Cngb1 (cyclic nucleotide gated channel beta 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cngb1 (cyclic nucleotide gated channel beta 1) Mus musculus
Analyze
Symbol: Cngb1
Name: cyclic nucleotide gated channel beta 1
RGD ID: 1553335
MGI Page MGI
Description: Enables cyclic nucleotide-activated monoatomic ion channel activity. Acts upstream of or within several processes, including photoreceptor cell maintenance; photoreceptor cell outer segment organization; and sensory perception of smell. Located in membrane and photoreceptor outer segment. Is expressed in several structures, including head mesenchyme; incisor; limb; sensory organ; and skeleton. Used to study retinitis pigmentosa. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 45. Orthologous to human CNGB1 (cyclic nucleotide gated channel subunit beta 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BC016201; cDNA sequence BC016201; CNG channel 4; CNG-4; CNG4; Cngb; Cngb1b; cyclic nucleotide gated channel beta 1b; cyclic nucleotide-gated cation channel 4; cyclic nucleotide-gated cation channel beta-1; cyclic nucleotide-gated channel beta subunit 1; cyclic nucleotide-gated channel beta-1; Garp2; Gm1959; MGC27656
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39895,965,671 - 96,033,213 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl895,965,673 - 96,033,213 (-)EnsemblGRCm39 Ensembl
GRCm38895,239,043 - 95,306,585 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl895,239,045 - 95,306,585 (-)EnsemblGRCm38mm10GRCm38
MGSCv37897,814,493 - 97,830,485 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera899,610,443 - 99,627,497 (-)NCBICelera
Cytogenetic Map8C5NCBI
cM Map847.12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Segregation of a mutation in CNGB1 encoding the beta-subunit of the rod cGMP-gated channel in a family with autosomal recessive retinitis pigmentosa. Bareil C, etal., Hum Genet 2001 Apr;108(4):328-34.
2. Calcium signalling remodelling and disease. Berridge MJ Biochem Soc Trans. 2012 Apr;40(2):297-309. doi: 10.1042/BST20110766.
3. Genes and mutations causing retinitis pigmentosa. Daiger SP, etal., Clin Genet. 2013 Aug;84(2):132-41. doi: 10.1111/cge.12203. Epub 2013 Jun 19.
4. Cyclic nucleotide-gated ion channels. Kaupp UB and Seifert R, Physiol Rev. 2002 Jul;82(3):769-824.
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Photoreceptor degeneration: genetic and mechanistic dissection of a complex trait. Wright AF, etal., Nat Rev Genet. 2010 Apr;11(4):273-84. doi: 10.1038/nrg2717.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11764791   PMID:12040188   PMID:12432397   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15623801   PMID:15634774  
PMID:16110338   PMID:16141072   PMID:16141073   PMID:16782012   PMID:16980309   PMID:18466748   PMID:19299621   PMID:19339551   PMID:21123569   PMID:21149284   PMID:21209198   PMID:21267068  
PMID:21873635   PMID:22183407   PMID:22192355   PMID:22367173   PMID:22802073   PMID:23178122   PMID:24963162   PMID:25323447   PMID:25392995   PMID:26246500   PMID:26720471   PMID:26740549  
PMID:26893377   PMID:26934134   PMID:28053034   PMID:28198469   PMID:28379353   PMID:29202463   PMID:30126843   PMID:31285302   PMID:32290105   PMID:33637563   PMID:35327647   PMID:36040015  
PMID:38086857  


Genomics

Comparative Map Data
Cngb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39895,965,671 - 96,033,213 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl895,965,673 - 96,033,213 (-)EnsemblGRCm39 Ensembl
GRCm38895,239,043 - 95,306,585 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl895,239,045 - 95,306,585 (-)EnsemblGRCm38mm10GRCm38
MGSCv37897,814,493 - 97,830,485 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera899,610,443 - 99,627,497 (-)NCBICelera
Cytogenetic Map8C5NCBI
cM Map847.12NCBI
CNGB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381657,882,340 - 57,971,128 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1657,882,340 - 57,971,128 (-)EnsemblGRCh38hg38GRCh38
GRCh371657,916,244 - 58,005,032 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361656,475,206 - 56,562,513 (-)NCBINCBI36Build 36hg18NCBI36
Build 341656,475,003 - 56,562,497NCBI
Celera1642,413,576 - 42,502,338 (-)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1643,783,333 - 43,871,939 (-)NCBIHuRef
CHM1_11659,323,315 - 59,412,065 (-)NCBICHM1_1
T2T-CHM13v2.01663,677,581 - 63,766,382 (-)NCBIT2T-CHM13v2.0
Cngb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,732,646 - 9,798,864 (+)NCBIGRCr8
mRatBN7.2199,726,595 - 9,791,111 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,726,595 - 9,791,173 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx199,691,498 - 9,755,704 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01910,458,328 - 10,522,528 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0199,744,658 - 9,808,868 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01910,142,440 - 10,206,618 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1910,142,496 - 10,206,681 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01910,126,285 - 10,190,852 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,186,416 - 10,257,296 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11910,191,241 - 10,262,122NCBI
Celera199,619,420 - 9,683,573 (+)NCBICelera
Cytogenetic Map19p13NCBI
Cngb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543315,467,042 - 15,556,471 (-)NCBIChiLan1.0ChiLan1.0
CNGB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21867,350,552 - 67,447,462 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11673,271,449 - 73,368,404 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01638,160,056 - 38,249,474 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11657,290,276 - 57,379,282 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1657,292,093 - 57,375,460 (-)Ensemblpanpan1.1panPan2
CNGB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1258,574,552 - 58,641,631 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl258,574,552 - 58,640,812 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha255,204,187 - 55,268,847 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,113,127 - 59,180,268 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,113,127 - 59,180,264 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1255,944,477 - 56,009,276 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0256,951,994 - 57,016,919 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0257,845,272 - 57,909,956 (+)NCBIUU_Cfam_GSD_1.0
Cngb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934949,681,069 - 49,746,175 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364759,844,438 - 9,908,009 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNGB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1619,752,734 - 19,865,830 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2617,783,799 - 17,840,139 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CNGB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1543,814,500 - 43,903,323 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604732,300,772 - 32,364,172 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cngb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474628,198,324 - 28,268,280 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cngb1
2352 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2146
Count of miRNA genes:648
Interacting mature miRNAs:812
Transcripts:ENSMUST00000093268, ENSMUST00000119870, ENSMUST00000120044, ENSMUST00000121162, ENSMUST00000133716, ENSMUST00000134207, ENSMUST00000156514, ENSMUST00000184103, ENSMUST00000184621
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
14696809Rbcn3_mrod bipolar cell number 3 (mouse)895056628102856632Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
1301766Desp1_mdespair 1 (mouse)Not determined885486208119486373Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined886443553120443701Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)882345783116345783Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined876411976110412125Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined872122809106123021Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined886443553120443701Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871829531105829637Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873929123107929226Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881819296115819296Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined886443553120443701Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined879245241113245331Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined876402145110402251Mouse

Markers in Region
PMC26527P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38895,275,561 - 95,275,766UniSTSGRCm38
MGSCv37897,799,461 - 97,799,666UniSTSGRCm37
MGSCv375143,450,089 - 143,450,294UniSTSGRCm37
Celera899,595,405 - 99,595,610UniSTS
Cytogenetic Map8D1UniSTS


Sequence


Ensembl Acc Id: ENSMUST00000093268   ⟹   ENSMUSP00000090956
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl896,017,221 - 96,033,213 (-)Ensembl
GRCm38.p6 Ensembl895,290,593 - 95,306,585 (-)Ensembl
Ensembl Acc Id: ENSMUST00000119870   ⟹   ENSMUSP00000113827
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl895,965,673 - 96,033,213 (-)Ensembl
GRCm38.p6 Ensembl895,239,045 - 95,306,585 (-)Ensembl
Ensembl Acc Id: ENSMUST00000120044   ⟹   ENSMUSP00000113750
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl895,967,609 - 96,008,218 (-)Ensembl
GRCm38.p6 Ensembl895,240,981 - 95,281,590 (-)Ensembl
Ensembl Acc Id: ENSMUST00000121162   ⟹   ENSMUSP00000112437
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl895,967,615 - 96,008,238 (-)Ensembl
GRCm38.p6 Ensembl895,240,987 - 95,281,610 (-)Ensembl
Ensembl Acc Id: ENSMUST00000133716   ⟹   ENSMUSP00000148564
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl896,017,221 - 96,033,166 (-)Ensembl
GRCm38.p6 Ensembl895,290,593 - 95,306,538 (-)Ensembl
Ensembl Acc Id: ENSMUST00000134207   ⟹   ENSMUSP00000148391
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl896,017,221 - 96,033,182 (-)Ensembl
GRCm38.p6 Ensembl895,290,593 - 95,306,554 (-)Ensembl
Ensembl Acc Id: ENSMUST00000156514   ⟹   ENSMUSP00000148290
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl896,017,224 - 96,033,198 (-)Ensembl
GRCm38.p6 Ensembl895,290,596 - 95,306,570 (-)Ensembl
Ensembl Acc Id: ENSMUST00000184103   ⟹   ENSMUSP00000139246
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl896,017,251 - 96,020,702 (-)Ensembl
GRCm38.p6 Ensembl895,290,623 - 95,294,074 (-)Ensembl
Ensembl Acc Id: ENSMUST00000184621
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl896,017,224 - 96,020,297 (-)Ensembl
GRCm38.p6 Ensembl895,290,596 - 95,293,669 (-)Ensembl
Ensembl Acc Id: ENSMUST00000212237   ⟹   ENSMUSP00000148367
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl896,017,559 - 96,027,294 (-)Ensembl
GRCm38.p6 Ensembl895,290,931 - 95,300,666 (-)Ensembl
RefSeq Acc Id: NM_001195413   ⟹   NP_001182342
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39895,965,671 - 96,033,213 (-)NCBI
GRCm38895,239,043 - 95,306,585 (-)ENTREZGENE
Celera899,558,652 - 99,627,497 (-)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_145601   ⟹   NP_663576
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39896,017,221 - 96,033,213 (-)NCBI
GRCm38895,290,593 - 95,306,585 (-)NCBI
MGSCv37897,814,493 - 97,830,485 (-)RGD
MGSCv37897,762,943 - 97,830,484 (-)RGD
Celera899,558,652 - 99,627,497 (-)ENTREZGENE
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006531140   ⟹   XP_006531203
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39895,965,671 - 96,002,518 (-)NCBI
GRCm38895,239,043 - 95,275,892 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036154139   ⟹   XP_036010032
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39895,965,671 - 95,998,610 (-)NCBI
Sequence:
RefSeq Acc Id: NP_663576   ⟸   NM_145601
- Peptide Label: isoform 2
- UniProtKB: Q91WA8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001182342   ⟸   NM_001195413
- Peptide Label: isoform 1
- UniProtKB: E1AZ71 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006531203   ⟸   XM_006531140
- Peptide Label: isoform X1
- UniProtKB: E9PXX0 (UniProtKB/TrEMBL),   Q80XL8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000139246   ⟸   ENSMUST00000184103
Ensembl Acc Id: ENSMUSP00000113827   ⟸   ENSMUST00000119870
Ensembl Acc Id: ENSMUSP00000090956   ⟸   ENSMUST00000093268
Ensembl Acc Id: ENSMUSP00000112437   ⟸   ENSMUST00000121162
Ensembl Acc Id: ENSMUSP00000113750   ⟸   ENSMUST00000120044
Ensembl Acc Id: ENSMUSP00000148391   ⟸   ENSMUST00000134207
Ensembl Acc Id: ENSMUSP00000148564   ⟸   ENSMUST00000133716
Ensembl Acc Id: ENSMUSP00000148367   ⟸   ENSMUST00000212237
Ensembl Acc Id: ENSMUSP00000148290   ⟸   ENSMUST00000156514
RefSeq Acc Id: XP_036010032   ⟸   XM_036154139
- Peptide Label: isoform X2
Protein Domains
Cyclic nucleotide-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E1AZ71-F1-model_v2 AlphaFold E1AZ71 1-1325 view protein structure

Promoters
RGD ID:8667949
Promoter ID:EPDNEW_M12006
Type:initiation region
Name:Cngb1_1
Description:Mus musculus cyclic nucleotide gated channel beta 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38895,306,569 - 95,306,629EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2664102 AgrOrtholog
Ensembl Genes ENSMUSG00000031789 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000093268 ENTREZGENE
  ENSMUST00000093268.5 UniProtKB/TrEMBL
  ENSMUST00000119870 ENTREZGENE
  ENSMUST00000119870.9 UniProtKB/Swiss-Prot
  ENSMUST00000120044 ENTREZGENE
  ENSMUST00000120044.9 UniProtKB/TrEMBL
  ENSMUST00000121162.3 UniProtKB/TrEMBL
  ENSMUST00000133716.9 UniProtKB/TrEMBL
  ENSMUST00000134207.9 UniProtKB/TrEMBL
  ENSMUST00000156514.2 UniProtKB/TrEMBL
  ENSMUST00000184103.9 UniProtKB/TrEMBL
  ENSMUST00000212237.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.120.10 UniProtKB/TrEMBL
  Helix hairpin bin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Jelly Rolls UniProtKB/Swiss-Prot
InterPro CNG_Cation_Channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  cNMP-bd-like UniProtKB/TrEMBL
  cNMP-bd_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  cNMP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  cNMP-bd_dom_sf UniProtKB/Swiss-Prot
  RmlC-like_jellyroll UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:333329 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2664102 ENTREZGENE
NCBI Gene 333329 ENTREZGENE
PANTHER CYCLIC NUCLEOTIDE-GATED CATION CHANNEL BETA-1 UniProtKB/Swiss-Prot
  CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45638:SF16 UniProtKB/TrEMBL
Pfam cNMP_binding UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cngb1 PhenoGen
PROSITE CNMP_BINDING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CNMP_BINDING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CNMP_BINDING_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART cNMP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP cAMP-binding domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Voltage-gated potassium channels UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1D5RLA7_MOUSE UniProtKB/TrEMBL
  A0A1D5RLH2_MOUSE UniProtKB/TrEMBL
  A0A1D5RLJ2_MOUSE UniProtKB/TrEMBL
  A0A1D5RLZ4_MOUSE UniProtKB/TrEMBL
  CNGB1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  E9PXX0 ENTREZGENE, UniProtKB/TrEMBL
  Q80VQ4_MOUSE UniProtKB/TrEMBL
  Q80XL8 ENTREZGENE, UniProtKB/TrEMBL
  Q91WA8 ENTREZGENE, UniProtKB/TrEMBL
  V9GXN8_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-02 Cngb1  cyclic nucleotide gated channel beta 1  BC016201  cDNA sequence BC016201  Data merged from RGD:1619829 737654 PROVISIONAL