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childhood kidney cancer - Ontology Report - Rat Genome Database

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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:childhood kidney cancer
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Accession:DOID:3675 term browser browse the term
Synonyms:exact_synonym: pediatric renal tumor
 primary_id: RDO:9005107
 xref: ICD-O:M8000/3;   NCI:C6563
For additional species annotation, visit the Alliance of Genome Resources.

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show annotations for term's descendants           Sort by:
atypical teratoid rhabdoid tumor term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atrx ATRX, chromatin remodeler ISO ClinVar Annotator: match by term: Atypical teratoid/rhabdoid tumor ClinVar PMID:7697714 PMID:8968741 PMID:18414213 PMID:22995991 PMID:24082139 More... NCBI chr  X:74,916,548...75,062,880
Ensembl chr  X:70,850,981...70,997,330 		JBrowse link
G Gpc3 glypican 3 ISO protein:increased expression:brain (human) RGD PMID:23530909 RGD:243065128 NCBI chr  X:136,789,770...137,157,598
Ensembl chr  X:131,868,990...132,236,798 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 ISS
ISO		 OMIM:609322
ClinVar Annotator: match by term: Teratoid tumor, atypical		 MouseDO
ClinVar		 PMID:25741868 NCBI chr20:12,740,105...12,763,054
Ensembl chr20:12,741,477...12,763,620 		JBrowse link
G Tp53 tumor protein p53 ISO ClinVar Annotator: match by term: Atypical teratoid/rhabdoid tumor ClinVar PMID:1565143 PMID:1591732 PMID:2046748 PMID:4122735 PMID:7565304 More... NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
rhabdoid cancer term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myc MYC proto-oncogene, bHLH transcription factor ISO protein:increased expression:kidney (human) RGD PMID:20212451 RGD:7207430 NCBI chr 7:95,483,105...95,488,031
Ensembl chr 7:93,593,705...93,598,630 		JBrowse link
G Pgbd5 piggyBac transposable element derived 5 ISO CTD Direct Evidence: marker/mechanism CTD PMID:28504702 NCBI chr19:52,336,751...52,401,906
Ensembl chr19:52,336,751...52,402,397 		JBrowse link
G Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 ISO DNA:nonsense mutation, deletions, insertions:multiple (human)
CTD Direct Evidence: marker/mechanism
protein:decreased expression:brain, kidney, soft tissue:		 CTD
RGD		 PMID:25009291 PMID:26343384 PMID:9671307 PMID:16528370 RGD:1599055, RGD:155804291 NCBI chr20:12,740,105...12,763,054
Ensembl chr20:12,741,477...12,763,620 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19140
    disease of cellular proliferation 7891
      cancer 5720
        organ system cancer 5467
          urinary system cancer 678
            kidney cancer 478
              childhood kidney cancer 6
                congenital mesoblastic nephroma + 0
                rhabdoid cancer + 6
Path 2
Term Annotations click to browse term
  disease 19140
    disease of cellular proliferation 7891
      Neoplasms by Site 7333
        Urogenital Neoplasms 2346
          Urologic Neoplasms 729
            urinary system cancer 678
              kidney cancer 478
                childhood kidney cancer 6
                  congenital mesoblastic nephroma + 0
                  rhabdoid cancer + 6
paths to the root