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Gene: Rfng (RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Rattus norvegicus

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Symbol:

Rfng

Name:

RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase

RGD ID:

621322

Description:

Predicted to enable O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity. Involved in negative regulation of Notch signaling pathway. Predicted to be located in Golgi membrane. Orthologous to human RFNG (RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase); PARTICIPATES IN Notch signaling pathway; O-linked glycan biosynthetic pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

beta-1,3-N-acetylglucosaminyltransferase radical fringe; O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase; radical fringe gene homolog; radical fringe gene homolog (Drosophila)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	106,545,543 - 106,548,644 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	106,545,543 - 106,548,644 (-)	Ensembl				GRCr8
mRatBN7.2	10	106,047,221 - 106,050,331 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	106,047,221 - 106,050,345 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	111,151,872 - 111,154,259 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	110,614,910 - 110,617,297 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	105,968,336 - 105,970,723 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	109,963,726 - 109,966,821 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	109,943,817 - 109,966,826 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	109,555,216 - 109,558,330 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	10	104,591,668 - 104,594,055 (-)	NCBI		Celera
Cytogenetic Map	10	q32.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Weight Gain (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Bufotalin (ISO)

butan-1-ol (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

captan (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

DDE (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

fenthion (ISO)

folic acid (ISO)

folpet (ISO)

indometacin (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methidathion (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-4-phenylpyridinium (ISO)

nickel dichloride (EXP)

ozone (ISO)

phenobarbital (ISO)

picoxystrobin (ISO)

pirinixic acid (ISO)

quercetin (ISO)

rimonabant (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tebufenpyrad (ISO)

tetrachloroethene (ISO)

thapsigargin (ISO)

triphenyl phosphate (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

negative regulation of Notch signaling pathway (IMP)

nervous system development (IEA)

pattern specification process (IEA)

positive regulation of Notch signaling pathway (ISO)

regulation of Notch signaling pathway (IBA,IEA,ISO,ISS)

Cellular Component

Golgi membrane (IEA)

membrane (IEA)

Molecular Function

glycosyltransferase activity (IEA)

metal ion binding (IEA)

O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity (IBA,IEA,ISO,ISS)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

Notch signaling pathway (IEA,IMP,ISO)

O-linked glycan biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Cell and molecular biology of Notch.	Fiuza UM and Arias AM, J Endocrinol. 2007 Sep;194(3):459-74.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Radical fringe negatively modulates Notch signaling in postmitotic neurons of the rat brain.	Mikami T, etal., Brain Res Mol Brain Res 2001 Jan 31;86(1-2):138-44.
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15574878	PMID:23376485	PMID:28089369

Genomics

Comparative Map Data

Rfng
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	106,545,543 - 106,548,644 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	106,545,543 - 106,548,644 (-)	Ensembl				GRCr8
mRatBN7.2	10	106,047,221 - 106,050,331 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	106,047,221 - 106,050,345 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	111,151,872 - 111,154,259 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	110,614,910 - 110,617,297 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	105,968,336 - 105,970,723 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	109,963,726 - 109,966,821 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	109,943,817 - 109,966,826 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	109,555,216 - 109,558,330 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	10	104,591,668 - 104,594,055 (-)	NCBI		Celera
Cytogenetic Map	10	q32.3	NCBI

RFNG
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	82,047,902 - 82,051,811 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	82,047,902 - 82,051,831 (-)	Ensembl			hg38	GRCh38
GRCh37	17	80,005,778 - 80,009,687 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	77,599,067 - 77,602,939 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	17	77,599,733 - 77,601,719	NCBI
Celera	17	76,599,470 - 76,614,605 (-)	NCBI		Celera
Cytogenetic Map	17	q25.3	NCBI
HuRef	17	75,405,898 - 75,409,770 (-)	NCBI		HuRef
CHM1_1	17	80,091,993 - 80,095,865 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	82,915,060 - 82,918,969 (-)	NCBI		T2T-CHM13v2.0

Rfng
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	120,671,571 - 120,675,077 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	120,671,572 - 120,675,033 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	120,780,745 - 120,784,251 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	120,780,746 - 120,784,207 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	120,642,059 - 120,645,518 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	120,596,835 - 120,600,294 (-)	NCBI		MGSCv36	mm8
Celera	11	132,516,897 - 132,520,471 (-)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	84.53	NCBI

Rfng
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	1,110,220 - 1,112,483 (+)	Ensembl
ChiLan1.0	NW_004955506	1,110,146 - 1,113,130 (+)	NCBI	ChiLan1.0	ChiLan1.0

RFNG
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	98,582,909 - 98,586,953 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	103,483,605 - 103,487,751 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	76,452,440 - 76,456,462 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	82,157,424 - 82,160,947 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

RFNG
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	265,771 - 270,780 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	267,109 - 270,432 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	869,336 - 873,211 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	860,786 - 864,644 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	860,786 - 864,631 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	885,726 - 889,598 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	1,012,628 - 1,016,502 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	1,091,191 - 1,095,050 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rfng
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	853,978 - 858,752 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	5,556,131 - 5,557,371 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936594	5,554,948 - 5,557,981 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RFNG
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	957,127 - 960,822 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	957,129 - 961,757 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RFNG
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	73,949,286 - 73,952,869 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	73,948,919 - 73,952,633 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666077	45,453,524 - 45,493,643 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rfng
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	10,888,052 - 10,890,909 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624801	10,888,052 - 10,890,945 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rfng
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	63,248,651 - 63,251,799 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rfng
16 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	63
Count of miRNA genes:	57
Interacting mature miRNAs:	60
Transcripts:	ENSRNOT00000075041
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	65390777	107713808	Rat
1354641	Bvd2	Brain ventricular dilatation QTL 2	6.36	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	10	93723381	107556066	Rat
8657410	Bp374	Blood pressure QTL 374			heart left ventricle size trait (VT:0002753)	heart left ventricle end-diastolic diameter (CMO:0000982)	10	67476608	107713808	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63719161	107713808	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
12903252	Cm113	Cardiac mass QTL 113		0.047	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68920187	107713808	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	64939013	107713808	Rat
1358915	Stresp7	Stress response QTL 7	3.52		blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	65307813	107713808	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76951790	107713808	Rat
70168	Eae12	Experimental allergic encephalomyelitis QTL 12		0.0009	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	73599825	107713808	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	89039175	107713808	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	54296227	107713808	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61843496	106843496	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70698731	107713808	Rat
12903269	Am15	Aortic mass QTL 15		0.042	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
1576313	Pia25	Pristane induced arthritis QTL 25			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96620293	107713808	Rat
12903266	Cm114	Cardiac mass QTL 114		0.02	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	66817119	107713808	Rat
1578672	Bmd16	Bone mineral density QTL 16	6.2		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	97202388	107556066	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1576307	Cia28	Collagen induced arthritis QTL 28			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96620293	107713808	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62556066	107556066	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1581559	Eae18	Experimental allergic encephalomyelitis QTL 18		0.00002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	66108888	107555881	Rat
12880372	Am12	Aortic mass QTL 12		0.003	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62556066	107556066	Rat
12880375	Kidm66	Kidney mass QTL 66		0.009	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87807758	107713808	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
12880370	Cm105	Cardiac mass QTL 105		0.008	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
12880371	Cm106	Cardiac mass QTL 106		0.007	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
631537	Oia4	Oil induced arthritis QTL 4			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	76128947	107713808	Rat
1300137	Bp186	Blood pressure QTL 186	3.57		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	10	91127270	107556066	Rat
634354	Rends3	Renal damage susceptibility QTL 3		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	10	61997479	106997479	Rat
61436	Cia5	Collagen induced arthritis QTL 5	4.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	91727883	107713808	Rat
11565453	Kidm58	Kidney mass QTL 58		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
2301405	Cm69	Cardiac mass QTL 69		0.031	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
1578663	Bss18	Bone structure and strength QTL 18	3.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	10	97202388	107556066	Rat

Markers in Region

RH141114

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	106,047,321 - 106,047,504 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	109,963,827 - 109,964,009	NCBI	Rnor6.0
Rnor_5.0	10	109,555,317 - 109,555,499	UniSTS	Rnor5.0
Celera	10	104,591,101 - 104,591,283	UniSTS
RH 3.4 Map	5	108.1	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_021849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB016486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC062031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000075041 ⟹ ENSRNOP00000067562

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	106,545,544 - 106,548,643 (-)	Ensembl
mRatBN7.2 Ensembl	10	106,047,221 - 106,050,337 (-)	Ensembl
Rnor_6.0 Ensembl	10	109,963,727 - 109,966,826 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078052 ⟹ ENSRNOP00000073554

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	106,545,543 - 106,548,644 (-)	Ensembl
mRatBN7.2 Ensembl	10	106,047,221 - 106,050,345 (-)	Ensembl
Rnor_6.0 Ensembl	10	109,943,817 - 109,966,782 (-)	Ensembl

RefSeq Acc Id:

NM_021849 ⟹ NP_068621

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	106,545,543 - 106,548,644 (-)	NCBI
mRatBN7.2	10	106,047,221 - 106,050,322 (-)	NCBI
Rnor_6.0	10	109,964,394 - 109,966,781 (-)	NCBI
Rnor_5.0	10	109,555,216 - 109,558,330 (-)	NCBI
Celera	10	104,591,668 - 104,594,055 (-)	RGD

Sequence:

show sequence

ATGAGCCGTGTGCGGCGAGTGCTGTGCCGGGCCTGCCTCGCGCTGGCCGCGGTCCTGGCTGTGT
TGCTGCTACTACCGCTGCCGCTACCACTACCGCTGCCGCTGCCTCGCGCTCCCGCACCAGACCC
AGGTCGTGTCCCGACCGGGAGCCTGACCCTCGAGGTCTCCCGCCTGCAACCGGACGACGTCTTC
ATTGCAGTCAAGACCACTCGGAAGAACCACGGCCCGCGCCTGCGCCTGCTGTTGCGTACCTGGA
TCTCACGAGCCCCACGGCAGACGTTCATTTTCACCGATGGAGACGACCCTGAGCTCCAGCTGCT
GGCAGGCAGCCAAATGATCAACACCAATTGTTCCGCTGTGCGAACCCGCCAGGCGCTGTGCTGT
AAGATGTCAGTGGAGTATGACAAGTTCATAGAGTCTGGACGGAAATGGTTCTGCCACGTGGATG
ATGACAACTACGTGAACCCCAAAAGCCTGCTGCACCTGCTTTCCACCTTCTCTTCCAACCAGGA
CATCTACCTGGGGCGACCTAGTCTGGACCACCCCATCGAAGCCACAGAGAGGGTCCAGGGCGGT
GGCACCTCAAACACAGTGAAATTCTGGTTTGCTACTGGTGGGGCTGGGTTCTGCCTGAGCAGGG
GCCTTGCCCTCAAAATGAGCCCGTGGGCCAGCCTAGGCAGTTTCATGAGCACAGCAGAACGGGT
TCGACTGCCTGACGACTGCACGGTGGGATACATTGTGGAAGGGCTCCTGGGTGCCCGTCTGCTT
CATAGCCCCCTGTTCCACTCCCACCTGGAGAACTTGCAGAAGCTGCCATCTGGTGCTGTTCTGC
AGCAGGTTACCCTGAGCTATGGGGGTCCTGAGAACCCGCACAACGTGGTGAATGTAGCTGGAAG
TTTCAGCATTCGACAGGACCCTACACGGTTTCAGTCAGTGCACTGCCTTCTCTACCCAGACACC
CACTGGTGTCCTATGAAAAACAGGGGTAAGGAAGCTTTTCAGTAA

hide sequence

RefSeq Acc Id:

XM_006247910 ⟹ XP_006247972

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	106,545,543 - 106,548,598 (-)	NCBI
mRatBN7.2	10	106,047,221 - 106,050,331 (-)	NCBI
Rnor_6.0	10	109,963,726 - 109,966,821 (-)	NCBI
Rnor_5.0	10	109,555,216 - 109,558,330 (-)	NCBI

Sequence:

show sequence

ATCGCAGGCGGGCGCCCAGCGCCCGGGCCTGGGCGATCGCATGAGCCGTGTGCGGCGAGTGCTG
TGCCGGGCCTGCCTCGCGCTGGCCGCGGTCCTGGCTGTGTTGCTGCTACTACCGCTGCCGCTAC
CACTACCGCTGCCGCTGCCTCGCGCTCCCGCACCAGACCCAGGTCGTGTCCCGACCGGGAGCTT
GACCCTCGAGGTCTCCCGCCTGCAACCGGACGACGTCTTCATTGCAGTCAAGACCACTCGGAAG
AACCACGGCCCGCGCCTGCGGCTGCTGTTGCGTACCTGGATCTCACGAGCCCCACGGCAGACGT
TCATTTTCACCGATGGAGACGACCCTGAGCTCCAGCTGCTGGCAGGCAGCCAAATGATCAACAC
CAATTGTTCCGCTGTGCGAACCCGCCAGGCGCTGTGCTGTAAGATGTCAGTGGAGTATGACAAG
TTCATAGAGTCTGGACGGAAATGGTTCTGCCACGTGGATGATGACAACTACGTGAACCCCAAAA
GCCTGCTGCACCTGCTTTCCACCTTCTCTTCCAACCAGGACATCTACCTGGGGCGACCTAGTCT
GGACCACCCCATCGAAGCCACAGAGAGGGTCCAGGGCGGTGGCACCTCAAACACAGTGAAATTC
TGGTTTGCTACTGGTGGGGCTGGGTTCTGCCTGAGCAGGGGCCTTGCCCTCAAAATGAGCCCGT
GGGCCAGCCTAGGCAGTTTCATGAGCACAGCAGAACGGGTTCGACTGCCTGACGACTGCACGGT
GGGATACATTGTGGAAGGGCTCCTGGGTGCCCGTCTGCTTCATAGCCCCCTGTTCCACTCCCAC
CTGGAGAACTTGCAGAAGCTGCCGTCTGGTGCTGTTCTGCAGCAGGTTACCCTGAGCTATGGGG
GTCCTGAGAACCCGCACAACGTGGTGAATGTAGCTGGAAGTTTCAGCATTCGACAGGACCCTAC
ACGGTTTCAGTCAGTGCACTGCCTTCTCTACCCAGACACCCACTGGTGTCCTATGAAGAACAGG
GGTACCTTGGGAAAATGAGACAACCGGGCTGTGCCTGCTGAGATCATCCAGGAAGAGAGAGAAG
GGCCAAGCTGCTGAGACATTGACGCCTCTAGCCAAGCCCAGAGGTCCTTCTCGTGGATAAGGTC
TACTACCCCAGCTACCCCATGACTGTGGCCCAGGAGGGGACTGGTTCCCAGCCTCCCACAGCTG
CAGCCTGTCCTCGACTGCAGAAGATGGTGCCAACGGGTTGGCCATTAAGGGGTGGGCTTCAGAC
CTGGCCACTGGCTCTTGCTGGAGGGCTCAAAGAGCTACCACTAAAGCCAGAATGCTCAGACTGT
GTGGCCGGTGGACACTGAGGACCAGCTTCAAGGCTGTGCTCCCACGCAGGGCTGTTGTTCTTCC
ATTACCCCCATCCTTCCTCTAACCTGGTATTCAGGATGCTTCCCCTCTGAGCTTCCCATCACTA
GAGCCTCTCCTTTGGGCTCCTCAGGAGCAAGATGCAGGCCCATCAGCTTTTACAGGGGTTCCCC
ATGGGGAAGTGGTTACAGTGTTGTTGAGTAAAGGCTTGTCATTCTTA

hide sequence

RefSeq Acc Id:

XM_008768480 ⟹ XP_008766702

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	106,545,543 - 106,548,598 (-)	NCBI
mRatBN7.2	10	106,047,221 - 106,050,316 (-)	NCBI
Rnor_6.0	10	109,963,726 - 109,966,821 (-)	NCBI

Sequence:

show sequence

ATCGCAGGCGGGCGCCCAGCGCCCGGGCCTGGGCGATCGCATGAGCCGTGTGCGGCGAGTGCTG
TGCCGGGCCTGCCTCGCGCTGGCCGCGGTCCTGGCTGTGTTGCTGCTACTACCGCTGCCGCTAC
CACTACCGCTGCCGCTGCCTCGCGCTCCCGCACCAGACCCAGGTCGTGTCCCGACCGGGAGCTT
GACCCTCGAGGTCTCCCGCCTGCAACCGGACGACGTCTTCATTGCAGTCAAGACCACTCGGAAG
AACCACGGCCCGCGCCTGCGGCTGCTGTTGCGTACCTGGATCTCACGAGCCCCACGGCAGACGT
TCATTTTCACCGATGGAGACGACCCTGAGCTCCAGCTGCTGGCAGGCAGCCAAATGATCAACAC
CAATTGTTCCGCTGTGCGAACCCGCCAGGCGCTGTGCTGTAAGATGTCAGTGGAGTATGACAAG
TTCATAGAGTCTGGACGGAAATGGTTCTGCCACGTGGATGATGACAACTACGTGAACCCCAAAA
GCCTGCTGCACCTGCTTTCCACCTTCTCTTCCAACCAGGACATCTACCTGGGGCGACCTAGTCT
GGACCACCCCATCGAAGCCACAGAGAGGGTCCAGGGCGGTGGCACCTCAAACACAGTGAAATTC
TGGTTTGCTACTGGTGGGGCTGGGTTCTGCCTGAGCAGGGGCCTTGCCCTCAAAATGAGCCCGT
GGGCCAGCCTAGGCAGTTTCATGAGCACAGCAGAACGGGTTCGACTGCCTGACGACTGCACGGT
GGGATACATTGTGGAAGGGCTCCTGGGTGCCCGTCTGCTTCATAGCCCCCTGTTCCACTCCCAC
CTGGAGAACTTGCAGAAGCTGCCGTCTGGTGCTGTTCTGCAGCAGCAGGTGGAGGACCCAGGAG
GAAGAACTGACCCTCACCCTCCCCGGTTCCCCTCCCAGGTTACCCTGAGCTATGGGGGTCCTGA
GAACCCGCACAACGTGGTGAATGTAGCTGGAAGTTTCAGCATTCGACAGGACCCTACACGGTTT
CAGTCAGTGCACTGCCTTCTCTACCCAGACACCCACTGGTGTCCTATGAAGAACAGGGGTACCT
TGGGAAAATGAGACAACCGGGCTGTGCCTGCTGAGATCATCCAGGAAGAGAGAGAAGGGCCAAG
CTGCTGAGACATTGACGCCTCTAGCCAAGCCCAGAGGTCCTTCTCGTGGATAAGGTCTACTACC
CCAGCTACCCCATGACTGTGGCCCAGGAGGGGACTGGTTCCCAGCCTCCCACAGCTGCAGCCTG
TCCTCGACTGCAGAAGATGGTGCCAACGGGTTGGCCATTAAGGGGTGGGCTTCAGACCTGGCCA
CTGGCTCTTGCTGGAGGGCTCAAAGAGCTACCACTAAAGCCAGAATGCTCAGACTGTGTGGCCG
GTGGACACTGAGGACCAGCTTCAAGGCTGTGCTCCCACGCAGGGCTGTTGTTCTTCCATTACCC
CCATCCTTCCTCTAACCTGGTATTCAGGATGCTTCCCCTCTGAGCTTCCCATCACTAGAGCCTC
TCCTTTGGGCTCCTCAGGAGCAAGATGCAGGCCCATCAGCTTTTACAGGGGTTCCCCATGGGGA
AGTGGTTACAGTGTTGTTGAGTAAAGGCTTGTCATTCTTA

hide sequence

RefSeq Acc Id:

XM_008768481 ⟹ XP_008766703

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	106,545,543 - 106,548,598 (-)	NCBI
mRatBN7.2	10	106,047,221 - 106,050,316 (-)	NCBI
Rnor_6.0	10	109,963,726 - 109,966,821 (-)	NCBI

Sequence:

show sequence

ATCGCAGGCGGGCGCCCAGCGCCCGGGCCTGGGCGATCGCATGAGCCGTGTGCGGCGAGTGCTG
TGCCGGGCCTGCCTCGCGCTGGCCGCGGTCCTGGCTGTGTTGCTGCTACTACCGCTGCCGCTAC
CACTACCGCTGCCGCTGCCTCGCGCTCCCGCACCAGACCCAGGTCGTGTCCCGACCGGGAGCTT
GACCCTCGAGGTCTCCCGCCTGCAACCGGACGACGTCTTCATTGCAGTCAAGACCACTCGGAAG
AACCACGGCCCGCGCCTGCGGCTGCTGTTGCGTACCTGGATCTCACGAGCCCCACGGCAGACGT
TCATTTTCACCGATGGAGACGACCCTGAGCTCCAGCTGCTGGCAGGCAGCCAAATGATCAACAC
CAATTGTTCCGCTGTGCGAACCCGCCAGGCGCTGTGCTGTAAGATGTCAGTGGAGTATGACAAG
TTCATAGAGTCTGGACGGAAATGGTTCTGCCACGTGGATGATGACAACTACGTGAACCCCAAAA
GCCTGCTGCACCTGCTTTCCACCTTCTCTTCCAACCAGGACATCTACCTGGGGCGACCTAGTCT
GGACCACCCCATCGAAGCCACAGAGAGGGTCCAGGGCGGTGGCACCTCAAACACAGTGAAATTC
TGGTTTGCTACTGGTGGGGCTGGGTTCTGCCTGAGCAGGGGCCTTGCCCTCAAAATGAGCCCGT
GGGCCAGCCTAGGCAGTTTCATGAGCACAGCAGAACGGGTTCGACTGCCTGACGACTGCACGGT
GGGATACATTGTGGAAGGGCTCCTGGGTGCCCGTCTGCTTCATAGCCCCCTGTTCCACTCCCAC
CTGGAGAACTTGCAGAAGCTGCCGTCTGGTGCTGTTCTGCAGCAGCAGGTGGAGGACCCAGGAG
GAAGAACTGACCCTCACCCTCCCCGGTTCCCCTCCCAGGTTACCCTGAGCTATGGGGGTCCTGA
GAACCCGCACAACGTGGTGAATGTAGCTGGAAGTTTCAGCATTCGACAGGACCCTACACGGTTT
CAGTCAGTGCACTGCCTTCTCTACCCAGACACCCACTGGTGTCCTATGAAGAACAGGGGTAAGG
AAGCTTTTCAGTAACTGGTGACCCCCGGTGGCTGCTTTACCTGGCTCCCTCAGGCCTTGGATTC
AGGCAGTCAGCAGAAGCTGCTTGAAGGCCTCCCATGACCTCGGTCCTGGTTGGACACCAGGTAC
CTTGGGAAAATGAGACAACCGGGCTGTGCCTGCTGAGATCATCCAGGAAGAGAGAGAAGGGCCA
AGCTGCTGAGACATTGACGCCTCTAGCCAAGCCCAGAGGTCCTTCTCGTGGATAAGGTCTACTA
CCCCAGCTACCCCATGACTGTGGCCCAGGAGGGGACTGGTTCCCAGCCTCCCACAGCTGCAGCC
TGTCCTCGACTGCAGAAGATGGTGCCAACGGGTTGGCCATTAAGGGGTGGGCTTCAGACCTGGC
CACTGGCTCTTGCTGGAGGGCTCAAAGAGCTACCACTAAAGCCAGAATGCTCAGACTGTGTGGC
CGGTGGACACTGAGGACCAGCTTCAAGGCTGTGCTCCCACGCAGGGCTGTTGTTCTTCCATTAC
CCCCATCCTTCCTCTAACCTGGTATTCAGGATGCTTCCCCTCTGAGCTTCCCATCACTAGAGCC
TCTCCTTTGGGCTCCTCAGGAGCAAGATGCAGGCCCATCAGCTTTTACAGGGGTTCCCCATGGG
GAAGTGGTTACAGTGTTGTTGAGTAAAGGCTTGTCATTCTTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_068621	(Get FASTA)	NCBI Sequence Viewer
	XP_006247972	(Get FASTA)	NCBI Sequence Viewer
	XP_008766702	(Get FASTA)	NCBI Sequence Viewer
	XP_008766703	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH62031	(Get FASTA)	NCBI Sequence Viewer
	BAA82742	(Get FASTA)	NCBI Sequence Viewer
	EDM06898	(Get FASTA)	NCBI Sequence Viewer
	EDM06899	(Get FASTA)	NCBI Sequence Viewer
	EDM06900	(Get FASTA)	NCBI Sequence Viewer
	EDM06901	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000067562
	ENSRNOP00000073554
GenBank Protein	Q9R1U9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_068621 ⟸ NM_021849

- UniProtKB:

Q9R1U9 (UniProtKB/Swiss-Prot), A6HLJ5 (UniProtKB/TrEMBL), A6HLJ4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSRVRRVLCRACLALAAVLAVLLLLPLPLPLPLPLPRAPAPDPGRVPTGSLTLEVSRLQPDDVF
IAVKTTRKNHGPRLRLLLRTWISRAPRQTFIFTDGDDPELQLLAGSQMINTNCSAVRTRQALCC
KMSVEYDKFIESGRKWFCHVDDDNYVNPKSLLHLLSTFSSNQDIYLGRPSLDHPIEATERVQGG
GTSNTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVEGLLGARLL
HSPLFHSHLENLQKLPSGAVLQQVTLSYGGPENPHNVVNVAGSFSIRQDPTRFQSVHCLLYPDT
HWCPMKNRGKEAFQ

hide sequence

RefSeq Acc Id:	XP_006247972 ⟸ XM_006247910
- Peptide Label:	isoform X2
- UniProtKB:	Q6P6T7 (UniProtKB/TrEMBL), A6HLJ3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRVRRVLCRACLALAAVLAVLLLLPLPLPLPLPLPRAPAPDPGRVPTGSLTLEVSRLQPDDVF IAVKTTRKNHGPRLRLLLRTWISRAPRQTFIFTDGDDPELQLLAGSQMINTNCSAVRTRQALCC KMSVEYDKFIESGRKWFCHVDDDNYVNPKSLLHLLSTFSSNQDIYLGRPSLDHPIEATERVQGG GTSNTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVEGLLGARLL HSPLFHSHLENLQKLPSGAVLQQVTLSYGGPENPHNVVNVAGSFSIRQDPTRFQSVHCLLYPDT HWCPMKNRGTLGK hide sequence

RefSeq Acc Id:	XP_008766702 ⟸ XM_008768480
- Peptide Label:	isoform X1
- UniProtKB:	M0RD65 (UniProtKB/TrEMBL), A6HLJ3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRVRRVLCRACLALAAVLAVLLLLPLPLPLPLPLPRAPAPDPGRVPTGSLTLEVSRLQPDDVF IAVKTTRKNHGPRLRLLLRTWISRAPRQTFIFTDGDDPELQLLAGSQMINTNCSAVRTRQALCC KMSVEYDKFIESGRKWFCHVDDDNYVNPKSLLHLLSTFSSNQDIYLGRPSLDHPIEATERVQGG GTSNTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVEGLLGARLL HSPLFHSHLENLQKLPSGAVLQQQVEDPGGRTDPHPPRFPSQVTLSYGGPENPHNVVNVAGSFS IRQDPTRFQSVHCLLYPDTHWCPMKNRGTLGK hide sequence

RefSeq Acc Id:	XP_008766703 ⟸ XM_008768481
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2K5T8 (UniProtKB/TrEMBL), A6HLJ4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSRVRRVLCRACLALAAVLAVLLLLPLPLPLPLPLPRAPAPDPGRVPTGSLTLEVSRLQPDDVF IAVKTTRKNHGPRLRLLLRTWISRAPRQTFIFTDGDDPELQLLAGSQMINTNCSAVRTRQALCC KMSVEYDKFIESGRKWFCHVDDDNYVNPKSLLHLLSTFSSNQDIYLGRPSLDHPIEATERVQGG GTSNTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVEGLLGARLL HSPLFHSHLENLQKLPSGAVLQQQVEDPGGRTDPHPPRFPSQVTLSYGGPENPHNVVNVAGSFS IRQDPTRFQSVHCLLYPDTHWCPMKNRGKEAFQ hide sequence

Ensembl Acc Id:

ENSRNOP00000067562 ⟸ ENSRNOT00000075041

Ensembl Acc Id:

ENSRNOP00000073554 ⟸ ENSRNOT00000078052

Protein Domains

Fringe-like glycosyltransferase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9R1U9-F1-model_v2	AlphaFold	Q9R1U9	1-334	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697981

Promoter ID:

EPDNEW_R8501

Type:

initiation region

Name:

Rfng_1

Description:

RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	109,966,808 - 109,966,868	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621322	AgrOrtholog
BioCyc Gene	G2FUF-22385	BioCyc
Ensembl Genes	ENSRNOG00000050298	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000075041	ENTREZGENE
	ENSRNOT00000078052	ENTREZGENE
Gene3D-CATH	3.90.550.50	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:5623611	IMAGE-MGC_LOAD
InterPro	Fringe	UniProtKB/Swiss-Prot
	Fringe-like	UniProtKB/Swiss-Prot
KEGG Report	rno:60433	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:72458	IMAGE-MGC_LOAD
NCBI Gene	60433	ENTREZGENE
PANTHER	FRINGE-RELATED	UniProtKB/Swiss-Prot
Pfam	Fringe	UniProtKB/Swiss-Prot
PhenoGen	Rfng	PhenoGen
PIRSF	B-acetylgalactosaminyltfrase	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000050298	RatGTEx
UniProt	A0A0G2K5T8	ENTREZGENE, UniProtKB/TrEMBL
	A6HLJ3	ENTREZGENE, UniProtKB/TrEMBL
	A6HLJ4	ENTREZGENE, UniProtKB/TrEMBL
	A6HLJ5	ENTREZGENE, UniProtKB/TrEMBL
	A6HLJ6_RAT	UniProtKB/TrEMBL
	M0RD65	ENTREZGENE, UniProtKB/TrEMBL
	Q6P6T7	ENTREZGENE, UniProtKB/TrEMBL
	Q9R1U9	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-12-08	Rfng	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	Rfng	radical fringe gene homolog (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Rfng	radical fringe gene homolog (Drosophila)		radical fringe gene homolog	Name updated	1299863	APPROVED
2002-08-07	Rfng	radical fringe gene homolog			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in most neurons but not in glial cells	633801
gene_protein	334 amino acids	633801

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - KEGG (archival)