chr 2:181,896,304...181,905,366
Ensembl chr 2:181,896,305...181,905,300 		JBrowse link
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 ISO
IBA
ISS		 (PMID:18798693)
PMID:21873635
GO_REF:0000024		 RGD
UniProt		 PMID:18798693, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:131,447,671...131,465,749
Ensembl chr 1:131,448,447...131,460,473 		JBrowse link
G Rara retinoic acid receptor, alpha ISO (PMID:2825025) RGD PMID:2825025 NCBI chr10:86,838,819...86,884,224
Ensembl chr10:86,860,685...86,884,210 		JBrowse link
G Rxra retinoid X receptor alpha IEA
ISO		 GO_REF:0000107
(PMID:19043829)		 Ensembl
RGD		 PMID:19043829 GO_REF:0000107 NCBI chr 3:6,272,560...6,295,354
Ensembl chr 3:6,211,789...6,295,908 		JBrowse link
G Serpina5 serpin family A member 5 ISO (PMID:11722589) RGD PMID:11722589 NCBI chr 6:127,753,152...127,772,403
Ensembl chr 6:127,766,470...127,772,420 		JBrowse link
G Ugt1a1 UDP glucuronosyltransferase family 1 member A1 ISO (PMID:20308471) RGD PMID:20308471 NCBI chr 9:95,295,701...95,302,822
Ensembl chr 9:95,161,157...95,302,822 		JBrowse link
G Ugt1a2 UDP glucuronosyltransferase 1 family, polypeptide A2 ISO (PMID:20308471) RGD PMID:20308471 NCBI chr 9:95,285,592...95,302,822
Ensembl chr 9:95,161,157...95,302,822 		JBrowse link
G Ugt1a5 UDP glucuronosyltransferase family 1 member A5 NOT ISO (PMID:20308471) RGD PMID:20308471 NCBI chr 9:95,256,628...95,302,822
Ensembl chr 9:95,161,157...95,302,822 		JBrowse link
G Ugt1a6 UDP glucuronosyltransferase family 1 member A6 NOT ISO (PMID:20308471) RGD PMID:20308471 NCBI chr 9:95,241,609...95,302,822
Ensembl chr 9:95,161,157...95,302,822 		JBrowse link
G Ugt1a9 UDP glucuronosyltransferase family 1 member A9 ISO (PMID:20308471) RGD PMID:20308471 NCBI chr 9:95,161,157...95,302,822
Ensembl chr 9:95,161,157...95,302,822 		JBrowse link
G Ugt2b17 UDP glucuronosyltransferase family 2 member B17 NOT ISO (PMID:20308471) RGD PMID:20308471 NCBI chr14:22,724,399...22,736,148
Ensembl chr14:22,724,070...22,825,444 		JBrowse link
G Ugt2b7 UDP glucuronosyltransferase family 2 member B7 NOT ISO (PMID:20308471) RGD PMID:20308471 NCBI chr14:22,597,103...22,619,968 JBrowse link
retinol binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide ISO (PMID:10407146) RGD PMID:10407146 NCBI chr 2:243,702,035...243,720,063
Ensembl chr 2:243,700,784...243,740,899 		JBrowse link
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide IDA
ISO
IEA		 (PMID:9228021)
GO_REF:0000107		 RGD
Ensembl		 PMID:9228021, PMID:10829036 GO_REF:0000107, RGD:631904 NCBI chr 2:243,500,540...243,516,865
Ensembl chr 2:243,502,073...243,516,532 		JBrowse link
G Crabp1 cellular retinoic acid binding protein 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:59,344,097...59,352,135
Ensembl chr 8:59,344,083...59,352,132 		JBrowse link
G Crabp2 cellular retinoic acid binding protein 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:187,322,416...187,326,794
Ensembl chr 2:184,882,969...184,883,505 		JBrowse link
G Lrat lecithin retinol acyltransferase IDA RGD PMID:8460936, PMID:9244401, PMID:2253789 RGD:1599831, RGD:1599832, RGD:1599829 NCBI chr 2:181,896,304...181,905,366
Ensembl chr 2:181,896,305...181,905,300 		JBrowse link
G Rbp1 retinol binding protein 1 IDA RGD PMID:19965581, PMID:12850148, PMID:16755609 RGD:6484697, RGD:6893656, RGD:6484735 NCBI chr 8:106,449,321...106,470,842
Ensembl chr 8:106,449,321...106,470,842 		JBrowse link
G Rbp2 retinol binding protein 2 TAS
IDA		 RGD PMID:3029082, PMID:12850148, PMID:19965581 RGD:729693, RGD:6893656, RGD:6484697 NCBI chr 8:106,479,253...106,527,726
Ensembl chr 8:106,503,504...106,527,711 		JBrowse link
G Rbp3 retinol binding protein 3 IDA
IBA		 PMID:21873635 RGD
GO_Central		 PMID:8282025, PMID:21873635 RGD:6893658, RGD:13792537 NCBI chr16:10,277,775...10,286,243
Ensembl chr16:10,277,775...10,286,243 		JBrowse link
G Rbp4 retinol binding protein 4 IDA
IBA
ISO		 PMID:21873635
(MGI:3687059|PMID:12484775)
(PMID:9757135)
PMID:4708098
(PMID:571335)		 RGD PMID:571335 PMID:9757135 PMID:12484775, PMID:9260907, PMID:21873635, PMID:4708098 MGI:3687059, RGD:6484695, RGD:13792537, RGD:11567252 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711 		JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20486
    binding 17290
      lipid binding 798
        isoprenoid binding 40
          retinoid binding 37
            3,4-didehydroretinal binding 0
            retinal binding + 15
            retinoic acid binding 21
            retinol binding + 11
paths to the root