LOC120098859 (uncharacterized LOC120098859) - Rat Genome Database

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Gene: LOC120098859 (uncharacterized LOC120098859) Rattus norvegicus
Analyze
Symbol: LOC120098859
Name: uncharacterized LOC120098859
RGD ID: 41239998
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,588,846 - 5,612,765 (-)NCBIGRCr8
mRatBN7.2205,587,000 - 5,602,500 (-)NCBImRatBN7.2mRatBN7.2
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC120098859
136 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2046066076691706Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126123605Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124159021Rat
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20460660717617956Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362164910078919Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036216499243559Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20460660717617956Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20362165614101050Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XR_005497514
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,588,846 - 5,612,765 (-)NCBI
mRatBN7.2205,587,000 - 5,602,500 (-)NCBI
RefSeq Acc Id: XR_005497515
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,588,846 - 5,612,765 (-)NCBI
mRatBN7.2205,587,000 - 5,602,500 (-)NCBI
RefSeq Acc Id: XR_005497516
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,588,846 - 5,612,765 (-)NCBI
mRatBN7.2205,587,000 - 5,602,500 (-)NCBI
RefSeq Acc Id: XR_005497517
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,588,846 - 5,612,765 (-)NCBI
mRatBN7.2205,587,000 - 5,602,500 (-)NCBI
RefSeq Acc Id: XR_010060983
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,588,846 - 5,612,765 (-)NCBI
RefSeq Acc Id: XR_010060984
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,588,846 - 5,612,765 (-)NCBI
RefSeq Acc Id: XR_010060986
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,588,846 - 5,612,765 (-)NCBI
RefSeq Acc Id: XR_010060987
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,588,846 - 5,612,765 (-)NCBI
RefSeq Acc Id: XR_010060988
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,588,846 - 5,612,765 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-4467 BioCyc
NCBI Gene LOC120098859 ENTREZGENE
PhenoGen LOC120098859 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120098859  uncharacterized LOC120098859      Symbol and Name status set to provisional 70820 PROVISIONAL