Sgo1 (shugoshin 1) - Rat Genome Database

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Gene: Sgo1 (shugoshin 1) Rattus norvegicus
Analyze
Symbol: Sgo1
Name: shugoshin 1
RGD ID: 1593238
Description: Predicted to enable kinase binding activity. Predicted to be involved in attachment of spindle microtubules to kinetochore and mitotic sister chromatid cohesion, centromeric. Predicted to act upstream of or within centriole-centriole cohesion and meiotic chromosome segregation. Predicted to be located in several cellular components, including kinetochore; microtubule cytoskeleton; and nucleoplasm. Human ortholog(s) of this gene implicated in chronic atrial and intestinal dysrhythmia. Orthologous to human SGO1 (shugoshin 1); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC363174; Sgol1; shugoshin-like 1; shugoshin-like 1 (S. pombe); similar to shugoshin-like 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr896,908,661 - 6,943,483 (-)NCBIGRCr8
mRatBN7.296,672,109 - 6,687,908 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl96,672,123 - 6,687,805 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx97,824,399 - 7,840,180 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0912,981,935 - 12,997,712 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0912,139,917 - 12,155,692 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.094,420,158 - 4,435,939 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl94,421,069 - 4,436,601 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.093,458,754 - 3,474,509 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49863,665 - 876,405NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-butoxyethanol  (ISO)
2-methylcholine  (ISO)
2-palmitoylglycerol  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
clofibrate  (ISO)
coumestrol  (ISO)
dibenz[a,h]anthracene  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
Enterolactone  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
FR900359  (ISO)
L-methionine  (ISO)
lucanthone  (ISO)
methyl methanesulfonate  (ISO)
N-Nitrosopyrrolidine  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
PCB138  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propanal  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tacrolimus hydrate  (ISO)
tamoxifen  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (ISO)
trimellitic anhydride  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16580887   PMID:16582621   PMID:16682347   PMID:17617734   PMID:17621308   PMID:18084284   PMID:18331714   PMID:19465021   PMID:24055156   PMID:24157919   PMID:33953173  


Genomics

Comparative Map Data
Sgo1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr896,908,661 - 6,943,483 (-)NCBIGRCr8
mRatBN7.296,672,109 - 6,687,908 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl96,672,123 - 6,687,805 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx97,824,399 - 7,840,180 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0912,981,935 - 12,997,712 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0912,139,917 - 12,155,692 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.094,420,158 - 4,435,939 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl94,421,069 - 4,436,601 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.093,458,754 - 3,474,509 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49863,665 - 876,405NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map9q11NCBI
SGO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38320,160,593 - 20,186,886 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl320,160,593 - 20,186,206 (-)EnsemblGRCh38hg38GRCh38
GRCh37320,202,085 - 20,227,698 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36320,177,087 - 20,202,687 (-)NCBINCBI36Build 36hg18NCBI36
Build 34320,177,088 - 20,202,687NCBI
Celera320,142,704 - 20,168,302 (-)NCBICelera
Cytogenetic Map3p24.3NCBI
HuRef320,141,996 - 20,167,635 (-)NCBIHuRef
CHM1_1320,153,920 - 20,179,582 (-)NCBICHM1_1
T2T-CHM13v2.0320,164,579 - 20,190,864 (-)NCBIT2T-CHM13v2.0
Sgo1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391753,981,814 - 53,996,432 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1753,981,814 - 53,996,361 (-)EnsemblGRCm39 Ensembl
GRCm381753,674,786 - 53,691,331 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1753,674,786 - 53,689,333 (-)EnsemblGRCm38mm10GRCm38
MGSCv371753,814,112 - 53,828,640 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361753,140,989 - 53,154,241 (-)NCBIMGSCv36mm8
Celera1757,116,694 - 57,131,231 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1727.92NCBI
Sgo1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543012,198,397 - 12,213,201 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543012,200,601 - 12,216,845 (-)NCBIChiLan1.0ChiLan1.0
SGO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2220,127,242 - 20,144,043 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1320,132,008 - 20,148,703 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0320,079,671 - 20,096,390 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1320,409,002 - 20,424,940 (-)NCBIpanpan1.1PanPan1.1panPan2
SGO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12323,145,187 - 23,160,581 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2323,144,816 - 23,315,597 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2323,168,474 - 23,183,459 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02323,629,839 - 23,644,831 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2323,632,352 - 23,643,827 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12323,342,031 - 23,357,256 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02323,407,492 - 23,422,465 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02323,653,722 - 23,668,705 (+)NCBIUU_Cfam_GSD_1.0
Sgo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118179,285,311 - 179,301,037 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647312,425,780 - 12,436,899 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647312,425,026 - 12,436,900 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl137,137,896 - 7,153,170 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1137,137,891 - 7,153,202 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2138,091,298 - 8,106,584 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SGO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11564,901,974 - 64,917,338 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1564,901,668 - 64,917,324 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604137,921,295 - 37,936,698 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sgo1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248215,498,386 - 5,511,796 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248215,497,620 - 5,514,661 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sgo1
95 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:128
Count of miRNA genes:116
Interacting mature miRNAs:119
Transcripts:ENSRNOT00000065721
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9336865213533896Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000065721   ⟹   ENSRNOP00000061236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl96,672,123 - 6,687,805 (-)Ensembl
Rnor_6.0 Ensembl94,421,069 - 4,436,601 (+)Ensembl
RefSeq Acc Id: NM_001399344   ⟹   NP_001386273
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr896,908,661 - 6,924,415 (-)NCBI
mRatBN7.296,672,109 - 6,687,865 (-)NCBI
RefSeq Acc Id: NM_001399345   ⟹   NP_001386274
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr896,908,661 - 6,924,415 (-)NCBI
mRatBN7.296,672,109 - 6,687,865 (-)NCBI
RefSeq Acc Id: XM_039084402   ⟹   XP_038940330
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr896,908,667 - 6,924,453 (-)NCBI
mRatBN7.296,672,109 - 6,687,908 (-)NCBI
RefSeq Acc Id: XM_063267351   ⟹   XP_063123421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr896,908,667 - 6,943,483 (-)NCBI
RefSeq Acc Id: XM_063267352   ⟹   XP_063123422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr896,908,667 - 6,943,118 (-)NCBI
RefSeq Acc Id: XM_063267353   ⟹   XP_063123423
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr896,908,667 - 6,924,427 (-)NCBI
Ensembl Acc Id: ENSRNOP00000061236   ⟸   ENSRNOT00000065721
RefSeq Acc Id: XP_038940330   ⟸   XM_039084402
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001386273   ⟸   NM_001399344
- UniProtKB: D4A624 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386274   ⟸   NM_001399345
- UniProtKB: D4A624 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123421   ⟸   XM_063267351
- Peptide Label: isoform X1
- UniProtKB: D4A624 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123422   ⟸   XM_063267352
- Peptide Label: isoform X1
- UniProtKB: D4A624 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123423   ⟸   XM_063267353
- Peptide Label: isoform X2
Protein Domains
Shugoshin C-terminal   Shugoshin N-terminal coiled-coil

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A624-F1-model_v2 AlphaFold D4A624 1-483 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593238 AgrOrtholog
BioCyc Gene G2FUF-28393 BioCyc
Ensembl Genes ENSRNOG00000022499 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065721.3 UniProtKB/TrEMBL
Gene3D-CATH Single helix bin UniProtKB/TrEMBL
InterPro Shugoshin UniProtKB/TrEMBL
  Shugoshin_C UniProtKB/TrEMBL
  Shugoshin_N UniProtKB/TrEMBL
NCBI Gene 363174 ENTREZGENE
PANTHER PTHR21577 UniProtKB/TrEMBL
  PTHR21577:SF3 UniProtKB/TrEMBL
Pfam Shugoshin_C UniProtKB/TrEMBL
  Shugoshin_N UniProtKB/TrEMBL
PhenoGen Sgo1 PhenoGen
RatGTEx ENSRNOG00000022499 RatGTEx
UniProt D4A624 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-29 Sgo1  shugoshin 1  Sgol1  shugoshin-like 1 (S. pombe)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Sgol1  shugoshin-like 1 (S. pombe)  LOC363174  similar to shugoshin-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC363174  similar to shugoshin-like 1      Symbol and Name status set to provisional 70820 PROVISIONAL