Vgll1 (vestigial like family member 1) - Rat Genome Database

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Gene: Vgll1 (vestigial like family member 1) Heterocephalus glaber
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Symbol: Vgll1
Name: vestigial like family member 1
RGD ID: 18920241
Description: ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Christianson syndrome (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcription cofactor vestigial-like protein 1; vestigial like 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480810,590,328 - 10,611,775 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Vgll1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480810,590,328 - 10,611,775 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
VGLL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X136,532,215 - 136,556,799 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX136,532,215 - 136,556,807 (+)EnsemblGRCh38hg38GRCh38
GRCh37X135,614,374 - 135,638,958 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X135,441,977 - 135,466,629 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X135,339,830 - 135,364,483NCBI
CeleraX135,977,966 - 136,002,613 (+)NCBICelera
Cytogenetic MapXq26.3NCBI
HuRefX124,884,605 - 124,910,111 (+)NCBIHuRef
CHM1_1X135,525,952 - 135,550,606 (+)NCBICHM1_1
T2T-CHM13v2.0X134,840,972 - 134,865,547 (+)NCBIT2T-CHM13v2.0
Vgll1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X56,133,466 - 56,151,900 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX56,133,466 - 56,151,900 (+)EnsemblGRCm39 Ensembl
GRCm38X57,088,106 - 57,106,540 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX57,088,106 - 57,106,540 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X54,341,283 - 54,358,623 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X53,434,890 - 53,452,230 (+)NCBIMGSCv36mm8
CeleraX43,567,305 - 43,584,536 (+)NCBICelera
Cytogenetic MapXA6NCBI
cM MapX30.89NCBI
Vgll1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X140,016,938 - 140,036,348 (+)NCBIGRCr8
mRatBN7.2X134,979,657 - 134,996,007 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0X159,556,296 - 159,576,639 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X154,183,647 - 154,207,034 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X141,742,717 - 141,760,452 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX143,017,607 - 143,037,949 (+)NCBICelera
Cytogenetic MapXq36NCBI
Vgll1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554898,569,891 - 8,586,770 (-)NCBIChiLan1.0ChiLan1.0
VGLL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X135,949,410 - 135,974,544 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X135,953,099 - 135,978,136 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X125,660,337 - 125,685,373 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X135,926,733 - 135,951,303 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX135,926,371 - 135,951,303 (+)Ensemblpanpan1.1panPan2
VGLL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X106,885,568 - 106,915,659 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX92,706,149 - 92,736,234 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X108,865,259 - 108,895,367 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX108,865,227 - 108,895,373 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X106,005,961 - 106,036,028 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X108,197,786 - 108,227,566 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X107,838,437 - 107,868,527 (+)NCBIUU_Cfam_GSD_1.0
Vgll1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X104,853,481 - 104,893,151 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651310,721,500 - 10,742,670 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651310,704,343 - 10,742,583 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VGLL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX111,662,621 - 111,683,504 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X111,662,565 - 111,684,676 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X127,507,784 - 127,542,261 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VGLL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X111,531,915 - 111,558,753 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606549,216,243 - 49,252,713 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_013078673   ⟹   XP_012934127
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480810,590,328 - 10,611,775 (-)NCBI
RefSeq Acc Id: XM_021242543   ⟹   XP_021098202
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480810,590,328 - 10,611,771 (-)NCBI
RefSeq Acc Id: XM_021242544   ⟹   XP_021098203
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480810,590,328 - 10,611,775 (-)NCBI
Protein Sequences
Protein RefSeqs XP_012934127 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098202 (Get FASTA)   NCBI Sequence Viewer  
  XP_021098203 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021098203   ⟸   XM_021242544
- Peptide Label: isoform X2
RefSeq Acc Id: XP_012934127   ⟸   XM_013078673
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021098202   ⟸   XM_021242543
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene Vgll1 ENTREZGENE