Bmd5 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bmd5 (Bone mineral density QTL 5) Rattus norvegicus

Symbol: Bmd5
Name: Bone mineral density QTL 5
RGD ID: 1554318
Trait: lumbar vertebra mineral mass   (VT:0010511)    
Measurement Type: volumetric bone mineral density   (CMO:0001553)    
LOD Score: 12.1
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81923,188,586 - 68,188,586RGD_MAPPER_PIPELINE
Rnor_5.01920,855,340 - 65,855,340RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4198,121,935 - 53,121,935RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.1198,126,761 - 53,126,761RGD
Cross Type: Not Available
Strains Crossed: F344 LEW 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Vertebrate Trait

Rat Strain
F344  (IEA)
LEW  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genome screen for bone mineral density phenotypes in Fisher 344 and Lewis rat strains. Koller DL, etal., Mamm Genome 2005 Aug;16(8):578-86. Epub 2005 Sep 14.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Peak: (D19Rat25)
Rat AssemblyChrPosition (strand)Source
GRCr81945,688,530 - 45,688,643 (+)Marker Load Pipeline
Rnor_5.01943,355,283 - 43,355,397NCBI
RGSC_v3.41930,621,879 - 30,621,992RGD
RGSC_v3.11930,626,705 - 30,626,818RGD
RH 2.0 Map19313.9RGD
SHRSP x BN Map1920.2599RGD
FHH x ACI Map1922.22RGD
Cytogenetic Map19 RGD


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_statistics_details MAPMAKER/EXP used for linkage analysis 1553896
qtl_statistics_details LOD:5.3 spine vBMD by pQCT 1553896