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isopentenyl diphosphate - Ontology Report - Rat Genome Database

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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:isopentenyl diphosphate
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Accession:CHEBI:16584 term browser browse the term
Definition:A prenol phosphate comprising 3-methylbut-3-en-1-ol having an O-diphosphate substituent.
Synonyms:related_synonym: 3-Methyl-3-butenyl pyrophosphate;   3-methylbut-3-en-1-yl trihydrogen diphosphate;   3-methylbut-3-enyl phosphono hydrogen phosphate;   Diphosphoric acid mono(3-methyl-3-butenyl) ester;   Formula=C5H12O7P2;   IPP;   IPPP;   InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h1,3-4H2,2H3,(H,9,10)(H2,6,7,8);   InChIKey=NUHSROFQTUXZQQ-UHFFFAOYSA-N;   Isopentenyl pyrophosphate;   Mono(3-methyl-3-butenyl) diphosphate;   SMILES=CC(=C)CCOP(O)(=O)OP(O)(O)=O;   delta-3-Isopentenyl pyrophosphate;   delta3-Methyl-3-butenyl diphosphate;   delta3-isopentenyl diphosphate
 alt_id: CHEBI:14473;   CHEBI:24907;   CHEBI:6037
 xref: CAS:358-71-4;   DrugBank:DB04714;   KEGG:C00129;   KNApSAcK:C00000848;   LIPID_MAPS_instance:LMPR01010008
 xref_mesh: MESH:C004809
 xref: PDBeChem:IPE;   PMID:11278429;   PMID:15450402;   PMID:23000003;   PMID:23543734;   PMID:23747531;   PMID:23872678;   PMID:7584140;   PMID:7753173;   Reaxys:1713792;   Wikipedia:Isopentenyl_pyrophosphate
 cyclic_relationship: is_conjugate_acid_of CHEBI:128769

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isopentenyl diphosphate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccr5 C-C motif chemokine receptor 5 decreases expression ISO isopentenyl pyrophosphate results in decreased expression of CCR5 protein CTD PMID:11994442 NCBI chr 8:132,629,097...132,660,980
Ensembl chr 8:123,752,325...123,759,260 		JBrowse link
G Fdps farnesyl diphosphate synthase multiple interactions ISO [zoledronic acid results in decreased activity of FDPS protein] which results in increased abundance of isopentenyl pyrophosphate CTD PMID:19699819 NCBI chr 2:176,795,192...176,804,816
Ensembl chr 2:174,486,665...174,507,776 		JBrowse link
G Fgf9 fibroblast growth factor 9 increases expression ISO isopentenyl pyrophosphate results in increased expression of FGF9 mRNA; isopentenyl pyrophosphate results in increased expression of FGF9 protein CTD PMID:14704367 NCBI chr15:36,325,552...36,369,995
Ensembl chr15:32,210,074...32,253,309 		JBrowse link
G Ifng interferon gamma multiple interactions
increases expression		 ISO Calcitriol inhibits the reaction [isopentenyl pyrophosphate results in increased expression of IFNG protein] CTD PMID:15879110 NCBI chr 7:55,789,180...55,793,216
Ensembl chr 7:53,903,337...53,907,375 		JBrowse link
G Il2ra interleukin 2 receptor subunit alpha multiple interactions
increases expression		 ISO Calcitriol inhibits the reaction [isopentenyl pyrophosphate results in increased expression of IL2RA protein] CTD PMID:15879110 NCBI chr17:71,759,802...71,808,475
Ensembl chr17:66,849,974...66,898,697 		JBrowse link
G Mvk mevalonate kinase multiple interactions
decreases activity		 ISO isopentenyl pyrophosphate inhibits the reaction [MVK protein results in increased hydrolysis of Adenosine Triphosphate]; isopentenyl pyrophosphate inhibits the reaction [MVK protein results in increased phosphorylation of Mevalonic Acid]
isopentenyl pyrophosphate results in decreased activity of MVK protein		 CTD PMID:9392419 NCBI chr12:47,802,002...47,819,503
Ensembl chr12:42,141,384...42,158,882 		JBrowse link
G Trpa1 transient receptor potential cation channel, subfamily A, member 1 multiple interactions ISO isopentenyl pyrophosphate inhibits the reaction [cinnamaldehyde results in increased activity of TRPA1 protein] CTD PMID:21353389 NCBI chr 5:9,163,060...9,217,325
Ensembl chr 5:4,379,999...4,433,570 		JBrowse link
G Trpv3 transient receptor potential cation channel, subfamily V, member 3 multiple interactions ISO isopentenyl pyrophosphate inhibits the reaction [Camphor results in increased activity of TRPV3 protein] CTD PMID:21353389 NCBI chr10:58,382,054...58,413,657
Ensembl chr10:57,883,546...57,913,296 		JBrowse link
G Vdr vitamin D receptor multiple interactions
increases expression		 ISO 2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-one inhibits the reaction [isopentenyl pyrophosphate results in increased expression of VDR protein]; Go 6976 inhibits the reaction [isopentenyl pyrophosphate results in increased expression of VDR protein]; U 0126 inhibits the reaction [isopentenyl pyrophosphate results in increased expression of VDR protein] CTD PMID:15879110 NCBI chr 7:130,864,764...130,916,757
Ensembl chr 7:128,987,981...129,037,677 		JBrowse link
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  CHEBI ontology 19887
    role 19858
      chemical role 19483
        antioxidant 16181
          isopentenyl diphosphate 9
Path 2
Term Annotations click to browse term
  CHEBI ontology 19887
    subatomic particle 19885
      composite particle 19885
        hadron 19885
          baryon 19885
            nucleon 19885
              atomic nucleus 19885
                atom 19885
                  main group element atom 19824
                    p-block element atom 19824
                      chalcogen 19580
                        oxygen atom 19551
                          oxygen molecular entity 19551
                            hydroxides 19361
                              oxoacid 18797
                                pnictogen oxoacid 15018
                                  phosphorus oxoacid 14577
                                    phosphoric acids 13927
                                      phosphoric acid 13927
                                        phosphoric acid derivative 13839
                                          phosphate 13838
                                            organic phosphate 13838
                                              phospholipid 326
                                                isoprenoid phosphate 75
                                                  prenol phosphate 75
                                                    isopentenyl diphosphate 9
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