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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:cleidocranial dysplasia
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Accession:DOID:13994 term browser browse the term
Definition:An osteochondrodysplasia that has_material_basis_in mutations in the RUNX2 gene which results_in undeveloped or absent located_in clavicle along with delayed closing of fontanels in the located_in skull. (DO)
Synonyms:exact_synonym: CCD;   CLCD1;   Marie Sainton syndrome;   Marie-Sainton disease;   Scheuthauer Marie Sainton syndrome;   cleidocranial digital dysostoses;   cleidocranial digital dysostosis;   cleidocranial dysostoses;   cleidocranial dysostosis;   cleidocranial dysplasia 1;   cleidocranial dysplasias
 narrow_synonym: CLEIDOCRANIAL DYSPLASIA, FORME FRUSTE;   LARGE FONTANELLES;   cleidocranial dysplasia 1, forme fruste, dental anomalies only;   cleidocranial dysplasia 1, forme fruste, with brachydactyly;   severe cleidocranial dysplasia with osteoporosis and scoliosis
 broad_synonym: RUNX2-RELATED CONDITION
 primary_id: MESH:D002973
 alt_id: MIM:119600
 xref: EFO:0004153;   GARD:6118;   ICD10CM:Q74.0;   MONDO:0007340;   NCI:C75020;   ORDO:1452
For additional species annotation, visit the Alliance of Genome Resources.



show annotations for term's descendants           Sort by:
cleidocranial dysplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO ClinVar Annotator: match by term: Large fontanelles ClinVar PMID:25741868 PMID:35005812 NCBI chr19:52,529,139...52,549,618
Ensembl chr19:52,529,185...52,540,977
JBrowse link
G Runx2 RUNX family transcription factor 2 ISO
ISS
DNA:insertion, point mutation:exon:p.W283X (human)
CTD Direct Evidence: marker/mechanism
OMIM:119600 | OMIM:216330
ClinVar Annotator: match by term: CLEIDOCRANIAL DYSPLASIA 1 | ClinVar Annotator: match by term: Cleidocranial dysostosis | ClinVar Annotator: match by term: Cleidocranial dysplasia 1, forme fruste, dental anomalies only | ClinVar Annotator: match by term: Cleidocranial dysplasia 1, forme fruste, with brachydactyly
OMIM
CTD
MouseDO
ClinVar
RGD
PMID:9182765 PMID:9207800 PMID:10521292 PMID:10545612 PMID:10980549 More... RGD:1601649 NCBI chr 9:16,167,504...16,492,826
Ensembl chr 9:16,167,482...16,492,167
JBrowse link
G Supt3h SPT3 homolog, SAGA and STAGA complex component ISO ClinVar Annotator: match by term: Cleidocranial dysostosis ClinVar PMID:33987976 NCBI chr 9:15,878,296...16,206,768
Ensembl chr 9:15,868,287...16,206,706
JBrowse link
G Tbx1 T-box transcription factor 1 ISO RGD PMID:25209980 RGD:155641242 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link
Parietal Foramina with Cleidocranial Dysplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Msx2 msh homeobox 2 ISO ClinVar Annotator: match by term: Parietal foramina with cleidocranial dysplasia
CTD Direct Evidence: marker/mechanism
OMIM
ClinVar
CTD
PMID:14571277 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879
JBrowse link
Yunis-Varon syndrome term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fig4 FIG4 phosphoinositide 5-phosphatase ISO
ISS
ClinVar Annotator: match by term: Yunis-Varon syndrome
OMIM:216340
CTD Direct Evidence: marker/mechanism
OMIM
ClinVar
MouseDO
CTD
PMID:2319578 PMID:7496176 PMID:9536098 PMID:16199547 PMID:17572665 More... NCBI chr20:44,600,603...44,724,047
Ensembl chr20:44,600,603...44,723,844
JBrowse link
G Vac14 VAC14 component of PIKFYVE complex ISO ClinVar Annotator: match by term: Yunis-Varon syndrome ClinVar PMID:17956977 PMID:28492532 PMID:28635952 NCBI chr19:38,590,569...38,691,911
Ensembl chr19:38,590,569...38,691,909
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 19099
    Developmental Disease 14598
      bone development disease 2373
        osteochondrodysplasia 869
          cleidocranial dysplasia 7
            Cleidocranial Dysplasia, Forme Fruste, Dental Anomalies Only 0
            Cleidocranial Dysplasia, Forme Fruste, with Brachydactyly 0
            Cleidocranial Dysplasia, Recessive Form 0
            Parietal Foramina with Cleidocranial Dysplasia 1
            Yunis-Varon syndrome 2
Path 2
Term Annotations click to browse term
  disease 19099
    disease of anatomical entity 18440
      Skin and Connective Tissue Diseases 7807
        connective tissue disease 5958
          bone disease 4411
            bone development disease 2373
              osteochondrodysplasia 869
                cleidocranial dysplasia 7
                  Cleidocranial Dysplasia, Forme Fruste, Dental Anomalies Only 0
                  Cleidocranial Dysplasia, Forme Fruste, with Brachydactyly 0
                  Cleidocranial Dysplasia, Recessive Form 0
                  Parietal Foramina with Cleidocranial Dysplasia 1
                  Yunis-Varon syndrome 2
paths to the root