Stra6 (signaling receptor and transporter of retinol STRA6) - Rat Genome Database

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Gene: Stra6 (signaling receptor and transporter of retinol STRA6) Heterocephalus glaber
Analyze
Symbol: Stra6
Name: signaling receptor and transporter of retinol STRA6 (Ensembl:stimulated by retinoic acid 6)
RGD ID: 18904082
Description: ENCODES a protein that exhibits retinal binding (inferred); retinol binding (inferred); retinol transmembrane transporter activity (inferred); INVOLVED IN adrenal gland development (ortholog); alveolar primary septum development (ortholog); artery morphogenesis (ortholog); PARTICIPATES IN retinoic acid metabolic pathway; ASSOCIATED WITH Anophthalmia (ortholog); Bardet-Biedl syndrome (ortholog); Bloom syndrome (ortholog); FOUND IN protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: stimulated by retinoic acid 6 protein homolog; stimulated by retinoic acid gene 6 protein homolog; Stimulated by retinoic acid gene 6 protein-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624781389,481 - 413,728 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624781304,890 - 413,655 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Stra6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624781389,481 - 413,728 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624781304,890 - 413,655 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
STRA6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381574,179,466 - 74,212,259 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1574,179,466 - 74,212,267 (-)EnsemblGRCh38hg38GRCh38
GRCh371574,471,807 - 74,502,046 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361572,258,860 - 72,282,245 (-)NCBINCBI36Build 36hg18NCBI36
Build 341572,258,862 - 72,282,245NCBI
Celera1551,418,988 - 51,448,552 (-)NCBICelera
Cytogenetic Map15q24.1NCBI
HuRef1551,265,478 - 51,295,736 (-)NCBIHuRef
CHM1_11574,590,002 - 74,620,238 (-)NCBICHM1_1
T2T-CHM13v2.01572,045,386 - 72,078,184 (-)NCBIT2T-CHM13v2.0
Stra6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39957,971,076 - 58,061,287 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl957,971,071 - 58,061,279 (+)EnsemblGRCm39 Ensembl
GRCm38958,063,793 - 58,154,004 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl958,063,788 - 58,153,996 (+)EnsemblGRCm38mm10GRCm38
MGSCv37957,976,895 - 58,001,804 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36957,927,486 - 57,952,090 (+)NCBIMGSCv36mm8
Celera955,363,368 - 55,388,212 (+)NCBICelera
Cytogenetic Map9BNCBI
cM Map931.63NCBI
Stra6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8867,444,757 - 67,464,719 (+)NCBIGRCr8
mRatBN7.2858,548,899 - 58,568,861 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl858,549,736 - 58,568,860 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx864,079,448 - 64,099,415 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0862,357,008 - 62,376,974 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0860,221,574 - 60,241,541 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0862,925,364 - 62,944,438 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl862,925,357 - 62,944,437 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0862,701,454 - 62,720,528 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4861,920,772 - 61,939,791 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1861,939,822 - 61,958,845 (+)NCBI
Celera858,013,586 - 58,032,719 (+)NCBICelera
Cytogenetic Map8q24NCBI
Stra6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554503,580,662 - 3,602,600 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554503,579,081 - 3,602,538 (+)NCBIChiLan1.0ChiLan1.0
STRA6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21663,403,177 - 63,433,441 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11567,566,763 - 67,597,027 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01553,117,891 - 53,150,790 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11572,740,868 - 72,773,802 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1572,741,482 - 72,770,876 (-)Ensemblpanpan1.1panPan2
STRA6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13037,331,834 - 37,359,449 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3037,331,832 - 37,353,529 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3037,267,455 - 37,295,072 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03037,538,888 - 37,566,524 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3037,538,924 - 37,560,014 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13037,491,016 - 37,518,679 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03037,516,933 - 37,544,523 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03037,772,499 - 37,800,122 (-)NCBIUU_Cfam_GSD_1.0
Stra6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640115,376,111 - 115,490,544 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647133,224,859 - 33,245,030 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647133,224,174 - 33,245,076 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STRA6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl759,318,011 - 59,347,266 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1759,317,930 - 59,347,274 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2763,936,184 - 63,965,508 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STRA6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1269,275,317 - 9,311,302 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl269,278,303 - 9,311,475 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048132,311,962 - 132,346,794 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004855474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021236950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01058880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01058881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01006584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH171542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000018808   ⟹   ENSHGLP00000018623
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624781389,481 - 413,728 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000018809   ⟹   ENSHGLP00000018624
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624781390,442 - 413,728 (+)Ensembl
RefSeq Acc Id: XM_004855474   ⟹   XP_004855531
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781390,508 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236931   ⟹   XP_021092590
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781304,890 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236932   ⟹   XP_021092591
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781304,890 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236933   ⟹   XP_021092592
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781304,890 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236934   ⟹   XP_021092593
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781304,890 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236935   ⟹   XP_021092594
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781304,890 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236936   ⟹   XP_021092595
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781304,890 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236937   ⟹   XP_021092596
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781304,890 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236938   ⟹   XP_021092597
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781304,890 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236939   ⟹   XP_021092598
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781304,890 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236940   ⟹   XP_021092599
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781304,890 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236941   ⟹   XP_021092600
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781362,368 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236943   ⟹   XP_021092602
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781304,890 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236944   ⟹   XP_021092603
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781304,890 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236945   ⟹   XP_021092604
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781364,892 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236946   ⟹   XP_021092605
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781304,891 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236947   ⟹   XP_021092606
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781392,258 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236948   ⟹   XP_021092607
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781398,853 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236949   ⟹   XP_021092608
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781391,408 - 413,655 (+)NCBI
RefSeq Acc Id: XM_021236950   ⟹   XP_021092609
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624781389,767 - 413,655 (+)NCBI
RefSeq Acc Id: XP_021092593   ⟸   XM_021236934
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R5R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092596   ⟸   XM_021236937
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R5R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092594   ⟸   XM_021236935
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R5R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092597   ⟸   XM_021236938
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R5R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092591   ⟸   XM_021236932
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R5R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092592   ⟸   XM_021236933
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R5R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092602   ⟸   XM_021236943
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R5R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092595   ⟸   XM_021236936
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R5R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092590   ⟸   XM_021236931
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R5R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092599   ⟸   XM_021236940
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R5R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092598   ⟸   XM_021236939
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R5R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092603   ⟸   XM_021236944
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R5R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092605   ⟸   XM_021236946
- Peptide Label: isoform X2
- UniProtKB: G5BRG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092600   ⟸   XM_021236941
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R5R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092604   ⟸   XM_021236945
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R5R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092609   ⟸   XM_021236950
- Peptide Label: isoform X2
- UniProtKB: G5BRG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004855531   ⟸   XM_004855474
- Peptide Label: isoform X2
- UniProtKB: G5BRG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092608   ⟸   XM_021236949
- Peptide Label: isoform X2
- UniProtKB: G5BRG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092606   ⟸   XM_021236947
- Peptide Label: isoform X2
- UniProtKB: G5BRG2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092607   ⟸   XM_021236948
- Peptide Label: isoform X2
- UniProtKB: G5BRG2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000018624   ⟸   ENSHGLT00000018809
Ensembl Acc Id: ENSHGLP00000018623   ⟸   ENSHGLT00000018808


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013329 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000018808 ENTREZGENE
  ENSHGLT00000018809 ENTREZGENE
InterPro STRA6 UniProtKB/TrEMBL
KEGG Report hgl:101704953 UniProtKB/TrEMBL
NCBI Gene Stra6 ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 180 UniProtKB/TrEMBL
  PTHR21444:SF16 UniProtKB/TrEMBL
Pfam RBP_receptor UniProtKB/TrEMBL
UniProt A0AAX6R5R1 ENTREZGENE, UniProtKB/TrEMBL
  G5BRG2 ENTREZGENE, UniProtKB/TrEMBL