Gm16459 (predicted gene 16459) - Rat Genome Database

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Gene: Gm16459 (predicted gene 16459) Mus musculus
Analyze
Symbol: Gm16459
Name: predicted gene 16459
RGD ID: 2311908
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG667641
Related Functional Gene: Pkm  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X161,627,866 - 161,628,519 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX161,627,834 - 161,628,519 (+)EnsemblGRCm39 Ensembl
GRCm38X162,844,870 - 162,845,523 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX162,844,838 - 162,845,523 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X159,282,802 - 159,283,455 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X159,282,821 - 159,284,744 (+)NCBIMGSCv36mm8
CeleraX146,068,953 - 146,069,606 (+)NCBICelera
Cytogenetic MapXF4NCBI
cM MapX75.05NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14610273  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:166
Count of miRNA genes:160
Interacting mature miRNAs:165
Transcripts:ENSMUST00000121443
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302000Pgia25_mproteoglycan induced arthritis 2 (mouse)Not determinedX144474380169476592Mouse
1357619Obsty5_mobesity 5 (mouse)Not determinedX160212893164149284Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1558900Bw3_mbody weight QTL 3 (mouse)Not determinedX133540040165298595Mouse
10401118Pgia39_mproteoglycan induced arthritis 39 (mouse)Not determinedX144474380169476592Mouse
12738421Lfibq17_mliver fibrosis QTL 17 (mouse)X148148453164945064Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_017997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL807822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000121443
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX161,627,834 - 161,628,519 (+)Ensembl
GRCm38.p6 EnsemblX162,844,838 - 162,845,523 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000084022 Ensembl, ENTREZGENE
MGD MGI:3644110 ENTREZGENE
NCBI Gene 671250 ENTREZGENE
PhenoGen Gm16459 PhenoGen