Pkm (pyruvate kinase, muscle) - Rat Genome Database

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Gene: Pkm (pyruvate kinase, muscle) Mus musculus
Analyze
Symbol: Pkm
Name: pyruvate kinase, muscle
RGD ID: 737502
MGI Page MGI
Description: Enables mRNA binding activity and pyruvate kinase activity. Involved in canonical glycolysis and positive regulation of cytoplasmic translation. Located in cilium and rough endoplasmic reticulum. Is active in cytosol. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Orthologous to human PKM (pyruvate kinase M1/2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA414905; AL024370; AL024424; Pk; Pk-; Pk-2; Pk-3; Pk3; Pkm2; pyruvate kinase 3; pyruvate kinase isozymes M1/M2; pyruvate kinase muscle isozyme; pyruvate kinase PKM; threonine-protein kinase PKM2; tyrosine-protein kinase PKM2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm13810   Gm13812   Gm14504   Gm16459   Gm17138   Gm21018   Gm4837   Gm4915   Gm5216   Gm5371   Gm6560   Gm6992   Gm7046   Gm8044   Gm8881  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39959,563,859 - 59,586,655 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl959,563,651 - 59,586,658 (+)EnsemblGRCm39 Ensembl
GRCm38959,656,576 - 59,679,372 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl959,656,368 - 59,679,375 (+)EnsemblGRCm38mm10GRCm38
MGSCv37959,504,415 - 59,527,182 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36959,454,614 - 59,477,381 (+)NCBIMGSCv36mm8
Celera956,883,742 - 56,906,668 (+)NCBICelera
Cytogenetic Map9BNCBI
cM Map932.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
(R)-adrenaline  (EXP,ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2,4-trimethylbenzene  (ISO)
1,4-benzoquinone  (EXP,ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (ISO)
2,5-hexanedione  (ISO)
2-acetamidofluorene  (ISO)
2-deoxy-D-glucose  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,5-diethoxycarbonyl-1,4-dihydrocollidine  (EXP)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methyladenine  (ISO)
3-phenylprop-2-enal  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-chlorobiphenyl  (ISO)
4-hydroxynon-2-enal  (ISO)
4-phenylbutyric acid  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
5-Hydroxyflavone  (ISO)
6-Hydroxyflavone  (ISO)
7-hydroxyflavone  (ISO)
7H-xanthine  (ISO)
9-cis-retinoic acid  (ISO)
9H-xanthine  (ISO)
acetamide  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-D-galactose  (ISO)
alpha-naphthoflavone  (ISO)
alpha-pinene  (ISO)
alpha-Zearalanol  (ISO)
ammonium chloride  (ISO)
ampicillin  (ISO)
apigenin  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atorvastatin calcium  (ISO)
atrazine  (ISO)
baicalein  (ISO)
baicalin  (ISO)
Bardoxolone methyl  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bifenthrin  (EXP)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bruceine D  (ISO)
C.I. Natural Red 20  (EXP)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
cadmium sulfate  (EXP)
caffeine  (ISO)
carbon nanotube  (EXP)
CCCP  (ISO)
celastrol  (EXP)
CGP 52608  (ISO)
chloromethylisothiazolinone  (ISO)
choline  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
clozapine  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
DDT  (ISO)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dichloroacetic acid  (ISO)
dicrotophos  (ISO)
dihydroartemisinin  (ISO)
diosmetin  (ISO)
dioxygen  (EXP,ISO)
diuron  (ISO)
dopamine  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
elemental selenium  (ISO)
emodin  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
flavone  (ISO)
flavonol  (ISO)
folic acid  (EXP)
formaldehyde  (EXP,ISO)
FR900359  (ISO)
fructose  (ISO)
fulvestrant  (EXP,ISO)
Fusaric acid  (ISO)
galactose  (ISO)
gemcitabine  (ISO)
genistein  (ISO)
glucose  (ISO)
glyphosate  (EXP)
gold atom  (EXP)
gold(0)  (EXP)
GW 3965  (EXP)
haloperidol  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
L-ascorbic acid  (EXP)
L-methionine  (EXP)
lipopolysaccharide  (EXP)
lovastatin  (EXP)
luteolin  (ISO)
LY294002  (EXP)
mercury dichloride  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methidathion  (EXP)
methoxychlor  (ISO)
methylazoxymethanol  (EXP)
methylmercury chloride  (ISO)
miconazole  (EXP)
N-acetyl-L-cysteine  (EXP,ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
naphthalene  (EXP)
nickel dichloride  (EXP)
nickel subsulfide  (EXP)
niclosamide  (ISO)
ochratoxin A  (ISO)
ozone  (EXP,ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
PhIP  (ISO)
phosphoenolpyruvate  (ISO)
potassium dichromate  (ISO)
progesterone  (EXP)
promethazine  (ISO)
Propiverine  (ISO)
quartz  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
reactive oxygen species  (EXP)
resveratrol  (ISO)
rotenone  (ISO)
SAICAR  (ISO)
SB 431542  (ISO)
scutellarin  (ISO)
selenium atom  (ISO)
Shikonin  (EXP)
silicon dioxide  (ISO)
sirolimus  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (EXP)
sodium nitrate  (EXP)
streptozocin  (EXP)
sulindac sulfide  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tanespimycin  (ISO)
tangeretin  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (ISO)
tributylstannane  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (EXP)
triphenylstannane  (ISO)
Triptolide  (EXP)
tunicamycin  (ISO)
ubiquinone-0  (ISO)
undecane  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
warfarin  (EXP)
wogonin  (ISO)
Yessotoxin  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
2. Effects of Tianshu Capsule on Spontaneously Hypertensive Rats as Revealed by 1H-NMR-Based Metabolic Profiling. Gao J, etal., Front Pharmacol. 2019 Sep 11;10:989. doi: 10.3389/fphar.2019.00989. eCollection 2019.
3. Relationships between concentration of hepatic intermediary metabolites and induction of the key glycolytic enzymes in vivo. Gunn JM and Taylor CB, Biochem J. 1973 Nov;136(3):455-65.
4. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
5. Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
6. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
7. MGDs mouse GO annotations MGD data from the GO Consortium
8. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, etal., Cell 2003 Nov 26;115(5):629-40.
9. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
10. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
11. Response of rat cerebral glycolytic enzymes to hyperammonemic states. Ratnakumari L and Murthy CR, Neurosci Lett. 1993 Oct 14;161(1):37-40.
12. Mouse MP Annotation Import Pipeline RGD automated import pipeline
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:662012   PMID:752545   PMID:3082971   PMID:6241468   PMID:7063884   PMID:7262549   PMID:7295297   PMID:7612666   PMID:7616504   PMID:7671812   PMID:8565329   PMID:9006960  
PMID:9545585   PMID:9722956   PMID:9806360   PMID:10349636   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11812828   PMID:12477932   PMID:12520002   PMID:12843653  
PMID:12904583   PMID:14519200   PMID:14610273   PMID:14681479   PMID:14685273   PMID:15489334   PMID:15582152   PMID:15782199   PMID:15840001   PMID:16141072   PMID:16141073   PMID:16196101  
PMID:16602821   PMID:16687649   PMID:17446165   PMID:17500595   PMID:17626619   PMID:17634366   PMID:17761669   PMID:17967808   PMID:18191611   PMID:18307411   PMID:18337815   PMID:18337823  
PMID:18519040   PMID:18799693   PMID:19521500   PMID:19563799   PMID:19920251   PMID:20133837   PMID:20847263   PMID:21267068   PMID:21325052   PMID:21565611   PMID:21873635   PMID:22334075  
PMID:22496890   PMID:22673621   PMID:22705452   PMID:22794259   PMID:22904094   PMID:23299472   PMID:23658023   PMID:23901116   PMID:23917405   PMID:24086110   PMID:24100037   PMID:24120138  
PMID:24120661   PMID:24390569   PMID:24457600   PMID:24492614   PMID:24606916   PMID:24817408   PMID:25196998   PMID:25215489   PMID:25261685   PMID:25313047   PMID:25313085   PMID:25482511  
PMID:25565206   PMID:25735978   PMID:26300261   PMID:26370502   PMID:26496610   PMID:26590968   PMID:26780311   PMID:26808610   PMID:26823761   PMID:26857472   PMID:26917721   PMID:27125672  
PMID:27160897   PMID:27199445   PMID:27606486   PMID:27694478   PMID:27779186   PMID:27821480   PMID:27903739   PMID:28067230   PMID:28203794   PMID:28245920   PMID:28378742   PMID:28436957  
PMID:28515149   PMID:28569774   PMID:28575669   PMID:28598329   PMID:28630053   PMID:28743549   PMID:28964797   PMID:29228266   PMID:29259242   PMID:29382714   PMID:29445082   PMID:29462566  
PMID:29530978   PMID:29533781   PMID:29652636   PMID:29732501   PMID:29752288   PMID:29970877   PMID:29996098   PMID:30131339   PMID:30196744   PMID:30222136   PMID:30257458   PMID:30301887  
PMID:30318996   PMID:30333137   PMID:30409900   PMID:30487609   PMID:30550785   PMID:30562941   PMID:30595499   PMID:30713523   PMID:30970216   PMID:30996297   PMID:31040226   PMID:31213573  
PMID:31328803   PMID:31462699   PMID:31480861   PMID:31500508   PMID:31636306   PMID:31652947   PMID:31823361   PMID:31924651   PMID:32071304   PMID:32078387   PMID:32096765   PMID:32101747  
PMID:32198052   PMID:32212902   PMID:32236591   PMID:32325033   PMID:32342224   PMID:32366925   PMID:32393782   PMID:32554809   PMID:32679047   PMID:32697823   PMID:32747016   PMID:32805235  
PMID:32812866   PMID:33027814   PMID:33059001   PMID:33109748   PMID:33378226   PMID:33390389   PMID:33526685   PMID:33542713   PMID:33662229   PMID:33691477   PMID:33973628   PMID:33978226  
PMID:34025679   PMID:34102853   PMID:34160104   PMID:34383048   PMID:34408323   PMID:34529778   PMID:34645459   PMID:34677125   PMID:34733164   PMID:34798593   PMID:34804260   PMID:34879266  
PMID:34903602   PMID:35026348   PMID:35133981   PMID:35149342   PMID:35232222   PMID:35400205   PMID:35563621   PMID:35584006   PMID:35637461   PMID:35656980   PMID:35821123   PMID:35974691  
PMID:35983049   PMID:35997256   PMID:36114006   PMID:36293380   PMID:36322626   PMID:36400183   PMID:36417873   PMID:36577385   PMID:36588153   PMID:36799552   PMID:36848232   PMID:36894047  
PMID:36899022   PMID:37301463   PMID:37440075   PMID:37525533   PMID:37539568   PMID:37626853   PMID:37734200   PMID:37749923   PMID:37897635   PMID:38068962   PMID:38160539   PMID:38176945  
PMID:38342404   PMID:38355793   PMID:38418556   PMID:38464826   PMID:38605203  


Genomics

Comparative Map Data
Pkm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39959,563,859 - 59,586,655 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl959,563,651 - 59,586,658 (+)EnsemblGRCm39 Ensembl
GRCm38959,656,576 - 59,679,372 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl959,656,368 - 59,679,375 (+)EnsemblGRCm38mm10GRCm38
MGSCv37959,504,415 - 59,527,182 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36959,454,614 - 59,477,381 (+)NCBIMGSCv36mm8
Celera956,883,742 - 56,906,668 (+)NCBICelera
Cytogenetic Map9BNCBI
cM Map932.03NCBI
PKM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381572,199,029 - 72,231,591 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1572,199,029 - 72,231,819 (-)EnsemblGRCh38hg38GRCh38
GRCh371572,491,370 - 72,523,531 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361570,278,424 - 70,310,738 (-)NCBINCBI36Build 36hg18NCBI36
Build 341570,278,423 - 70,310,738NCBI
Celera1549,377,704 - 49,410,018 (-)NCBICelera
Cytogenetic Map15q23NCBI
HuRef1549,321,965 - 49,354,312 (-)NCBIHuRef
CHM1_11572,609,505 - 72,641,870 (-)NCBICHM1_1
T2T-CHM13v2.01570,015,755 - 70,047,883 (-)NCBIT2T-CHM13v2.0
Pkm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8868,949,731 - 68,975,394 (+)NCBIGRCr8
mRatBN7.2860,057,629 - 60,079,600 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl860,057,402 - 60,079,599 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx865,580,124 - 65,601,628 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0863,853,049 - 63,874,553 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0861,722,501 - 61,744,005 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0864,480,963 - 64,502,957 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl864,481,172 - 64,502,722 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0864,243,957 - 64,265,970 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4863,486,492 - 63,508,016 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1863,505,545 - 63,527,070 (+)NCBI
Celera859,500,837 - 59,522,361 (+)NCBICelera
RH 3.4 Map8703.1RGD
Cytogenetic Map8q24NCBI
Pkm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554504,907,788 - 4,936,199 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554504,907,962 - 4,935,179 (+)NCBIChiLan1.0ChiLan1.0
PKM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21661,463,312 - 61,495,601 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11565,627,528 - 65,659,784 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01551,149,584 - 51,182,193 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11569,913,455 - 69,946,070 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1569,913,455 - 69,945,832 (-)Ensemblpanpan1.1panPan2
PKM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13035,712,853 - 35,737,643 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3035,649,842 - 35,676,381 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03035,917,488 - 35,942,263 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3035,912,436 - 35,944,108 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13035,870,513 - 35,897,163 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03035,898,407 - 35,923,216 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03036,153,315 - 36,179,852 (-)NCBIUU_Cfam_GSD_1.0
Pkm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640113,741,261 - 113,769,688 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647131,589,324 - 31,617,873 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647131,589,322 - 31,617,891 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PKM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl761,013,723 - 61,032,777 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1 Ensembl760,975,667 - 61,004,316 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1760,971,807 - 61,032,780 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2765,514,303 - 65,575,391 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PKM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12611,224,332 - 11,255,538 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048130,316,867 - 130,349,792 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pkm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247811,796,801 - 1,824,144 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247811,796,909 - 1,823,787 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pkm
662 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:490
Count of miRNA genes:206
Interacting mature miRNAs:219
Transcripts:ENSMUST00000034834, ENSMUST00000163694
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
1301549Bbaa9_mB.burgdorferi-associated arthritis 9 (mouse)Not determined95780504771481754Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95455996088559960Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
13525008Hrtiq1_mheart rate time index, QTL 1 (mouse)95242609868556008Mouse
1301287Feml2_mfemur length in high growth mice 2 (mouse)Not determined95750728363207282Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1301051Eae9_msusceptibility to experimental allergic encephalomyelitis 9 (mouse)Not determined94942029863239852Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
1301049El4_mepilepsy 4 (mouse)Not determined94942029867151448Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95780504786121973Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
4141572Ntta3_mneurotensin transcript abundance 3 (mouse)Not determined4659767165831177Mouse
13525007Lfhrvq1_mlow frequency time index heart rate varaiblity, QTL 1 (mouse)95878431868556008Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95936994693370128Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
1301965Vmbic5_mventral midbrain iron content 5 (mouse)Not determined95759149265831177Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95902438793024534Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95902438793024534Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95936994693370128Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95936994693370128Mouse

Markers in Region
RH124265  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9BUniSTS
cM Map952.0UniSTS
RH125516  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9BUniSTS
cM Map952.0UniSTS
RH125535  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38959,679,061 - 59,679,210UniSTSGRCm38
MGSCv37959,526,868 - 59,527,017UniSTSGRCm37
Celera956,906,354 - 56,906,503UniSTS
Cytogenetic Map9BUniSTS
cM Map952.0UniSTS
Pkm2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381231,019,303 - 31,020,129UniSTSGRCm38
GRCm381286,714,983 - 86,715,823UniSTSGRCm38
MGSCv371231,704,168 - 31,704,994UniSTSGRCm37
MGSCv371288,055,933 - 88,056,773UniSTSGRCm37
Celera1288,177,035 - 88,177,875UniSTS
Celera1232,471,525 - 32,472,351UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map9BUniSTS
cM Map952.0UniSTS
Pk3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9BUniSTS
cM Map952.0UniSTS
cM Map932.03UniSTS
Pkm2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9BUniSTS
Pkm2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38959,675,611 - 59,675,679UniSTSGRCm38
MGSCv37959,523,418 - 59,523,486UniSTSGRCm37
Celera956,902,940 - 56,903,008UniSTS
Cytogenetic Map9BUniSTS
Pkm2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9BUniSTS
Pkm2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9BUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001253883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_166145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_166146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC160637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB819292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI985789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB846337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D38379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X97047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000034834   ⟹   ENSMUSP00000034834
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,563,651 - 59,586,658 (+)Ensembl
GRCm38.p6 Ensembl959,656,368 - 59,679,375 (+)Ensembl
RefSeq Acc Id: ENSMUST00000163694   ⟹   ENSMUSP00000128770
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,563,856 - 59,586,472 (+)Ensembl
GRCm38.p6 Ensembl959,656,573 - 59,679,189 (+)Ensembl
RefSeq Acc Id: ENSMUST00000213220
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,578,869 - 59,582,765 (+)Ensembl
GRCm38.p6 Ensembl959,671,586 - 59,675,482 (+)Ensembl
RefSeq Acc Id: ENSMUST00000213930   ⟹   ENSMUSP00000150578
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,565,526 - 59,577,881 (+)Ensembl
GRCm38.p6 Ensembl959,658,243 - 59,670,598 (+)Ensembl
RefSeq Acc Id: ENSMUST00000214571
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,563,859 - 59,580,242 (+)Ensembl
GRCm38.p6 Ensembl959,656,576 - 59,672,959 (+)Ensembl
RefSeq Acc Id: ENSMUST00000215623   ⟹   ENSMUSP00000150901
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,563,872 - 59,576,284 (+)Ensembl
GRCm38.p6 Ensembl959,656,589 - 59,669,001 (+)Ensembl
RefSeq Acc Id: ENSMUST00000215660   ⟹   ENSMUSP00000149206
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,563,881 - 59,576,378 (+)Ensembl
GRCm38.p6 Ensembl959,656,598 - 59,669,095 (+)Ensembl
RefSeq Acc Id: ENSMUST00000216620   ⟹   ENSMUSP00000151199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,564,521 - 59,572,650 (+)Ensembl
GRCm38.p6 Ensembl959,657,238 - 59,665,367 (+)Ensembl
RefSeq Acc Id: ENSMUST00000216857   ⟹   ENSMUSP00000150188
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,572,085 - 59,575,892 (+)Ensembl
GRCm38.p6 Ensembl959,664,802 - 59,668,609 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217038   ⟹   ENSMUSP00000150509
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,564,523 - 59,576,371 (+)Ensembl
GRCm38.p6 Ensembl959,657,240 - 59,669,088 (+)Ensembl
RefSeq Acc Id: ENSMUST00000217353   ⟹   ENSMUSP00000149983
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl959,563,942 - 59,576,346 (+)Ensembl
GRCm38.p6 Ensembl959,656,659 - 59,669,063 (+)Ensembl
RefSeq Acc Id: NM_001253883   ⟹   NP_001240812
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,563,859 - 59,586,655 (+)NCBI
GRCm38959,656,576 - 59,679,372 (+)NCBI
Celera956,883,502 - 56,906,668 (+)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001378866   ⟹   NP_001365795
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,563,859 - 59,586,655 (+)NCBI
GRCm38959,656,576 - 59,679,372 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001378867   ⟹   NP_001365796
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,564,510 - 59,586,655 (+)NCBI
GRCm38959,657,227 - 59,679,372 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001378868   ⟹   NP_001365797
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,563,859 - 59,586,655 (+)NCBI
GRCm38959,656,576 - 59,679,372 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001378869   ⟹   NP_001365798
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,564,510 - 59,586,655 (+)NCBI
GRCm38959,657,227 - 59,679,372 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001378870   ⟹   NP_001365799
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,564,510 - 59,586,655 (+)NCBI
GRCm38959,657,227 - 59,679,372 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001378871   ⟹   NP_001365800
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,564,510 - 59,586,655 (+)NCBI
GRCm38959,657,227 - 59,679,372 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001378872   ⟹   NP_001365801
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,564,510 - 59,586,655 (+)NCBI
GRCm38959,657,227 - 59,679,372 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001405491   ⟹   NP_001392420
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,565,708 - 59,586,655 (+)NCBI
RefSeq Acc Id: NM_011099   ⟹   NP_035229
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,563,859 - 59,586,655 (+)NCBI
GRCm38959,656,576 - 59,679,372 (+)NCBI
MGSCv37959,504,415 - 59,527,182 (+)RGD
Celera956,883,502 - 56,906,668 (+)ENTREZGENE
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_166145
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,563,859 - 59,586,655 (+)NCBI
GRCm38959,656,576 - 59,679,372 (+)NCBI
Sequence:
RefSeq Acc Id: NR_166146
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,563,859 - 59,586,655 (+)NCBI
GRCm38959,656,576 - 59,679,372 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006510855   ⟹   XP_006510918
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,564,443 - 59,586,655 (+)NCBI
GRCm38959,657,160 - 59,679,372 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006510856   ⟹   XP_006510919
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,566,869 - 59,586,655 (+)NCBI
GRCm38959,663,108 - 59,679,372 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011242674   ⟹   XP_011240976
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,564,299 - 59,586,655 (+)NCBI
GRCm38959,657,016 - 59,679,372 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154690   ⟹   XP_036010583
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,566,869 - 59,586,655 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154691   ⟹   XP_036010584
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39959,564,299 - 59,586,655 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001240812 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365795 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365796 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365797 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365798 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365799 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365800 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365801 (Get FASTA)   NCBI Sequence Viewer  
  NP_001392420 (Get FASTA)   NCBI Sequence Viewer  
  NP_035229 (Get FASTA)   NCBI Sequence Viewer  
  XP_006510918 (Get FASTA)   NCBI Sequence Viewer  
  XP_006510919 (Get FASTA)   NCBI Sequence Viewer  
  XP_011240976 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010583 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010584 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH16619 (Get FASTA)   NCBI Sequence Viewer  
  AAH94663 (Get FASTA)   NCBI Sequence Viewer  
  BAA07457 (Get FASTA)   NCBI Sequence Viewer  
  BAB22025 (Get FASTA)   NCBI Sequence Viewer  
  BAE22519 (Get FASTA)   NCBI Sequence Viewer  
  BAE30642 (Get FASTA)   NCBI Sequence Viewer  
  BAE32031 (Get FASTA)   NCBI Sequence Viewer  
  BAE33055 (Get FASTA)   NCBI Sequence Viewer  
  BAE33370 (Get FASTA)   NCBI Sequence Viewer  
  BAE40751 (Get FASTA)   NCBI Sequence Viewer  
  BAE42098 (Get FASTA)   NCBI Sequence Viewer  
  BAE42192 (Get FASTA)   NCBI Sequence Viewer  
  BAE42199 (Get FASTA)   NCBI Sequence Viewer  
  CAA65761 (Get FASTA)   NCBI Sequence Viewer  
  EDL25978 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000034834
  ENSMUSP00000034834.10
  ENSMUSP00000128770
  ENSMUSP00000128770.3
  ENSMUSP00000149206.2
  ENSMUSP00000149983.2
  ENSMUSP00000150188.2
  ENSMUSP00000150509.2
  ENSMUSP00000150578.2
  ENSMUSP00000150901.2
  ENSMUSP00000151199.2
GenBank Protein P52480 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_035229   ⟸   NM_011099
- Peptide Label: isoform M2
- UniProtKB: Q91YI8 (UniProtKB/Swiss-Prot),   Q64484 (UniProtKB/Swiss-Prot),   Q4VC20 (UniProtKB/Swiss-Prot),   Q3U5P6 (UniProtKB/Swiss-Prot),   Q3U1X3 (UniProtKB/Swiss-Prot),   Q3TC59 (UniProtKB/Swiss-Prot),   Q3TBW5 (UniProtKB/Swiss-Prot),   Q3TBV8 (UniProtKB/Swiss-Prot),   Q9CWB1 (UniProtKB/Swiss-Prot),   P52480 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001240812   ⟸   NM_001253883
- Peptide Label: isoform M1
- UniProtKB: P52480 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510918   ⟸   XM_006510855
- Peptide Label: isoform X4
- UniProtKB: Q91YI8 (UniProtKB/Swiss-Prot),   Q64484 (UniProtKB/Swiss-Prot),   Q4VC20 (UniProtKB/Swiss-Prot),   Q3U5P6 (UniProtKB/Swiss-Prot),   Q3U1X3 (UniProtKB/Swiss-Prot),   Q3TC59 (UniProtKB/Swiss-Prot),   Q3TBW5 (UniProtKB/Swiss-Prot),   Q3TBV8 (UniProtKB/Swiss-Prot),   Q9CWB1 (UniProtKB/Swiss-Prot),   P52480 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510919   ⟸   XM_006510856
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_011240976   ⟸   XM_011242674
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001365795   ⟸   NM_001378866
- Peptide Label: isoform M1
RefSeq Acc Id: NP_001365797   ⟸   NM_001378868
- Peptide Label: isoform M2
- UniProtKB: Q3U1X3 (UniProtKB/Swiss-Prot),   Q3TC59 (UniProtKB/Swiss-Prot),   Q3TBW5 (UniProtKB/Swiss-Prot),   Q3TBV8 (UniProtKB/Swiss-Prot),   P52480 (UniProtKB/Swiss-Prot),   Q91YI8 (UniProtKB/Swiss-Prot),   Q64484 (UniProtKB/Swiss-Prot),   Q4VC20 (UniProtKB/Swiss-Prot),   Q3U5P6 (UniProtKB/Swiss-Prot),   Q9CWB1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001365800   ⟸   NM_001378871
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001365801   ⟸   NM_001378872
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001365798   ⟸   NM_001378869
- Peptide Label: isoform M2
- UniProtKB: Q91YI8 (UniProtKB/Swiss-Prot),   Q64484 (UniProtKB/Swiss-Prot),   Q4VC20 (UniProtKB/Swiss-Prot),   Q3U5P6 (UniProtKB/Swiss-Prot),   Q3U1X3 (UniProtKB/Swiss-Prot),   Q3TC59 (UniProtKB/Swiss-Prot),   Q3TBW5 (UniProtKB/Swiss-Prot),   Q3TBV8 (UniProtKB/Swiss-Prot),   P52480 (UniProtKB/Swiss-Prot),   Q9CWB1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001365796   ⟸   NM_001378867
- Peptide Label: isoform M1
RefSeq Acc Id: NP_001365799   ⟸   NM_001378870
- Peptide Label: isoform M2
- UniProtKB: Q91YI8 (UniProtKB/Swiss-Prot),   Q64484 (UniProtKB/Swiss-Prot),   Q4VC20 (UniProtKB/Swiss-Prot),   Q3U5P6 (UniProtKB/Swiss-Prot),   Q3U1X3 (UniProtKB/Swiss-Prot),   Q3TC59 (UniProtKB/Swiss-Prot),   Q3TBW5 (UniProtKB/Swiss-Prot),   Q3TBV8 (UniProtKB/Swiss-Prot),   P52480 (UniProtKB/Swiss-Prot),   Q9CWB1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000128770   ⟸   ENSMUST00000163694
RefSeq Acc Id: ENSMUSP00000149983   ⟸   ENSMUST00000217353
RefSeq Acc Id: ENSMUSP00000150509   ⟸   ENSMUST00000217038
RefSeq Acc Id: ENSMUSP00000150188   ⟸   ENSMUST00000216857
RefSeq Acc Id: ENSMUSP00000151199   ⟸   ENSMUST00000216620
RefSeq Acc Id: ENSMUSP00000034834   ⟸   ENSMUST00000034834
RefSeq Acc Id: ENSMUSP00000150578   ⟸   ENSMUST00000213930
RefSeq Acc Id: ENSMUSP00000149206   ⟸   ENSMUST00000215660
RefSeq Acc Id: ENSMUSP00000150901   ⟸   ENSMUST00000215623
RefSeq Acc Id: XP_036010584   ⟸   XM_036154691
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036010583   ⟸   XM_036154690
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001392420   ⟸   NM_001405491
- Peptide Label: isoform M1
Protein Domains
Pyruvate kinase barrel

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P52480-F1-model_v2 AlphaFold P52480 1-531 view protein structure

Promoters
RGD ID:6844968
Promoter ID:MM_KWN:57618
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000034834,   UC009PYF.1,   UC009PYG.1,   UC009PYH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36959,503,741 - 59,504,822 (+)MPROMDB
RGD ID:6848452
Promoter ID:MM_ACW:50783
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1
Transcripts:PKM2.GSEP07,   PKM2.ISEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36959,504,851 - 59,505,351 (+)MPROMDB
RGD ID:6848459
Promoter ID:MM_ACW:50784
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   MEF_B4
Transcripts:PKM2.FSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36959,505,079 - 59,505,579 (+)MPROMDB
RGD ID:6848930
Promoter ID:MM_TRO:10050
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   Brain
Transcripts:MTR006370.9.1306.8
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36959,512,684 - 59,513,184 (+)MPROMDB
RGD ID:6848928
Promoter ID:MM_TRO:10051
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour
Transcripts:MTR006370.9.1306.9
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36959,516,586 - 59,517,086 (+)MPROMDB
RGD ID:6848929
Promoter ID:MM_TRO:10052
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_4Hour
Transcripts:MTR006370.9.1306.10
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36959,518,346 - 59,518,846 (+)MPROMDB
RGD ID:6848472
Promoter ID:MM_ACW:50786
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   ES_Cell,   Lung
Transcripts:PKM2.LSEP07,   PKM2.MSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36959,519,761 - 59,525,837 (+)MPROMDB
RGD ID:8669848
Promoter ID:EPDNEW_M12954
Type:initiation region
Name:Pkm_1
Description:Mus musculus pyruvate kinase, muscle , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38959,656,576 - 59,656,636EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97591 AgrOrtholog
Ensembl Genes ENSMUSG00000032294 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034834 ENTREZGENE
  ENSMUST00000034834.16 UniProtKB/Swiss-Prot
  ENSMUST00000163694 ENTREZGENE
  ENSMUST00000163694.4 UniProtKB/Swiss-Prot
  ENSMUST00000213930.2 UniProtKB/TrEMBL
  ENSMUST00000215623.2 UniProtKB/TrEMBL
  ENSMUST00000215660.2 UniProtKB/TrEMBL
  ENSMUST00000216620.2 UniProtKB/TrEMBL
  ENSMUST00000216857.2 UniProtKB/TrEMBL
  ENSMUST00000217038.2 UniProtKB/TrEMBL
  ENSMUST00000217353.2 UniProtKB/TrEMBL
Gene3D-CATH 2.40.33.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.20.20.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.1380.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Pyr_Knase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pyrv/PenolPyrv_Kinase-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pyrv_Kinase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pyrv_Knase-like_insert_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pyrv_Knase_AS UniProtKB/Swiss-Prot
  Pyrv_Knase_brl UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pyrv_Knase_C UniProtKB/Swiss-Prot
  Pyrv_Knase_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pyrv_Knase_insert_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18746 UniProtKB/Swiss-Prot
MGD MGI:97591 ENTREZGENE
NCBI Gene 18746 ENTREZGENE
PANTHER PTHR11817 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PYRUVATE KINASE PKM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00224 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PK_C UniProtKB/Swiss-Prot
PhenoGen Pkm PhenoGen
PRINTS PYRUVTKNASE UniProtKB/Swiss-Prot
PROSITE PYRUVATE_KINASE UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50800 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF51621 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52935 UniProtKB/Swiss-Prot
UniProt A0A1L1SQV8_MOUSE UniProtKB/TrEMBL
  A0A1L1SSN6_MOUSE UniProtKB/TrEMBL
  A0A1L1ST52_MOUSE UniProtKB/TrEMBL
  A0A1L1STV8_MOUSE UniProtKB/TrEMBL
  A0A1L1SU37_MOUSE UniProtKB/TrEMBL
  A0A1L1SUV0_MOUSE UniProtKB/TrEMBL
  A0A1L1SVH2_MOUSE UniProtKB/TrEMBL
  KPYM_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TBV8 ENTREZGENE
  Q3TBW5 ENTREZGENE
  Q3TC59 ENTREZGENE
  Q3U1X3 ENTREZGENE
  Q3U5P6 ENTREZGENE
  Q4VC20 ENTREZGENE
  Q64484 ENTREZGENE
  Q91YI8 ENTREZGENE
  Q9CWB1 ENTREZGENE
UniProt Secondary Q3TBV8 UniProtKB/Swiss-Prot
  Q3TBW5 UniProtKB/Swiss-Prot
  Q3TC59 UniProtKB/Swiss-Prot
  Q3U1X3 UniProtKB/Swiss-Prot
  Q3U5P6 UniProtKB/Swiss-Prot
  Q4VC20 UniProtKB/Swiss-Prot
  Q64484 UniProtKB/Swiss-Prot
  Q91YI8 UniProtKB/Swiss-Prot
  Q9CWB1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-06-05 Pkm  pyruvate kinase, muscle  Pkm2  pyruvate kinase, muscle  Symbol and/or name change 5135510 APPROVED