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ONTOLOGY REPORT - ANNOTATIONS

Term:TBP-class protein binding
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Accession:GO:0017025 term browser browse the term
Definition:Binding to a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs).
Synonyms:narrow_synonym: TATA-binding protein binding;   TBP binding;   TBP-related factor (TRF) protein binding


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TBP-class protein binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07015889.1 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr14:78,776,373...78,776,700 JBrowse link
G Ahr aryl hydrocarbon receptor enables ISO
IEA		 UniProtKB:P20226 (PMID:15641800)
GO_REF:0000107		 RGD
Ensembl		 PMID:15641800 GO_REF:0000107 NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568 		JBrowse link
G Brf1 BRF1, RNA polymerase III transcription initiation factor subunit enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:132,034,378...132,081,313
Ensembl chr 6:132,037,272...132,081,278 		JBrowse link
G Brf2 BRF2, RNA polymerase III transcription initiation factor subunit enables IEA
IBA		 GO_REF:0000118
GO_REF:0000033		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr16:64,928,334...64,933,057
Ensembl chr16:64,928,300...64,933,059 		JBrowse link
G Btaf1 B-TFIID TATA-box binding protein associated factor 1 enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:234,653,219...234,743,903
Ensembl chr 1:234,653,156...234,743,903 		JBrowse link
G Cand1 cullin-associated and neddylation-dissociated 1 IDA RGD PMID:8954946 RGD:634479 NCBI chr 7:54,681,114...54,719,002
Ensembl chr 7:54,680,900...54,718,993 		JBrowse link
G Cand2 cullin-associated and neddylation-dissociated 2 (putative) enables IDA
IEA
ISO		 GO_REF:0000107
(PMID:10441524)		 Ensembl
RGD		 PMID:10441524 PMID:10441524 GO_REF:0000107, RGD:634488 NCBI chr 4:148,835,050...148,864,039
Ensembl chr 4:148,835,053...148,863,153 		JBrowse link
G Dr1 down-regulator of transcription 1 enables ISO
IBA
IEA		 UniProtKB:P20226 (PMID:18838386), (PMID:8670811)
GO_REF:0000033
GO_REF:0000118		 RGD
GO_Central
TreeGrafter		 PMID:8670811 PMID:18838386 GO_REF:0000033 GO_REF:0000118 NCBI chr14:1,458,223...1,469,578
Ensembl chr14:1,458,223...1,469,638 		JBrowse link
G Drap1 Dr1 associated protein 1 enables ISO UniProtKB:P20226 (PMID:8670811) RGD PMID:8670811 NCBI chr 1:202,731,775...202,734,468
Ensembl chr 1:202,731,788...202,734,425 		JBrowse link
G ENSRNOG00000064241 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 5:97,975,779...97,977,813 JBrowse link
G ENSRNOG00000067796 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr15:22,674,189...22,674,524 JBrowse link
G Esr1 estrogen receptor 1 enables ISO
IEA		 UniProtKB:P13393 (PMID:11595744)
GO_REF:0000107		 RGD
Ensembl		 PMID:11595744 GO_REF:0000107 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002 		JBrowse link
G Gtf2a1 general transcription factor 2A subunit 1 enables ISO UniProtKB:P20226 (PMID:29111974), (PMID:7724559) RGD PMID:7724559 PMID:29111974 NCBI chr 6:110,488,891...110,521,502
Ensembl chr 6:110,488,931...110,521,511 		JBrowse link
G Gtf2a2 general transcription factor 2A subunit 2 enables ISO
IEA
IBA		 UniProtKB:P20226 (PMID:7724559), (PMID:8626665)
GO_REF:0000118
GO_REF:0000033		 RGD
TreeGrafter
GO_Central		 PMID:7724559 PMID:8626665 GO_REF:0000033 GO_REF:0000118 NCBI chr 8:70,662,447...70,675,576
Ensembl chr 8:70,662,428...70,675,569 		JBrowse link
G Gtf2b general transcription factor IIB enables ISO
IEA
IBA		 UniProtKB:P20226 (PMID:9841876)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000118
GO_REF:0000033		 RGD
Ensembl
InterPro
TreeGrafter
GO_Central		 PMID:9841876 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651 		JBrowse link
G Hnrnpf heterogeneous nuclear ribonucleoprotein F IPI RGD PMID:10471789 RGD:632913 NCBI chr 4:151,083,262...151,104,464
Ensembl chr 4:151,083,062...151,109,038 		JBrowse link
G Naca nascent polypeptide associated complex subunit alpha enables ISO (PMID:9488445) RGD PMID:9488445 NCBI chr 7:468,862...481,992
Ensembl chr 7:469,723...481,992 		JBrowse link
G Nkx2-1 NK2 homeobox 1 enables IPI PMID:9425125 CAFA PMID:9425125 RGD:12792996 NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791 		JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 enables ISO
IEA		 UniProtKB:P20226 (PMID:19841061)
GO_REF:0000107		 RGD
Ensembl		 PMID:19841061 GO_REF:0000107 NCBI chr18:31,271,681...31,393,320
Ensembl chr18:31,271,681...31,393,375 		JBrowse link
G Nr3c2 nuclear receptor subfamily 3, group C, member 2 enables ISO UniProtKB:P20226 (PMID:20685853) RGD PMID:20685853 NCBI chr19:30,715,634...31,059,885
Ensembl chr19:30,715,648...31,059,885 		JBrowse link
G Psmc1 proteasome 26S subunit, ATPase 1 IPI RGD PMID:10526239 RGD:6771232 NCBI chr 6:119,392,833...119,405,233
Ensembl chr 6:119,392,855...119,410,123 		JBrowse link
G Psmc2 proteasome 26S subunit, ATPase 2 IPI RGD PMID:10526239 RGD:6771232 NCBI chr 4:13,255,850...13,270,160
Ensembl chr 4:13,255,856...13,270,185 		JBrowse link
G Psmc5 proteasome 26S subunit, ATPase 5 IPI RGD PMID:10526239 RGD:6771232 NCBI chr10:91,187,763...91,193,697
Ensembl chr10:91,187,743...91,213,135 		JBrowse link
G Rnf4 ring finger protein 4 IDA Tbp RGD PMID:9710597 RGD:69969 NCBI chr14:76,401,292...76,423,270
Ensembl chr14:76,401,299...76,422,566 		JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 enables ISO (PMID:11080158) RGD PMID:11080158 NCBI chr 4:120,932,486...120,967,400
Ensembl chr 4:120,932,417...121,029,384 		JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 enables ISO (PMID:11080158) RGD PMID:11080158 NCBI chr 1:95,902,014...95,915,247
Ensembl chr 1:95,901,701...95,915,342 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 enables ISO UniProtKB:P53360 (PMID:9660973) RGD PMID:9660973 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543 		JBrowse link
G Taf11 TATA-box binding protein associated factor 11 enables ISO UniProtKB:P20226 (PMID:29111974) RGD PMID:29111974 NCBI chr20:5,955,774...5,963,593
Ensembl chr20:5,955,777...5,961,905 		JBrowse link
G Taf12 TATA-box binding protein associated factor 12 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:144,472,816...144,490,299
Ensembl chr 5:144,472,841...144,488,849 		JBrowse link
G Taf13 TATA-box binding protein associated factor 13 enables ISO UniProtKB:P20226 (PMID:29111974) RGD PMID:29111974 NCBI chr 2:196,205,219...196,215,882
Ensembl chr 2:196,205,243...196,215,878 		JBrowse link
G Thra thyroid hormone receptor alpha enables ISO
IEA		 (PMID:8524305)
GO_REF:0000107		 RGD
Ensembl		 PMID:8524305 GO_REF:0000107 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936 		JBrowse link
G Utf1 undifferentiated embryonic cell transcription factor 1 enables ISO UniProtKB:P29037 (PMID:9748258) RGD PMID:9748258 NCBI chr 1:194,740,339...194,741,465
Ensembl chr 1:194,740,339...194,741,465 		JBrowse link
G Yeats2 YEATS domain containing 2 enables ISO UniProtKB:P20226 (PMID:18838386) RGD PMID:18838386 NCBI chr11:80,743,134...80,829,253
Ensembl chr11:80,743,134...80,829,208 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21010
    binding 18037
      protein binding 14764
        transcription factor binding 663
          general transcription initiation factor binding 65
            TBP-class protein binding 33
paths to the root