Vgll1 (vestigial-like family member 1) - Rat Genome Database

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Gene: Vgll1 (vestigial-like family member 1) Rattus norvegicus
Analyze
Symbol: Vgll1
Name: vestigial-like family member 1
RGD ID: 1564038
Description: Predicted to be located in nucleoplasm. Orthologous to human VGLL1 (vestigial like family member 1); INTERACTS WITH bisphenol A; diuron; 17alpha-ethynylestradiol (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC363508; RGD1564038; similar to vestigial-related factor; transcription cofactor vestigial-like protein 1; vestigial like 1 (Drosophila); vestigial like 1 homolog; vestigial like 1 homolog (Drosophila)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X140,016,938 - 140,036,348 (+)NCBIGRCr8
mRatBN7.2X134,979,657 - 134,996,007 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0X159,556,296 - 159,576,639 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X154,183,647 - 154,207,034 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X141,742,717 - 141,760,452 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX143,017,607 - 143,037,949 (+)NCBICelera
Cytogenetic MapXq36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17689488  


Genomics

Comparative Map Data
Vgll1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X140,016,938 - 140,036,348 (+)NCBIGRCr8
mRatBN7.2X134,979,657 - 134,996,007 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0X159,556,296 - 159,576,639 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X154,183,647 - 154,207,034 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X141,742,717 - 141,760,452 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX143,017,607 - 143,037,949 (+)NCBICelera
Cytogenetic MapXq36NCBI
VGLL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X136,532,215 - 136,556,799 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX136,532,215 - 136,556,807 (+)EnsemblGRCh38hg38GRCh38
GRCh37X135,614,374 - 135,638,958 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X135,441,977 - 135,466,629 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X135,339,830 - 135,364,483NCBI
CeleraX135,977,966 - 136,002,613 (+)NCBICelera
Cytogenetic MapXq26.3NCBI
HuRefX124,884,605 - 124,910,111 (+)NCBIHuRef
CHM1_1X135,525,952 - 135,550,606 (+)NCBICHM1_1
T2T-CHM13v2.0X134,840,972 - 134,865,547 (+)NCBIT2T-CHM13v2.0
Vgll1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X56,133,466 - 56,151,900 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX56,133,466 - 56,151,900 (+)EnsemblGRCm39 Ensembl
GRCm38X57,088,106 - 57,106,540 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX57,088,106 - 57,106,540 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X54,341,283 - 54,358,623 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X53,434,890 - 53,452,230 (+)NCBIMGSCv36mm8
CeleraX43,567,305 - 43,584,536 (+)NCBICelera
Cytogenetic MapXA6NCBI
cM MapX30.89NCBI
Vgll1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554898,569,891 - 8,586,770 (-)NCBIChiLan1.0ChiLan1.0
VGLL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X135,949,410 - 135,974,544 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X135,953,099 - 135,978,136 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X125,660,337 - 125,685,373 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X135,926,733 - 135,951,303 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX135,926,371 - 135,951,303 (+)Ensemblpanpan1.1panPan2
VGLL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X106,885,568 - 106,915,659 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX92,706,149 - 92,736,234 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X108,865,259 - 108,895,367 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX108,865,227 - 108,895,373 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X106,005,961 - 106,036,028 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X108,197,786 - 108,227,566 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X107,838,437 - 107,868,527 (+)NCBIUU_Cfam_GSD_1.0
Vgll1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X104,853,481 - 104,893,151 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651310,721,500 - 10,742,670 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651310,704,343 - 10,742,583 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VGLL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX111,662,621 - 111,683,504 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X111,662,565 - 111,684,676 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X127,507,784 - 127,542,261 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VGLL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X111,531,915 - 111,558,753 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606549,216,243 - 49,252,713 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vgll1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480810,590,328 - 10,611,775 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Vgll1
79 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_008773668   ⟹   XP_008771890
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X140,016,938 - 140,036,348 (+)NCBI
mRatBN7.2X134,979,657 - 134,996,007 (+)NCBI
Rnor_6.0X159,556,296 - 159,576,639 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008771890 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL75131 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_008771890   ⟸   XM_008773668
- Sequence:


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564038 AgrOrtholog
BioCyc Gene G2FUF-909 BioCyc
NCBI Gene 363508 ENTREZGENE
PhenoGen Vgll1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-13 Vgll1  vestigial-like family member 1  Vgll1  vestigial like 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Vgll1  vestigial like 1 (Drosophila)  Vgll1  vestigial like 1 homolog (Drosophila)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Vgll1  vestigial like 1 homolog (Drosophila)   Vgll1_predicted  vestigial like 1 homolog (Drosophila) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Vgll1_predicted  vestigial like 1 homolog (Drosophila) (predicted)  RGD1564038_predicted  similar to vestigial-related factor (predicted)  Symbol and Name updated 1299863 APPROVED
2006-03-07 RGD1564038_predicted  similar to vestigial-related factor (predicted)  LOC363508  similar to vestigial-related factor  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC363508  similar to vestigial-related factor      Symbol and Name status set to provisional 70820 PROVISIONAL