Vgll1 (vestigial like family member 1) - Rat Genome Database

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Gene: Vgll1 (vestigial like family member 1) Ictidomys tridecemlineatus
Analyze
Symbol: Vgll1
Name: vestigial like family member 1
RGD ID: 12657426
Description: INVOLVED IN regulation of DNA-templated transcription (inferred); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Christianson syndrome (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcription cofactor vestigial-like protein 1; vestigial like 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X104,853,481 - 104,893,151 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651310,721,500 - 10,742,670 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651310,704,343 - 10,742,583 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Vgll1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X104,853,481 - 104,893,151 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651310,721,500 - 10,742,670 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651310,704,343 - 10,742,583 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VGLL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X136,532,215 - 136,556,799 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX136,532,215 - 136,556,807 (+)EnsemblGRCh38hg38GRCh38
GRCh37X135,614,374 - 135,638,958 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X135,441,977 - 135,466,629 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X135,339,830 - 135,364,483NCBI
CeleraX135,977,966 - 136,002,613 (+)NCBICelera
Cytogenetic MapXq26.3NCBI
HuRefX124,884,605 - 124,910,111 (+)NCBIHuRef
CHM1_1X135,525,952 - 135,550,606 (+)NCBICHM1_1
T2T-CHM13v2.0X134,840,972 - 134,865,547 (+)NCBIT2T-CHM13v2.0
Vgll1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X56,133,466 - 56,151,900 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX56,133,466 - 56,151,900 (+)EnsemblGRCm39 Ensembl
GRCm38X57,088,106 - 57,106,540 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX57,088,106 - 57,106,540 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X54,341,283 - 54,358,623 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X53,434,890 - 53,452,230 (+)NCBIMGSCv36mm8
CeleraX43,567,305 - 43,584,536 (+)NCBICelera
Cytogenetic MapXA6NCBI
cM MapX30.89NCBI
Vgll1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X140,016,938 - 140,036,348 (+)NCBIGRCr8
mRatBN7.2X134,979,657 - 134,996,007 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0X159,556,296 - 159,576,639 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X154,183,647 - 154,207,034 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X141,742,717 - 141,760,452 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX143,017,607 - 143,037,949 (+)NCBICelera
Cytogenetic MapXq36NCBI
Vgll1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554898,569,891 - 8,586,770 (-)NCBIChiLan1.0ChiLan1.0
VGLL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X135,949,410 - 135,974,544 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X135,953,099 - 135,978,136 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X125,660,337 - 125,685,373 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X135,926,733 - 135,951,303 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX135,926,371 - 135,951,303 (+)Ensemblpanpan1.1panPan2
VGLL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X106,885,568 - 106,915,659 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX92,706,149 - 92,736,234 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X108,865,259 - 108,895,367 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX108,865,227 - 108,895,373 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X106,005,961 - 106,036,028 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X108,197,786 - 108,227,566 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X107,838,437 - 107,868,527 (+)NCBIUU_Cfam_GSD_1.0
VGLL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX111,662,621 - 111,683,504 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X111,662,565 - 111,684,676 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X127,507,784 - 127,542,261 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VGLL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X111,531,915 - 111,558,753 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606549,216,243 - 49,252,713 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vgll1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480810,590,328 - 10,611,775 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000012520   ⟹   ENSSTOP00000011219
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493651310,721,500 - 10,742,670 (-)Ensembl
RefSeq Acc Id: XM_040286114   ⟹   XP_040142048
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X104,853,481 - 104,893,151 (+)NCBI
RefSeq Acc Id: XM_040286118   ⟹   XP_040142052
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X104,871,982 - 104,893,151 (+)NCBI
RefSeq Acc Id: XM_040286121   ⟹   XP_040142055
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X104,853,481 - 104,893,151 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040142048 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142052 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142055 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000011219.3
GenBank Protein KAG3273027 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040142048   ⟸   XM_040286114
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040142055   ⟸   XM_040286121
- Peptide Label: isoform X2
- UniProtKB: I3MJB2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040142052   ⟸   XM_040286118
- Peptide Label: isoform X1
Ensembl Acc Id: ENSSTOP00000011219   ⟸   ENSSTOT00000012520


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012521 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012520.3 UniProtKB/TrEMBL
InterPro TDU_repeat UniProtKB/TrEMBL
  Vg_fam UniProtKB/TrEMBL
NCBI Gene Vgll1 ENTREZGENE
PANTHER PTHR15950 UniProtKB/TrEMBL
  TRANSCRIPTION COFACTOR VESTIGIAL-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam Vg_Tdu UniProtKB/TrEMBL
SMART TDU UniProtKB/TrEMBL
UniProt I3MJB2 ENTREZGENE, UniProtKB/TrEMBL