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ONTOLOGY REPORT - ANNOTATIONS

Term:spermidine metabolic process
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Accession:GO:0008216 term browser browse the term
Definition:The chemical reactions and pathways involving spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
Synonyms:exact_synonym: spermidine metabolism


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spermidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHPS deoxyhypusine synthase involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr20:49,435,956...49,439,493
Ensembl chr20:49,435,844...49,439,479 		JBrowse link
positive regulation of spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAOX polyamine oxidase involved_in IEA Ensembl GO_REF:0000107
spermidine acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SAT1 spermidine/spermine N1-acetyltransferase 1 involved_in ISO
IEA
IBA		 RGD
Ensembl
GO_Central		 PMID:15541750 GO_REF:0000033 GO_REF:0000107 RGD:7244190 NCBI chr  X:19,461,945...19,464,209
Ensembl chr  X:19,463,109...19,464,116 		JBrowse link
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 NOT|involved_in ISO (PMID:15283699)
(PMID:12803540)		 UniProt PMID:12803540 PMID:15283699 NCBI chr 5:32,534,302...32,536,022
Ensembl chr 5:32,534,310...32,535,846 		JBrowse link
spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 involved_in ISO
IBA
IEA		 RGD
GO_Central
UniProt
InterPro		 PMID:1415709 PMID:10430362 PMID:10712236 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 RGD:1578320 RGD:7242911 RGD:7242912 NCBI chr12:67,432,871...67,453,791
Ensembl chr12:67,448,141...67,451,696 		JBrowse link
G SRM spermidine synthase involved_in ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:8494549 PMID:12843627 PMID:16931179 GO_REF:0000033 GO_REF:0000107 RGD:1359042 RGD:7242920 RGD:7242928 NCBI chr 2:84,968,833...84,973,111
Ensembl chr 2:84,967,570...84,973,087 		JBrowse link
spermidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHPS deoxyhypusine synthase ISO RGD PMID:7721768 RGD:2316236 NCBI chr20:49,435,956...49,439,493
Ensembl chr20:49,435,844...49,439,479 		JBrowse link
G PAOX polyamine oxidase involved_in ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:7560898 GO_REF:0000033 GO_REF:0000107 RGD:7244191
spermidine deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC10 histone deacetylase 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:16,996,307...17,001,365
Ensembl chr10:16,995,762...17,078,262 		JBrowse link
G HDAC6 histone deacetylase 6 NOT|involved_in ISO (PMID:28516954) UniProt PMID:28516954 NCBI chr  X:42,004,268...42,024,726
Ensembl chr  X:42,004,591...42,024,427 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 22121
    cellular process 21652
      metabolic process 15394
        amine metabolic process 118
          biogenic amine metabolic process 106
            polyamine metabolic process 17
              spermidine metabolic process 8
                spermidine acetylation 2
                spermidine biosynthetic process + 3
                spermidine catabolic process 2
                spermidine deacetylation 2
paths to the root