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ONTOLOGY REPORT - ANNOTATIONS

Term:lipopolysaccharide binding
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Accession:GO:0001530 term browser browse the term
Definition:Binding to a lipopolysaccharide.
Synonyms:exact_synonym: LPS binding
 broad_synonym: endotoxin binding

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lipopolysaccharide binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrb1 adhesion G protein-coupled receptor B1 enables ISO (MGI:4939876|PMID:21245295) UniProt PMID:21245295 MGI:4939876 NCBI chrNW_004624735:14,049,621...14,126,287
Ensembl chrNW_004624735:14,050,213...14,113,534 		JBrowse link
G Bpi bactericidal permeability increasing protein enables ISO
IEA		 RGD
TreeGrafter		 PMID:15009116 GO_REF:0000118 RGD:1303979 NCBI chrNW_004624842:1,339,309...1,363,265
Ensembl chrNW_004624842:1,339,603...1,360,097 		JBrowse link
G Bpifa2 BPI fold containing family A member 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624842:6,135,792...6,142,168 JBrowse link
G Camp cathelicidin antimicrobial peptide enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:73,429,893...73,431,104 JBrowse link
G Casp4 caspase 4 enables ISO (MGI:7428529|PMID:25119034), (MGI:7463870|PMID:37001519)
(PMID:25119034), (PMID:37993712)		 UniProt PMID:25119034 PMID:37001519 PMID:37993712 MGI:7428529 MGI:7463870 NCBI chrNW_004624918:145,661...187,006 JBrowse link
G Cd14 CD14 molecule enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624743:33,372,023...33,374,438
Ensembl chrNW_004624743:33,367,898...33,373,922 		JBrowse link
G Cd6 CD6 molecule enables ISO (PMID:17601777) UniProt PMID:17601777 NCBI chrNW_004624926:325,327...333,405
Ensembl chrNW_004624926:324,828...333,246 		JBrowse link
G Defb136 defensin beta 136 enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624758:25,439,976...25,440,556
Ensembl chrNW_004624758:25,439,976...25,440,556 		JBrowse link
G Dmbt1 deleted in malignant brain tumors 1 enables ISO (PMID:19189310) UniProt PMID:19189310 NCBI chrNW_004624737:24,135,083...24,164,935 JBrowse link
G Drosha drosha ribonuclease III enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:22,949,225...23,082,263
Ensembl chrNW_004624759:22,949,150...23,082,487 		JBrowse link
G F2 coagulation factor II, thrombin enables ISO (PMID:20421939) UniProt PMID:20421939 NCBI chrNW_004624767:1,876,974...1,887,720
Ensembl chrNW_004624767:1,877,024...1,887,958 		JBrowse link
G Hmgb1 high mobility group box 1 enables ISO (PMID:21660935) UniProt PMID:21660935 NCBI chrNW_004624776:7,858,400...7,862,716
Ensembl chrNW_004624776:7,793,259...7,863,184 		JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 enables ISO (MGI:3708392|PMID:17164250)
(PMID:17164250)		 BHF-UCL PMID:17164250 MGI:3708392 NCBI chrNW_004624889:2,736,727...2,746,333 JBrowse link
G Lbp lipopolysaccharide binding protein enables ISO
IEA		 RGD
TreeGrafter
UniProt		 PMID:22580761 GO_REF:0000104 GO_REF:0000118 RGD:9685189 NCBI chrNW_004624842:1,306,299...1,332,269
Ensembl chrNW_004624842:1,301,831...1,332,346 		JBrowse link
G LOC101708924 15 kDa protein B-like enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:74,017,915...74,020,601 JBrowse link
G Ltf lactotransferrin enables ISO (PMID:15155221)
(PMID:9596699)		 UniProt PMID:9596699 PMID:15155221 NCBI chrNW_004624730:74,636,554...74,656,817
Ensembl chrNW_004624730:74,636,522...74,656,886 		JBrowse link
G Ly96 lymphocyte antigen 96 enables IEA InterPro GO_REF:0000002 NCBI chrNW_004624744:17,209,285...17,241,347
Ensembl chrNW_004624744:17,208,990...17,241,347 		JBrowse link
G Ninj1 ninjurin 1 enables ISO (MGI:6695680|PMID:26677008)
(PMID:26677008)		 UniProt PMID:26677008 MGI:6695680 NCBI chrNW_004624868:3,430,539...3,442,205
Ensembl chrNW_004624868:3,430,209...3,445,542 		JBrowse link
G Nlrp6 NLR family pyrin domain containing 6 enables ISO (PMID:31932628) UniProt PMID:31932628 NCBI chrNW_004624766:22,143,405...22,150,903 JBrowse link
G Nr4a1 nuclear receptor subfamily 4 group A member 1 enables ISO (MGI:7463870|PMID:37001519) UniProt PMID:37001519 MGI:7463870 NCBI chrNW_004624816:271,345...288,265
Ensembl chrNW_004624816:267,303...293,227 		JBrowse link
G P2rx7 purinergic receptor P2X 7 enables ISO (PMID:11489964) MGI PMID:11489964 NCBI chrNW_004624747:21,725,813...21,768,123
Ensembl chrNW_004624747:21,725,395...21,759,453 		JBrowse link
G Psma1 proteasome 20S subunit alpha 1 enables ISO (MGI:4419084|PMID:12874245) UniProt PMID:12874245 MGI:4419084 NCBI chrNW_004624766:6,380,057...6,392,408
Ensembl chrNW_004624766:6,380,060...6,392,373 		JBrowse link
G Psmb4 proteasome 20S subunit beta 4 enables ISO (MGI:4419084|PMID:12874245) UniProt PMID:12874245 MGI:4419084 NCBI chrNW_004624772:19,124,327...19,126,731
Ensembl chrNW_004624772:19,124,386...19,126,627 		JBrowse link
G Ptafr platelet activating factor receptor enables IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:11,996,454...12,025,751
Ensembl chrNW_004624764:11,998,657...11,999,685 		JBrowse link
G Rnase7 ribonuclease A family member 7 enables ISO (PMID:20180804) UniProt PMID:20180804 NCBI chrNW_004624825:7,034,523...7,036,967
Ensembl chrNW_004624825:7,036,229...7,036,702 		JBrowse link
G Scarb1 scavenger receptor class B member 1 enables ISO (PMID:12651854) BHF-UCL PMID:12651854 NCBI chrNW_004624747:23,970,782...24,010,683
Ensembl chrNW_004624747:23,973,648...24,010,820 		JBrowse link
G Selp selectin P enables ISO (PMID:16514062) BHF-UCL PMID:16514062 NCBI chrNW_004624826:7,510,039...7,544,332
Ensembl chrNW_004624826:7,511,646...7,537,924 		JBrowse link
G Sftpd surfactant protein D ISO RGD PMID:18092821 RGD:4143524 NCBI chrNW_004624841:6,917,067...6,938,594
Ensembl chrNW_004624841:6,916,849...6,936,077 		JBrowse link
G Spon2 spondin 2 enables ISO (PMID:14691481) MGI PMID:14691481 NCBI chrNW_004624755:26,045,617...26,049,951
Ensembl chrNW_004624755:26,045,493...26,053,476 		JBrowse link
G Tlr2 toll like receptor 2 enables ISO (PMID:11274165) UniProt PMID:11274165 NCBI chrNW_004624858:4,931,820...4,984,175
Ensembl chrNW_004624858:4,979,485...4,981,833 		JBrowse link
G Tlr4 toll like receptor 4 enables ISO
IEA		 E. coli K12 LPS RGD
TreeGrafter
Ensembl		 PMID:16973131 GO_REF:0000107 GO_REF:0000118 RGD:1643119 NCBI chrNW_004624760:17,596,516...17,608,955
Ensembl chrNW_004624760:17,598,630...17,609,120 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 enables ISO (MGI:5572888|PMID:12847223), (PMID:19079182) BHF-UCL PMID:12847223 PMID:19079182 MGI:5572888 NCBI chrNW_004624754:17,643,397...17,649,255
Ensembl chrNW_004624754:17,643,363...17,648,231 		JBrowse link
G Tril TLR4 interactor with leucine rich repeats enables ISO (PMID:19710467) UniProt PMID:19710467 NCBI chrNW_004624739:1,663,916...1,668,258
Ensembl chrNW_004624739:1,664,432...1,666,867 		JBrowse link
G Zranb2 zinc finger RANBP2-type containing 2 enables IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624742:25,152,876...25,167,209
Ensembl chrNW_004624742:25,152,304...25,167,209 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 16258
    binding 14754
      carbohydrate derivative binding 1859
        lipopolysaccharide binding 34
paths to the root