Speer4cl1 (spermatogenesis associated glutamate (E)-rich protein 4C like 1) - Rat Genome Database

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Gene: Speer4cl1 (spermatogenesis associated glutamate (E)-rich protein 4C like 1) Rattus norvegicus
Analyze
Symbol: Speer4cl1 (Ensembl: LOC120098582)
Name: spermatogenesis associated glutamate (E)-rich protein 4C like 1 (Ensembl:disks large homolog 5-like)
RGD ID: 1587786
Description: INTERACTS WITH glyphosate
Type: protein-coding
RefSeq Status: MODEL
Previously known as: disks large homolog 5-like; hypothetical LOC501346; hypothetical protein LOC685989; hypothetical protein LOC686017; hypothetical protein LOC690523; LOC501235; LOC501346; LOC679785; LOC685071; LOC685918; LOC685989; LOC686017; LOC686886; LOC690523; similar to RIKEN cDNA 5031410I06; similar to spermatogenesis associated glutamate (E)-rich protein 4d; Speer4cl; uncharacterized protein LOC685989; uncharacterized protein Speer4cl1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81924,811,769 - 25,016,336 (+)NCBIGRCr8
mRatBN7.21921,909,719 - 21,937,396 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1921,909,754 - 22,356,833 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.019309,214 - 313,428 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.019313,202 - 317,380 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41914,784,874 - 14,790,600 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map19q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
glyphosate  (EXP)

References

Genomics

Variants

.
Variants in Speer4cl1
1230 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)191392640130303727Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032318023069265Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000049865   ⟹   ENSRNOP00000041279
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1921,909,889 - 21,921,102 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100796   ⟹   ENSRNOP00000086093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1921,909,754 - 21,937,437 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115454   ⟹   ENSRNOP00000083851
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1921,909,889 - 22,356,833 (-)Ensembl
RefSeq Acc Id: XM_063278571   ⟹   XP_063134641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81924,811,802 - 24,909,726 (+)NCBI
RefSeq Acc Id: XM_063278572   ⟹   XP_063134642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81924,811,832 - 24,815,630 (+)NCBI
RefSeq Acc Id: XM_063278573   ⟹   XP_063134643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81924,811,769 - 25,016,336 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063134641 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134642 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134643 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000041279.5
  ENSRNOP00000086093.1
  ENSRNOP00000097764.1
Ensembl Acc Id: ENSRNOP00000083851   ⟸   ENSRNOT00000115454
Ensembl Acc Id: ENSRNOP00000086093   ⟸   ENSRNOT00000100796
Ensembl Acc Id: ENSRNOP00000041279   ⟸   ENSRNOT00000049865
RefSeq Acc Id: XP_063134643   ⟸   XM_063278573
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063134641   ⟸   XM_063278571
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A545 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134642   ⟸   XM_063278572
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AWS2 (UniProtKB/TrEMBL)
Protein Domains
Disks large homolog 5 N-terminal

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-6195 BioCyc
Ensembl Genes ENSRNOG00000062442 UniProtKB/TrEMBL
  ENSRNOG00000068016 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000049865.5 UniProtKB/TrEMBL
  ENSRNOT00000100796.1 UniProtKB/TrEMBL
  ENSRNOT00000107061.1 UniProtKB/TrEMBL
InterPro DUF622 UniProtKB/TrEMBL
NCBI Gene 685989 ENTREZGENE
PANTHER RIKEN CDNA 4930572O03 GENE-RELATED UniProtKB/TrEMBL
  SPEER/SPETEX UniProtKB/TrEMBL
Pfam Takusan UniProtKB/TrEMBL
PhenoGen Speer4cl1 PhenoGen
RatGTEx ENSRNOG00000062442 RatGTEx
  ENSRNOG00000068016 RatGTEx
UniProt A0A8I6A545 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AWS2 ENTREZGENE, UniProtKB/TrEMBL
  F1LY47_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-12 Speer4cl1  spermatogenesis associated glutamate (E)-rich protein 4C like 1  Speer4cl  spermatogenesis associated glutamate (E)-rich protein 4C like  Name and Symbol changed 629549 APPROVED
2023-09-19 Speer4cl  spermatogenesis associated glutamate (E)-rich protein 4C like  LOC685989  hypothetical protein LOC685989  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC685989  hypothetical protein LOC685989  LOC501346  hypothetical LOC501346  Data merged from RGD:1588411 737654 PROVISIONAL
2015-07-29 LOC685989  hypothetical protein LOC685989  LOC690523  hypothetical protein LOC690523  Data merged from RGD:1594732 737654 PROVISIONAL
2015-07-29 LOC685989  hypothetical protein LOC685989  LOC685918  similar to RIKEN cDNA 5031410I06  Data merged from RGD:1587856 737654 PROVISIONAL
2015-07-29 LOC685989  hypothetical protein LOC685989  LOC686017  hypothetical protein LOC686017  Data merged from RGD:1586679 737654 PROVISIONAL
2015-07-29 LOC685989  hypothetical protein LOC685989  LOC686886  similar to RIKEN cDNA 5031410I06  Data merged from RGD:1592471 737654 PROVISIONAL
2015-07-29 LOC685989  hypothetical protein LOC685989  LOC685071  similar to spermatogenesis associated glutamate (E)-rich protein 4d  Data merged from RGD:1583231 737654 PROVISIONAL
2015-07-29 LOC685989  hypothetical protein LOC685989  LOC679785  similar to RIKEN cDNA 5031410I06  Data merged from RGD:1584757 737654 PROVISIONAL
2015-07-29 LOC685989  hypothetical protein LOC685989  LOC501235  similar to spermatogenesis associated glutamate (E)-rich protein 4d  Data merged from RGD:1589622 737654 PROVISIONAL
2012-07-05 LOC686886  similar to RIKEN cDNA 5031410I06  LOC686886  similar to RIKEN cDNA 5031410I06  Gene reactivated at release of RGSC5.0 assembly 2298974 REACTIVATED
2006-11-20 LOC690523  hypothetical protein LOC690523      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC686886  similar to RIKEN cDNA 5031410I06      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC501235  similar to spermatogenesis associated glutamate (E)-rich protein 4d      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC685918  similar to RIKEN cDNA 5031410I06      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC685989  hypothetical protein LOC685989      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC686017  hypothetical protein LOC686017      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC679785  similar to RIKEN cDNA 5031410I06      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC685071  similar to spermatogenesis associated glutamate (E)-rich protein 4d      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC501346  hypothetical LOC501346      Symbol and Name status set to provisional 70820 PROVISIONAL