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ONTOLOGY REPORT - ANNOTATIONS

Term:snRNA processing
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Accession:GO:0016180 term browser browse the term
Definition:Any process involved in the conversion of a primary small nuclear RNA (snRNA) transcript into a mature snRNA molecule. The primary function of snRNAs is processing pre-messenger RNA in the nucleus. They have also been shown to aid in the regulation of transcription factors (7SK RNA) or RNA polymerase II (B2 RNA), and maintaining the telomeres.
Synonyms:exact_synonym: snRNA maturation;   snRNA production

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snRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fto FTO alpha-ketoglutarate dependent dioxygenase involved_in ISO (PMID:30197295) GO_Central PMID:30197295 NCBI chrNW_004955433:11,424,069...11,834,955
Ensembl chrNW_004955433:11,424,176...11,813,771 		JBrowse link
G Ints1 integrator complex subunit 1 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955460:9,116,650...9,149,470
Ensembl chrNW_004955460:9,116,891...9,143,120 		JBrowse link
G Ints10 integrator complex subunit 10 involved_in ISO (PMID:16239144) HGNC PMID:16239144 NCBI chrNW_004955403:43,519,239...43,546,209
Ensembl chrNW_004955403:43,519,239...43,549,990 		JBrowse link
G Ints11 integrator complex subunit 11 involved_in ISO (PMID:16239144) BHF-UCL PMID:16239144 NCBI chrNW_004955486:9,479,057...9,491,629
Ensembl chrNW_004955486:9,479,057...9,491,629 		JBrowse link
G Ints12 integrator complex subunit 12 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955496:3,564,548...3,580,178
Ensembl chrNW_004955496:3,564,548...3,580,178 		JBrowse link
G Ints2 integrator complex subunit 2 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955451:2,822,081...2,876,117
Ensembl chrNW_004955451:2,822,081...2,876,313 		JBrowse link
G Ints3 integrator complex subunit 3 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955545:352,170...394,751
Ensembl chrNW_004955545:351,872...396,052 		JBrowse link
G Ints4 integrator complex subunit 4 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955414:13,934,830...14,053,648
Ensembl chrNW_004955414:13,934,689...14,056,583 		JBrowse link
G Ints5 integrator complex subunit 5 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955599:551,989...556,341
Ensembl chrNW_004955599:551,078...556,341 		JBrowse link
G Ints6 integrator complex subunit 6 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955431:4,728,011...4,810,236
Ensembl chrNW_004955431:4,728,533...4,809,494 		JBrowse link
G Ints7 integrator complex subunit 7 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955406:5,299,696...5,371,496
Ensembl chrNW_004955406:5,299,697...5,371,896 		JBrowse link
G Ints8 integrator complex subunit 8 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955417:10,975,716...11,027,697
Ensembl chrNW_004955417:10,975,103...11,027,697 		JBrowse link
G Ints9 integrator complex subunit 9 involved_in ISO (PMID:16239144) HGNC-UCL PMID:16239144 NCBI chrNW_004955403:51,111,418...51,199,430
Ensembl chrNW_004955403:51,109,751...51,199,136 		JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific involved_in ISO (PMID:16790842) UniProt PMID:16790842 NCBI chrNW_004955599:596,565...606,498
Ensembl chrNW_004955599:596,650...606,486 		JBrowse link
snRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Toe1 target of EGR1, exonuclease involved_in ISO (PMID:28092684) UniProt PMID:28092684 NCBI chrNW_004955464:12,924,185...12,927,567
Ensembl chrNW_004955464:12,924,191...12,927,567 		JBrowse link
G Usb1 U6 snRNA biogenesis phosphodiesterase 1 involved_in ISO (PMID:26213367) UniProt PMID:26213367 NCBI chrNW_004955433:15,572,884...15,580,108
Ensembl chrNW_004955433:15,572,881...15,579,509 		JBrowse link
U2 snRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ints1 integrator complex subunit 1 acts_upstream_of_or_within ISO (PMID:17544522) MGI PMID:17544522 NCBI chrNW_004955460:9,116,650...9,149,470
Ensembl chrNW_004955460:9,116,891...9,143,120 		JBrowse link
U6 snRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific involved_in ISO (PMID:28589955) UniProt PMID:28589955 NCBI chrNW_004955599:596,565...606,498
Ensembl chrNW_004955599:596,650...606,486 		JBrowse link
G Usb1 U6 snRNA biogenesis phosphodiesterase 1 involved_in ISO (PMID:23190533)
(PMID:22899009), (PMID:23022480), (PMID:26213367)		 UniProt PMID:22899009 PMID:23022480 PMID:23190533 PMID:26213367 NCBI chrNW_004955433:15,572,884...15,580,108
Ensembl chrNW_004955433:15,572,881...15,579,509 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12362
    metabolic process 7488
      primary metabolic process 6455
        RNA processing 583
          snRNA processing 16
            snRNA 2,2,7-trimethylguanosine (TMG) capping 0
            snRNA 3'-end processing + 4
Path 2
Term Annotations click to browse term
  biological_process 12362
    cellular process 11459
      cellular metabolic process 6296
        cellular biosynthetic process 5022
          macromolecule biosynthetic process 4619
            nucleic acid biosynthetic process 2838
              RNA biosynthetic process 2744
                RNA processing 583
                  snRNA processing 16
                    snRNA 2,2,7-trimethylguanosine (TMG) capping 0
                    snRNA 3'-end processing + 4
paths to the root