LOC120098674 (small nucleolar RNA SNORA72) - Rat Genome Database

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Gene: LOC120098674 (small nucleolar RNA SNORA72) Rattus norvegicus
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Symbol: LOC120098674
Name: small nucleolar RNA SNORA72
RGD ID: 41376102
Description: Predicted to be involved in RNA processing. Predicted to be located in nucleolus.
Type: snorna
RefSeq Status: MODEL
Previously known as: SNORA72
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81966,677,750 - 66,677,852 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1966,677,750 - 66,677,852 (+)EnsemblGRCr8
mRatBN7.21949,769,138 - 49,769,240 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1949,769,138 - 49,769,240 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl1954,528,505 - 54,528,607 (+)NCBIrn6Rnor6.0
Cytogenetic Map19q12NCBI
JBrowse:




References

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)194622677874246245Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)192409397369093973Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
2303628Vencon9Ventilatory control QTL 90.005respiration trait (VT:0001943)minute ventilation (CMO:0000132)192318858668188586Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194438513474246245Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)196124916174246245Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
1554318Bmd5Bone mineral density QTL 512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)192318858668188586Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)194172254674246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005497098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000087507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1966,677,750 - 66,677,852 (+)Ensembl
mRatBN7.2 Ensembl1949,769,138 - 49,769,240 (+)Ensembl
RefSeq Acc Id: XR_005497098
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,677,750 - 66,677,852 (+)NCBI
mRatBN7.21949,769,138 - 49,769,240 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-5419 BioCyc
Ensembl Genes ENSRNOG00000054434 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000087507 ENTREZGENE
NCBI Gene LOC120098674 ENTREZGENE
PhenoGen LOC120098674 PhenoGen
RatGTEx ENSRNOG00000054434 RatGTEx
RNAcentral URS00006A1245 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120098674  small nucleolar RNA SNORA72  SNORA72  Small nucleolar RNA SNORA72  Data merged from RGD:15008674 737654 PROVISIONAL
2021-01-27 LOC120098674  small nucleolar RNA SNORA72      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 SNORA72  Small nucleolar RNA SNORA72      Symbol and Name status set to provisional 45752 PROVISIONAL