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ONTOLOGY REPORT - ANNOTATIONS

Term:U4 snRNP
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Accession:GO:0005687 term browser browse the term
Definition:A ribonucleoprotein complex that contains small nuclear RNA U4, a heptameric ring of Sm proteins, as well as several proteins that are unique to the U4 snRNP, most of which remain associated with the U4 snRNA both while the U4 snRNP is free or assembled into the U4/U6 snRNP or into a series of spliceosomal complexes.


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U4 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042226.1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  X:144,806,986...144,812,552 JBrowse link
G Ddx39b DExD-box helicase 39B part_of ISO
IEA		 (PMID:18593880)
GO_REF:0000107		 RGD
Ensembl		 PMID:18593880 GO_REF:0000107 NCBI chr20:3,547,702...3,585,064
Ensembl chr20:3,572,056...3,584,996 		JBrowse link
G ENSRNOG00000064062 part_of IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr19:33,454,456...33,455,388 JBrowse link
G Prpf31 pre-mRNA processing factor 31 part_of ISO
IBA		 (PMID:17412961)
GO_REF:0000033		 RGD
GO_Central		 PMID:17412961 GO_REF:0000033 NCBI chr 1:65,575,887...65,587,561
Ensembl chr 1:65,575,887...65,587,873 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 part_of ISS
ISO
IBA		 GO_REF:0000024
(PMID:21516107)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:21516107 GO_REF:0000024 GO_REF:0000033 NCBI chr 3:117,369,816...117,379,344
Ensembl chr 3:117,370,100...117,379,339 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of ISO
IBA		 (PMID:21516107)
GO_REF:0000033		 RGD
GO_Central		 PMID:21516107 GO_REF:0000033 NCBI chr18:1,696,838...1,707,400
Ensembl chr18:1,696,852...1,708,256 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide part_of ISO (PMID:21516107) RGD PMID:21516107 NCBI chr 1:78,798,377...78,801,227
Ensembl chr 1:78,798,377...78,803,351 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of ISO
IBA		 (PMID:21516107)
GO_REF:0000033		 RGD
GO_Central		 PMID:21516107 GO_REF:0000033 NCBI chr20:13,130,112...13,145,947
Ensembl chr20:13,130,119...13,145,978 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of ISO
IBA		 (PMID:21516107)
GO_REF:0000033		 RGD
GO_Central		 PMID:21516107 GO_REF:0000033 NCBI chr13:45,050,986...45,057,231
Ensembl chr13:45,050,986...45,057,310
Ensembl chr 8:45,050,986...45,057,310 		JBrowse link
G Snrpepl2 small nuclear ribonucleoprotein polypeptide E like 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:133,709,656...133,710,137
Ensembl chr 1:133,709,797...133,710,075 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of ISO (PMID:21516107) RGD PMID:21516107 NCBI chr 7:28,130,427...28,137,129
Ensembl chr 7:28,130,427...28,137,129 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of ISO
IBA		 (PMID:21516107)
GO_REF:0000033		 RGD
GO_Central		 PMID:21516107 GO_REF:0000033 NCBI chr 4:118,812,278...118,819,827
Ensembl chr 4:118,812,252...118,819,826 		JBrowse link
G Snrpgl1 small nuclear ribonucleoprotein polypeptide G like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:87,982,629...87,983,056
Ensembl chr 1:87,982,626...87,983,118
Ensembl chr 4:87,982,626...87,983,118 		JBrowse link
G Snrpn small nuclear ribonucleoprotein polypeptide N part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:111,101,327...111,123,400
Ensembl chr 1:111,101,329...111,123,634 		JBrowse link
G Zfp341 zinc finger protein 341 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:143,122,699...143,156,250
Ensembl chr 3:143,119,093...143,156,249 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20827
    protein-containing complex 6555
      nuclear protein-containing complex 1275
        small nuclear ribonucleoprotein complex 84
          spliceosomal snRNP complex 76
            U4 snRNP 15
Path 2
Term Annotations click to browse term
  cellular_component 20827
    cellular anatomical structure 20627
      intracellular anatomical structure 15182
        intracellular organelle 13564
          intracellular membrane-bounded organelle 12005
            nucleus 7451
              nuclear protein-containing complex 1275
                small nuclear ribonucleoprotein complex 84
                  spliceosomal snRNP complex 76
                    U4 snRNP 15
paths to the root