Spon2 (spondin 2) - Rat Genome Database

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Gene: Spon2 (spondin 2) Heterocephalus glaber
Analyze
Symbol: Spon2
Name: spondin 2
RGD ID: 18906283
Description: ENCODES a protein that exhibits antigen binding (ortholog); lipopolysaccharide binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN cell adhesion (ortholog); cellular response to lipopolysaccharide (ortholog); cellular response to platelet-derived growth factor stimulus (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Carotid Artery Injuries (ortholog); cherubism (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spondin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475526,045,493 - 26,053,476 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475526,045,617 - 26,049,951 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Spon2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475526,045,493 - 26,053,476 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475526,045,617 - 26,049,951 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SPON2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3841,166,932 - 1,208,844 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl41,166,932 - 1,208,962 (-)EnsemblGRCh38hg38GRCh38
GRCh3741,160,720 - 1,202,632 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3641,150,723 - 1,156,597 (-)NCBINCBI36Build 36hg18NCBI36
Build 3441,150,552 - 1,156,427NCBI
Celera41,093,221 - 1,099,481 (-)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef41,129,322 - 1,171,336 (-)NCBIHuRef
CHM1_141,160,505 - 1,202,404 (-)NCBICHM1_1
T2T-CHM13v2.041,165,604 - 1,208,039 (-)NCBIT2T-CHM13v2.0
Spon2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39533,370,862 - 33,375,596 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl533,355,528 - 33,375,799 (-)EnsemblGRCm39 Ensembl
GRCm38533,213,518 - 33,218,254 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl533,198,184 - 33,218,455 (-)EnsemblGRCm38mm10GRCm38
MGSCv37533,556,167 - 33,560,887 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36533,530,375 - 33,535,040 (-)NCBIMGSCv36mm8
Celera530,692,605 - 30,697,322 (-)NCBICelera
Cytogenetic Map5B1NCBI
cM Map517.5NCBI
Spon2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81481,713,070 - 81,742,510 (+)NCBIGRCr8
mRatBN7.21477,505,695 - 77,518,001 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1477,511,901 - 77,517,996 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1481,954,278 - 81,960,081 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01483,194,828 - 83,200,631 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01479,640,141 - 79,645,944 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01482,815,158 - 82,824,529 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1482,818,663 - 82,824,599 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01483,501,025 - 83,510,376 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.11482,975,275 - 82,978,160 (-)NCBI
Celera1476,428,066 - 76,433,860 (+)NCBICelera
Cytogenetic Map14q21NCBI
Spon2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955514596,829 - 604,051 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955514598,840 - 603,390 (-)NCBIChiLan1.0ChiLan1.0
SPON2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v231,497,529 - 1,521,340 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan141,458,112 - 1,469,560 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v041,309,473 - 1,351,529 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.141,195,307 - 1,201,168 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl41,195,848 - 1,200,400 (-)Ensemblpanpan1.1panPan2
SPON2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1391,411,245 - 91,421,245 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha393,879,686 - 93,886,426 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0392,411,007 - 92,417,759 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl392,411,007 - 92,417,965 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1391,584,382 - 91,591,120 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0391,637,257 - 91,643,961 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0392,021,312 - 92,028,059 (+)NCBIUU_Cfam_GSD_1.0
Spon2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528568,385,733 - 68,391,985 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647722,087,394 - 22,093,723 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647722,087,450 - 22,093,677 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPON2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8447,180 - 450,538 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18447,176 - 450,829 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SPON2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12747,609,170 - 47,615,507 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2747,609,922 - 47,615,496 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660513,986,077 - 3,992,451 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000011758   ⟹   ENSHGLP00000011630
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475526,045,493 - 26,053,476 (+)Ensembl
RefSeq Acc Id: XM_004847451   ⟹   XP_004847508
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475526,045,951 - 26,049,951 (+)NCBI
RefSeq Acc Id: XM_004847452   ⟹   XP_004847509
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475526,045,963 - 26,049,951 (+)NCBI
RefSeq Acc Id: XM_004847453   ⟹   XP_004847510
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475526,045,617 - 26,049,951 (+)NCBI
RefSeq Acc Id: XM_021260439   ⟹   XP_021116098
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475526,045,951 - 26,049,951 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004847508 (Get FASTA)   NCBI Sequence Viewer  
  XP_004847509 (Get FASTA)   NCBI Sequence Viewer  
  XP_004847510 (Get FASTA)   NCBI Sequence Viewer  
  XP_021116098 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000011630
  ENSHGLP00000056793
  ENSHGLP00100035822
GenBank Protein JAO03459 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004847510   ⟸   XM_004847453
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JHG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021116098   ⟸   XM_021260439
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004847508   ⟸   XM_004847451
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JHG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004847509   ⟸   XM_004847452
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JHG1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000011630   ⟸   ENSHGLT00000011758


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008343 Ensembl, ENTREZGENE
  ENSHGLG00000042456 UniProtKB/TrEMBL
  ENSHGLG00100051892 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000011758 ENTREZGENE
  ENSHGLT00000060921 UniProtKB/TrEMBL
  ENSHGLT00100053808 UniProtKB/TrEMBL
Gene3D-CATH 2.20.100.10 UniProtKB/TrEMBL
  2.60.40.2130 UniProtKB/TrEMBL
InterPro Spondin/Thrombospondin_T1 UniProtKB/TrEMBL
  Spondin_N UniProtKB/TrEMBL
  Spondin_N_sf UniProtKB/TrEMBL
  TSP1_rpt UniProtKB/TrEMBL
  TSP1_rpt_sf UniProtKB/TrEMBL
  TSP1_spondin_dom UniProtKB/TrEMBL
KEGG Report hgl:101722529 UniProtKB/TrEMBL
NCBI Gene Spon2 ENTREZGENE
PANTHER SPONDIN UniProtKB/TrEMBL
  TSP1_SPONDIN DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam Spond_N UniProtKB/TrEMBL
  TSP1_spondin UniProtKB/TrEMBL
PROSITE SPONDIN UniProtKB/TrEMBL
  TSP1 UniProtKB/TrEMBL
SMART TSP1 UniProtKB/TrEMBL
Superfamily-SCOP SSF82895 UniProtKB/TrEMBL
UniProt A0A0P6JHG1 ENTREZGENE, UniProtKB/TrEMBL