Sema3d (semaphorin 3D) - Rat Genome Database

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Gene: Sema3d (semaphorin 3D) Rattus norvegicus
Analyze
Symbol: Sema3d
Name: semaphorin 3D
RGD ID: 727939
Description: Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including axon guidance; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be active in extracellular space and plasma membrane. Orthologous to human SEMA3D (semaphorin 3D); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC246262; sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D; semaphorin homolog of the avian Sema3D; semaphorin, homolog of the avian Sema3D; semaphorin-3D
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8423,271,815 - 23,460,971 (-)NCBIGRCr8
mRatBN7.2422,316,769 - 22,505,930 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl422,316,779 - 22,505,930 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx427,324,703 - 27,511,651 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0423,250,906 - 23,437,865 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0421,624,497 - 21,811,446 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0419,224,378 - 19,413,519 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl419,224,310 - 19,413,484 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0419,169,059 - 19,359,164 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4418,641,725 - 18,832,339 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1418,657,541 - 18,695,693 (-)NCBI
Celera417,832,750 - 18,021,791 (-)NCBICelera
Cytogenetic Map4q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19345252   PMID:19429098   PMID:24006456   PMID:30361391  


Genomics

Comparative Map Data
Sema3d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8423,271,815 - 23,460,971 (-)NCBIGRCr8
mRatBN7.2422,316,769 - 22,505,930 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl422,316,779 - 22,505,930 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx427,324,703 - 27,511,651 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0423,250,906 - 23,437,865 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0421,624,497 - 21,811,446 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0419,224,378 - 19,413,519 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl419,224,310 - 19,413,484 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0419,169,059 - 19,359,164 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4418,641,725 - 18,832,339 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1418,657,541 - 18,695,693 (-)NCBI
Celera417,832,750 - 18,021,791 (-)NCBICelera
Cytogenetic Map4q12NCBI
SEMA3D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38784,995,553 - 85,250,243 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl784,995,553 - 85,187,056 (-)EnsemblGRCh38hg38GRCh38
GRCh37784,624,869 - 84,879,559 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36784,462,805 - 84,589,183 (-)NCBINCBI36Build 36hg18NCBI36
Build 34784,269,521 - 84,395,898NCBI
Celera779,328,907 - 79,455,300 (-)NCBICelera
Cytogenetic Map7q21.11NCBI
HuRef779,234,320 - 79,360,917 (-)NCBIHuRef
CHM1_1784,555,054 - 84,681,432 (-)NCBICHM1_1
T2T-CHM13v2.0786,245,383 - 86,500,064 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2783,956,759 - 84,083,147 (-)NCBI
Sema3d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39512,433,133 - 12,638,920 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl512,433,352 - 12,638,915 (+)EnsemblGRCm39 Ensembl
GRCm38512,383,161 - 12,588,953 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl512,383,385 - 12,588,948 (+)EnsemblGRCm38mm10GRCm38
MGSCv37512,383,166 - 12,588,943 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36512,389,562 - 12,593,064 (+)NCBIMGSCv36mm8
Celera1222,750,770 - 22,952,639 (+)NCBICelera
Cytogenetic Map5A1NCBI
cM Map53.97NCBI
Sema3d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554101,400,839 - 1,498,172 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554101,356,787 - 1,510,394 (+)NCBIChiLan1.0ChiLan1.0
SEMA3D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26102,851,559 - 103,042,950 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17151,115,741 - 151,307,498 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0776,964,151 - 77,155,472 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1790,624,393 - 90,750,389 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl790,624,398 - 90,750,389 (-)Ensemblpanpan1.1panPan2
SEMA3D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11824,254,113 - 24,429,767 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1824,262,125 - 24,394,155 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1823,932,740 - 24,149,080 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01824,708,889 - 24,925,861 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1824,719,837 - 24,925,292 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11824,357,283 - 24,573,713 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01823,871,664 - 24,088,431 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01824,538,712 - 24,755,683 (-)NCBIUU_Cfam_GSD_1.0
Sema3d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511865,778,860 - 65,961,152 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936789933,877 - 1,053,566 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936789872,760 - 1,053,606 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEMA3D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl995,280,593 - 95,486,090 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1995,280,637 - 95,486,109 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29105,461,182 - 105,525,530 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEMA3D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12163,794,289 - 63,923,280 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2163,794,281 - 63,919,352 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604240,083,998 - 40,246,334 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sema3d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473932,981,101 - 33,086,376 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473932,981,158 - 33,143,250 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sema3d
1237 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:719
Count of miRNA genes:282
Interacting mature miRNAs:369
Transcripts:ENSRNOT00000009489
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4127716890Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4127716890Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4127716890Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4129494328Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4130372989Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4131934116Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4131934116Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
1358201Gluco12Glucose level QTL121.6adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake (CMO:0000870)4521839229593287Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat

Markers in Region
D4Wox32  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2422,506,277 - 22,506,432 (+)MAPPERmRatBN7.2
Rnor_6.0419,413,867 - 19,414,021NCBIRnor6.0
Rnor_5.0419,359,512 - 19,359,666UniSTSRnor5.0
RGSC_v3.4418,832,687 - 18,832,841UniSTSRGSC3.4
Celera418,022,139 - 18,022,293UniSTS
Cytogenetic Map4q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 14 6 6 11 6 4 27 24 7
Low 3 28 48 33 7 33 8 9 70 8 12 4 8
Below cutoff 1 3 2 1 2 1 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000009489   ⟹   ENSRNOP00000009489
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl422,316,779 - 22,505,930 (-)Ensembl
Rnor_6.0 Ensembl419,224,310 - 19,413,484 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095479   ⟹   ENSRNOP00000079868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl422,324,816 - 22,442,248 (-)Ensembl
RefSeq Acc Id: NM_001104633   ⟹   NP_001098103
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8423,271,815 - 23,460,971 (-)NCBI
mRatBN7.2422,316,769 - 22,505,930 (-)NCBI
Rnor_6.0419,224,378 - 19,413,519 (-)NCBI
Rnor_5.0419,169,059 - 19,359,164 (-)NCBI
RGSC_v3.4418,641,725 - 18,832,339 (-)RGD
Celera417,832,750 - 18,021,791 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001098103 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF76329 (Get FASTA)   NCBI Sequence Viewer  
  BAF76035 (Get FASTA)   NCBI Sequence Viewer  
  EDL84297 (Get FASTA)   NCBI Sequence Viewer  
  EDL84298 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000009489
  ENSRNOP00000009489.5
  ENSRNOP00000079868.1
Reference Protein Sequences
RefSeq Acc Id: NP_001098103   ⟸   NM_001104633
- UniProtKB: F1MAG8 (UniProtKB/TrEMBL),   A7M6E9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000009489   ⟸   ENSRNOT00000009489
RefSeq Acc Id: ENSRNOP00000079868   ⟸   ENSRNOT00000095479
Protein Domains
Ig-like   Sema

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1MAG8-F1-model_v2 AlphaFold F1MAG8 1-777 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727939 AgrOrtholog
BioCyc Gene G2FUF-45864 BioCyc
Ensembl Genes ENSRNOG00000007202 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009489 ENTREZGENE
  ENSRNOT00000009489.7 UniProtKB/TrEMBL
  ENSRNOT00000095479.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  ligand-binding face of the semaphorins, domain 2 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  IL-1RAcP-like_ig UniProtKB/TrEMBL
  Plexin-like_fold UniProtKB/TrEMBL
  Sema3D_Sema UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/TrEMBL
  Semaphorin UniProtKB/TrEMBL
  Semaphorin/CD100_Ag UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
KEGG Report rno:246262 UniProtKB/TrEMBL
NCBI Gene 246262 ENTREZGENE
PANTHER PTHR11036 UniProtKB/TrEMBL
  SEMAPHORIN-3D UniProtKB/TrEMBL
Pfam Ig_6 UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
PhenoGen Sema3d PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
  SEMA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007202 RatGTEx
SMART PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP Plexin repeat UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A0A8I5ZP10_RAT UniProtKB/TrEMBL
  A6K215_RAT UniProtKB/TrEMBL
  A6K216_RAT UniProtKB/TrEMBL
  A7M6E9 ENTREZGENE, UniProtKB/TrEMBL
  F1MAG8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-21 Sema3d  semaphorin 3D  Sema3d  sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Sema3d  sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D  LOC246262  semaphorin 3D  Symbol and Name updated 1299863 APPROVED