Cngb1 (cyclic nucleotide gated channel subunit beta 1) - Rat Genome Database

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Gene: Cngb1 (cyclic nucleotide gated channel subunit beta 1) Heterocephalus glaber
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Symbol: Cngb1
Name: cyclic nucleotide gated channel subunit beta 1
RGD ID: 18932413
Description: ENCODES a protein that exhibits cAMP binding (ortholog); intracellularly cAMP-activated cation channel activity (ortholog); intracellularly cGMP-activated cation channel activity (ortholog); INVOLVED IN calcium ion transport (ortholog); detection of chemical stimulus involved in sensory perception of smell (ortholog); detection of light stimulus involved in visual perception (ortholog); PARTICIPATES IN altered visual phototransduction pathway; calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH fundus dystrophy (ortholog); genetic disease (ortholog); optic atrophy (ortholog); FOUND IN intracellular cyclic nucleotide activated cation channel complex (ortholog); non-motile cilium membrane (ortholog); rod photoreceptor outer segment (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclic nucleotide gated channel beta 1; cyclic nucleotide-gated cation channel beta-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474628,198,324 - 28,268,280 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cngb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474628,198,324 - 28,268,280 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
CNGB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381657,882,340 - 57,971,128 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1657,882,340 - 57,971,128 (-)Ensemblhg38GRCh38
GRCh371657,916,244 - 58,005,032 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361656,475,206 - 56,562,513 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341656,475,003 - 56,562,497NCBI
Celera1642,413,576 - 42,502,338 (-)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1643,783,333 - 43,871,939 (-)NCBIHuRef
CHM1_11659,323,315 - 59,412,065 (-)NCBICHM1_1
T2T-CHM13v2.01663,677,581 - 63,766,382 (-)NCBIT2T-CHM13v2.0
Cngb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39895,965,671 - 96,033,213 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl895,965,673 - 96,033,213 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38895,239,043 - 95,306,585 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl895,239,045 - 95,306,585 (-)Ensemblmm10GRCm38
MGSCv37897,814,493 - 97,830,485 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
Celera899,610,443 - 99,627,497 (-)NCBICelera
Cytogenetic Map8C5NCBI
cM Map847.12NCBI
Cngb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,732,646 - 9,798,864 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl199,732,646 - 9,797,224 (+)EnsemblGRCr8
mRatBN7.2199,726,595 - 9,791,111 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,726,595 - 9,791,173 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx199,691,498 - 9,755,704 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01910,458,328 - 10,522,528 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0199,744,658 - 9,808,868 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd199,723,420 - 9,787,480 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1913,535,357 - 13,599,415 (+)NCBILyon_Normotensive
Lyon_Hypertensive1914,028,244 - 14,092,304 (+)NCBILyon_Hypertensive
F344_StmMcwi199,575,403 - 9,639,465 (+)NCBIF344_StmMcwi
Rnor_6.01910,142,440 - 10,206,618 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1910,142,496 - 10,206,681 (+)Ensemblrn6Rnor6.0
Rnor_5.01910,126,285 - 10,190,852 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41910,186,416 - 10,257,296 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera199,619,420 - 9,683,573 (+)NCBICelera
RGSC_v3.11910,191,241 - 10,262,122NCBI
Cytogenetic Map19p13NCBI
Cngb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543315,468,211 - 15,546,304 (-)Ensembl
ChiLan1.0NW_00495543315,467,042 - 15,556,471 (-)NCBIChiLan1.0ChiLan1.0
CNGB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21867,350,552 - 67,447,462 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11673,271,449 - 73,368,404 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01638,160,056 - 38,249,474 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11657,290,276 - 57,379,282 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1657,292,093 - 57,375,460 (-)EnsemblpanPan2panpan1.1
CNGB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1258,574,552 - 58,641,631 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl258,574,552 - 58,640,812 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha255,204,187 - 55,268,847 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0259,113,127 - 59,180,268 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,113,127 - 59,180,264 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1255,944,477 - 56,009,276 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0256,951,994 - 57,016,919 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0257,845,272 - 57,909,956 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cngb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934949,681,069 - 49,746,175 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364759,844,438 - 9,908,009 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNGB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1619,752,734 - 19,865,830 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2617,783,799 - 17,840,139 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNGB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1543,814,500 - 43,903,323 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604732,300,772 - 32,364,172 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cngb1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1172,105,576 - 2,166,481 (-)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_021256502   ⟹   XP_021112161
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474628,198,324 - 28,268,280 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021112161 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021112161   ⟸   XM_021256502
- UniProtKB: A0AAX6SUP1 (UniProtKB/TrEMBL),   G5AUF7 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Gene3D-CATH 1.10.287.70 UniProtKB/TrEMBL
  Helix hairpin bin UniProtKB/TrEMBL
  Jelly Rolls UniProtKB/TrEMBL
InterPro CNG_Cation_Channel UniProtKB/TrEMBL
  cNMP-bd_CS UniProtKB/TrEMBL
  cNMP-bd_dom UniProtKB/TrEMBL
  cNMP-bd_dom_sf UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  RmlC-like_jellyroll UniProtKB/TrEMBL
NCBI Gene Cngb1 ENTREZGENE
PANTHER CYCLIC NUCLEOTIDE-GATED CATION CHANNEL BETA-1 UniProtKB/TrEMBL
  CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A UniProtKB/TrEMBL
Pfam cNMP_binding UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
PROSITE CNMP_BINDING_1 UniProtKB/TrEMBL
  CNMP_BINDING_2 UniProtKB/TrEMBL
  CNMP_BINDING_3 UniProtKB/TrEMBL
SMART cNMP UniProtKB/TrEMBL
Superfamily-SCOP cAMP-binding domain-like UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/TrEMBL
UniProt A0AAX6SUP1 ENTREZGENE, UniProtKB/TrEMBL
  G5AUF7 ENTREZGENE, UniProtKB/TrEMBL