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ONTOLOGY REPORT - ANNOTATIONS

Term:sno(s)RNA-containing ribonucleoprotein complex
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Accession:GO:0005732 term browser browse the term
Definition:A ribonucleoprotein complex that contains an RNA molecule of the snoRNA family and associated proteins. Many are involved in a step of processing of rRNA molecules: cleavage, 2'-O-methylation, or pseudouridylation, but other RNA types can be targets as well. The majority fall into one of two classes, box C/D type or box H/ACA type, which are conserved across eukaryotes and archaea. Other members include the telomerase RNA and the ribonuclease MRP RNA.
Comment:Note that 'nucleolar' in the name acronym 'snoRNA' is part of the RNA family designation 'small nucleolar', and does not reflect the location of the complex. Both box C/D type and box H/ACA RNAs are found in Archaea (where they are referred to as sRNAs) as well as in Eukaryota. In eukaryotes, box H/ACA RNAs are found in both nucleolar-localized snoRNP complexes and in Cajal body-localized scaRNP complexes.
Synonyms:narrow_synonym: sRNP;   small nucleolar ribonucleoprotein;   small nucleolar ribonucleoprotein complex;   small ribonucleoprotein;   small ribonucleoprotein protein complex;   snoRNP


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sno(s)RNA-containing ribonucleoprotein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G INS insulin part_of ISO (PMID:12488434) MGI PMID:12488434 NCBI chr11:2,200,785...2,202,579
Ensembl chr11:2,218,117...2,231,666 		JBrowse link
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 4:138,514,194...138,528,575
Ensembl chr 4:150,171,648...150,185,947 		JBrowse link
G MPHOSPH10 M-phase phosphoprotein 10 part_of IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chr2A:71,176,704...71,196,443
Ensembl chr2A:72,677,428...72,697,592 		JBrowse link
G NAF1 nuclear assembly factor 1 ribonucleoprotein part_of IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:155,383,245...155,425,479
Ensembl chr 4:167,157,770...167,214,065 		JBrowse link
G NOP56 NOP56 ribonucleoprotein part_of IEA Ensembl GO_REF:0000107 NCBI chr20:2,760,689...2,766,596
Ensembl chr20:2,523,619...2,529,509 		JBrowse link
G NOP58 NOP58 ribonucleoprotein part_of IEA Ensembl GO_REF:0000107 NCBI chr2B:89,520,961...89,558,794
Ensembl chr2B:207,674,654...207,707,763 		JBrowse link
box C/D methylation guide snoRNP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBL fibrillarin part_of IEA TreeGrafter GO_REF:0000118 NCBI chr19:36,866,329...36,878,293
Ensembl chr19:45,413,978...45,425,930 		JBrowse link
G LOC117978871 rRNA 2'-O-methyltransferase fibrillarin-like part_of IEA TreeGrafter GO_REF:0000118 Ensembl chr19:45,413,978...45,425,930 JBrowse link
G NOLC1 nucleolar and coiled-body phosphoprotein 1 ISO RGD PMID:10679015 RGD:633515 NCBI chr10:98,756,307...98,767,917
Ensembl chr10:102,223,956...102,233,760 		JBrowse link
G NOP56 NOP56 ribonucleoprotein part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr20:2,760,689...2,766,596
Ensembl chr20:2,523,619...2,529,509 		JBrowse link
G NOP58 NOP58 ribonucleoprotein part_of IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:89,520,961...89,558,794
Ensembl chr2B:207,674,654...207,707,763 		JBrowse link
G RRP9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein part_of IEA Ensembl GO_REF:0000107 NCBI chr 3:51,874,829...51,883,339
Ensembl chr 3:53,103,621...53,112,127 		JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:22,567,285...22,582,257
Ensembl chr22:40,653,338...40,669,706 		JBrowse link
box H/ACA snoRNP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKC1 dyskerin pseudouridine synthase 1 part_of ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:10679015 PMID:12446766 GO_REF:0000107 GO_REF:0000118 RGD:633420 RGD:633515 NCBI chr  X:144,243,493...144,257,419
Ensembl chr  X:154,084,412...154,098,475 		JBrowse link
G GAR1 GAR1 ribonucleoprotein part_of ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:12446766 GO_REF:0000107 GO_REF:0000118 RGD:633420 NCBI chr 4:102,311,275...102,320,579
Ensembl chr 4:112,879,223...112,887,828 		JBrowse link
G NHP2 NHP2 ribonucleoprotein part_of ISO
IEA		 RGD
TreeGrafter
UniProt
Ensembl		 PMID:12446766 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 RGD:633420 NCBI chr 5:173,308,560...173,313,046
Ensembl chr 5:180,566,008...180,570,502 		JBrowse link
G NOLC1 nucleolar and coiled-body phosphoprotein 1 ISO RGD PMID:10679015 RGD:633515 NCBI chr10:98,756,307...98,767,917
Ensembl chr10:102,223,956...102,233,760 		JBrowse link
G NOP10 NOP10 ribonucleoprotein part_of ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:12446766 GO_REF:0000107 GO_REF:0000118 RGD:633420 NCBI chr15:12,850,708...12,852,171
Ensembl chr15:31,684,833...31,686,305 		JBrowse link
box H/ACA telomerase RNP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKC1 dyskerin pseudouridine synthase 1 part_of IEA Ensembl GO_REF:0000107 NCBI chr  X:144,243,493...144,257,419
Ensembl chr  X:154,084,412...154,098,475 		JBrowse link
G GAR1 GAR1 ribonucleoprotein part_of IEA Ensembl GO_REF:0000107 NCBI chr 4:102,311,275...102,320,579
Ensembl chr 4:112,879,223...112,887,828 		JBrowse link
G NHP2 NHP2 ribonucleoprotein part_of IEA Ensembl GO_REF:0000107 NCBI chr 5:173,308,560...173,313,046
Ensembl chr 5:180,566,008...180,570,502 		JBrowse link
G NOP10 NOP10 ribonucleoprotein part_of IEA Ensembl GO_REF:0000107 NCBI chr15:12,850,708...12,852,171
Ensembl chr15:31,684,833...31,686,305 		JBrowse link
ribonuclease MRP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POP1 POP1 homolog, ribonuclease P/MRP subunit part_of IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:94,754,028...94,796,374
Ensembl chr 8:96,944,588...96,979,328 		JBrowse link
G POP4 POP4 homolog, ribonuclease P/MRP subunit part_of IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr19:26,535,196...26,544,747
Ensembl chr19:35,296,084...35,307,002 		JBrowse link
G POP5 POP5 homolog, ribonuclease P/MRP subunit part_of IEA Ensembl GO_REF:0000107 NCBI chr12:118,162,497...118,165,472
Ensembl chr12:121,535,005...121,537,350 		JBrowse link
G POP7 POP7 homolog, ribonuclease P/MRP subunit part_of IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr 7:92,722,839...92,734,708
Ensembl chr 7:106,134,766...106,135,188 		JBrowse link
G RPP25 ribonuclease P and MRP subunit p25 part_of IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:53,895,547...53,897,922
Ensembl chr15:73,513,375...73,513,974 		JBrowse link
G RPP25L ribonuclease P/MRP subunit p25 like part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 9:34,447,073...34,448,762
Ensembl chr 9:35,256,822...35,257,313 		JBrowse link
G RPP30 ribonuclease P/MRP subunit p30 part_of IEA Ensembl GO_REF:0000107 NCBI chr10:87,611,699...87,646,239
Ensembl chr10:91,138,993...91,170,517 		JBrowse link
G RPP38 ribonuclease P/MRP subunit p38 part_of IEA InterPro GO_REF:0000002 NCBI chr10:15,413,026...15,420,170
Ensembl chr10:15,700,027...15,703,046 		JBrowse link
G RPP40 ribonuclease P/MRP subunit p40 part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 6:4,828,155...4,838,680
Ensembl chr 6:5,015,953...5,024,540 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 17180
    protein-containing complex 5905
      ribonucleoprotein complex 950
        sno(s)RNA-containing ribonucleoprotein complex 24
          box C/D RNP complex + 7
          box H/ACA RNP complex + 5
          ribonuclease MRP complex 9
paths to the root