Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:chromatin silencing complex
go back to main search page
Accession:GO:0005677 term browser browse the term
Definition:Any protein complex that mediates changes in chromatin structure that result in transcriptional silencing.


show annotations for term's descendants           Sort by:
chromatin silencing complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bahd1 bromo adjacent homology domain containing 1 part_of ISO
IBA		 (PMID:19666599)
GO_REF:0000033		 RGD
GO_Central		 PMID:19666599 GO_REF:0000033 NCBI chr 3:105,891,207...105,914,414
Ensembl chr 3:105,892,478...105,914,410 		JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain, 2A part_of ISO (MGI:3587127|PMID:16085498), (MGI:3852588|PMID:19578370) RGD PMID:16085498 PMID:19578370 MGI:3587127 MGI:3852588 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659 		JBrowse link
G Eed embryonic ectoderm development part_of ISO (PMID:26658965) RGD PMID:26658965 NCBI chr 1:143,867,875...143,895,008
Ensembl chr 1:143,867,875...143,894,974 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit part_of ISO (PMID:26658965) RGD PMID:26658965 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Rrp8 ribosomal RNA processing 8 part_of ISO
IBA
ISS		 (PMID:18485871)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:18485871 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:160,081,092...160,088,709
Ensembl chr 1:160,084,295...160,089,331 		JBrowse link
G Sirt1 sirtuin 1 part_of ISO (PMID:18485871) RGD PMID:18485871 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 part_of ISO (MGI:3587127|PMID:16085498) RGD PMID:16085498 MGI:3587127 NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594 		JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase part_of ISO (PMID:18485871)
(MGI:3688024|PMID:11788710)		 RGD PMID:11788710 PMID:18485871 MGI:3688024 NCBI chr  X:14,421,028...14,433,993
Ensembl chr  X:14,421,109...14,433,982 		JBrowse link
G Suv39h1-ps1 SUV39H1 histone lysine methyltransferase, pseudogene 1 part_of ISO (PMID:18485871)
(MGI:3688024|PMID:11788710)		 RGD PMID:11788710 PMID:18485871 MGI:3688024 NCBI chr  X:141,792,589...141,795,257 JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit part_of ISO (PMID:26658965) RGD PMID:26658965 NCBI chr10:64,967,035...65,012,916
Ensembl chr10:64,966,967...65,012,738 		JBrowse link
G Yy1 YY1 transcription factor part_of ISO (PMID:26658965) RGD PMID:26658965 NCBI chr 6:127,706,739...127,736,499
Ensembl chr 6:127,707,596...127,732,747 		JBrowse link
chromatin lock complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbx3 chromobox 3 located_in ISO (PMID:17540172) RGD PMID:17540172 NCBI chr 4:80,545,450...80,559,284
Ensembl chr 4:80,546,010...80,559,283 		JBrowse link
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 located_in ISO (PMID:17540172) RGD PMID:17540172 NCBI chr 3:151,597,903...151,633,657
Ensembl chr 3:151,602,980...151,631,233 		JBrowse link
G Rb1 RB transcriptional corepressor 1 located_in
part_of		 ISO
IEA		 (PMID:17540172)
GO_REF:0000107		 RGD
Ensembl		 PMID:17540172 GO_REF:0000107 NCBI chr15:48,371,295...48,502,473
Ensembl chr15:48,371,296...48,502,302 		JBrowse link
eNoSc complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rrp8 ribosomal RNA processing 8 located_in
part_of		 ISO
IEA		 (PMID:18485871)
GO_REF:0000107		 RGD
Ensembl		 PMID:18485871 GO_REF:0000107 NCBI chr 1:160,081,092...160,088,709
Ensembl chr 1:160,084,295...160,089,331 		JBrowse link
G Sirt1 sirtuin 1 located_in ISO (PMID:18485871) RGD PMID:18485871 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Suv39h1 SUV39H1 histone lysine methyltransferase located_in ISO (PMID:18485871) RGD PMID:18485871 NCBI chr  X:14,421,028...14,433,993
Ensembl chr  X:14,421,109...14,433,982 		JBrowse link
G Suv39h1-ps1 SUV39H1 histone lysine methyltransferase, pseudogene 1 located_in ISO (PMID:18485871) RGD PMID:18485871 NCBI chr  X:141,792,589...141,795,257 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20624
    protein-containing complex 6602
      nuclear protein-containing complex 1276
        chromatin silencing complex 14
          RENT complex 0
          chromatin lock complex 3
          eNoSc complex 4
Path 2
Term Annotations click to browse term
  cellular_component 20624
    cellular anatomical entity 20386
      organelle 13799
        membrane-bounded organelle 12396
          intracellular membrane-bounded organelle 11845
            nucleus 7395
              nuclear protein-containing complex 1276
                chromatin silencing complex 14
                  RENT complex 0
                  chromatin lock complex 3
                  eNoSc complex 4
paths to the root