Tex26 (testis expressed 26) - Rat Genome Database

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Gene: Tex26 (testis expressed 26) Rattus norvegicus
Analyze
Symbol: Tex26
Name: testis expressed 26
RGD ID: 1560846
Description: Predicted to be active in cytoplasm. Orthologous to human TEX26 (testis expressed 26); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC498133; LOC498133; RGD1560846; similar to hypothetical protein MGC40178; testis-expressed protein 26; uncharacterized protein LOC498133
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,610,030 - 10,641,545 (-)NCBIGRCr8
mRatBN7.2125,573,691 - 5,605,209 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl125,573,691 - 5,610,498 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx126,240,154 - 6,271,672 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0126,863,625 - 6,895,144 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0125,891,352 - 5,922,868 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0126,671,936 - 6,711,017 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl126,671,940 - 6,703,979 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0128,769,516 - 8,807,163 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4126,064,844 - 6,096,175 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera127,333,168 - 7,364,548 (-)NCBICelera
Cytogenetic Map12p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Tex26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,610,030 - 10,641,545 (-)NCBIGRCr8
mRatBN7.2125,573,691 - 5,605,209 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl125,573,691 - 5,610,498 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx126,240,154 - 6,271,672 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0126,863,625 - 6,895,144 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0125,891,352 - 5,922,868 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0126,671,936 - 6,711,017 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl126,671,940 - 6,703,979 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0128,769,516 - 8,807,163 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4126,064,844 - 6,096,175 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera127,333,168 - 7,364,548 (-)NCBICelera
Cytogenetic Map12p11NCBI
TEX26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381330,932,656 - 30,975,500 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1330,932,656 - 30,975,500 (+)EnsemblGRCh38hg38GRCh38
GRCh371331,506,793 - 31,549,637 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361330,404,834 - 30,447,153 (+)NCBINCBI36Build 36hg18NCBI36
Celera1312,573,379 - 12,615,677 (+)NCBICelera
Cytogenetic Map13q12.3NCBI
HuRef1312,317,700 - 12,359,981 (+)NCBIHuRef
CHM1_11331,473,935 - 31,516,681 (+)NCBICHM1_1
T2T-CHM13v2.01330,154,575 - 30,197,390 (+)NCBIT2T-CHM13v2.0
Tex26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395149,363,112 - 149,394,443 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5149,363,125 - 149,394,444 (+)EnsemblGRCm39 Ensembl
GRCm385149,439,651 - 149,470,979 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5149,439,660 - 149,470,979 (+)EnsemblGRCm38mm10GRCm38
MGSCv375150,242,281 - 150,273,195 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365149,708,079 - 149,739,358 (+)NCBIMGSCv36mm8
Celera5147,440,237 - 147,471,329 (+)NCBICelera
Cytogenetic Map5G3NCBI
cM Map589.18NCBI
Tex26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543114,880,150 - 14,909,955 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543114,880,152 - 14,910,325 (-)NCBIChiLan1.0ChiLan1.0
TEX26
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21430,513,725 - 30,563,746 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11321,620,484 - 21,712,263 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01312,207,172 - 12,257,552 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11330,641,192 - 30,690,566 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1330,641,192 - 30,683,344 (+)Ensemblpanpan1.1panPan2
TEX26
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,145,525 - 9,176,853 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,140,899 - 9,177,114 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha259,188,102 - 9,219,498 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,250,166 - 9,281,562 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,250,099 - 9,281,666 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1259,149,208 - 9,180,493 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0259,157,245 - 9,188,557 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0259,199,227 - 9,230,624 (-)NCBIUU_Cfam_GSD_1.0
Tex26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945170,259,927 - 170,291,007 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647225,661,222 - 25,692,122 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl117,566,491 - 7,593,532 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1117,571,787 - 7,593,557 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2117,417,913 - 7,445,196 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TEX26
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.139,806,103 - 9,846,939 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl39,806,169 - 9,847,431 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605734,520,818 - 34,562,174 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tex26
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247767,125,515 - 7,227,506 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247767,155,111 - 7,227,097 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tex26
250 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:64
Count of miRNA genes:51
Interacting mature miRNAs:60
Transcripts:ENSRNOT00000061246
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)1219318387Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12390696910373166Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12136247923Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)127977298525593Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 48 113 70 69 38 24 38 6 194 94 93 45 59 31

Sequence


Ensembl Acc Id: ENSRNOT00000061246   ⟹   ENSRNOP00000057958
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl125,573,700 - 5,610,498 (-)Ensembl
Rnor_6.0 Ensembl126,671,940 - 6,703,979 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115393   ⟹   ENSRNOP00000081142
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl125,573,691 - 5,605,202 (-)Ensembl
RefSeq Acc Id: NM_001134603   ⟹   NP_001128075
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81210,610,030 - 10,641,484 (-)NCBI
mRatBN7.2125,573,691 - 5,605,149 (-)NCBI
Rnor_6.0126,671,936 - 6,703,704 (-)NCBI
Rnor_5.0128,769,516 - 8,807,163 (-)NCBI
RGSC_v3.4126,064,844 - 6,096,175 (-)RGD
Celera127,333,168 - 7,364,548 (-)RGD
Sequence:
RefSeq Acc Id: XM_006248811   ⟹   XP_006248873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81210,610,495 - 10,641,539 (-)NCBI
mRatBN7.2125,573,694 - 5,605,198 (-)NCBI
Rnor_6.0126,671,943 - 6,704,065 (-)NCBI
Rnor_5.0128,769,516 - 8,807,163 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006248813   ⟹   XP_006248875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81210,618,969 - 10,641,545 (-)NCBI
mRatBN7.2125,581,142 - 5,605,209 (-)NCBI
Rnor_6.0126,679,632 - 6,704,110 (-)NCBI
Rnor_5.0128,769,516 - 8,807,163 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017598431   ⟹   XP_017453920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81210,610,495 - 10,641,328 (-)NCBI
mRatBN7.2125,573,694 - 5,604,977 (-)NCBI
Rnor_6.0126,671,943 - 6,703,609 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063271574   ⟹   XP_063127644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81210,618,969 - 10,641,542 (-)NCBI
RefSeq Acc Id: XR_005491661
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81210,610,495 - 10,641,544 (-)NCBI
mRatBN7.2125,573,694 - 5,605,209 (-)NCBI
RefSeq Acc Id: XR_010056408
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81210,614,123 - 10,641,545 (-)NCBI
RefSeq Acc Id: XR_010056409
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81210,614,123 - 10,641,545 (-)NCBI
RefSeq Acc Id: NP_001128075   ⟸   NM_001134603
- UniProtKB: A6K164 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248873   ⟸   XM_006248811
- Peptide Label: isoform X1
- UniProtKB: A0A8I6G5J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248875   ⟸   XM_006248813
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017453920   ⟸   XM_017598431
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000057958   ⟸   ENSRNOT00000061246
Ensembl Acc Id: ENSRNOP00000081142   ⟸   ENSRNOT00000115393
RefSeq Acc Id: XP_063127644   ⟸   XM_063271574
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A8B5-F1-model_v2 AlphaFold D4A8B5 1-294 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560846 AgrOrtholog
BioCyc Gene G2FUF-20195 BioCyc
Ensembl Genes ENSRNOG00000000905 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061246.4 UniProtKB/TrEMBL
  ENSRNOT00000115393.1 UniProtKB/TrEMBL
InterPro MEDAG/TEX26 UniProtKB/TrEMBL
KEGG Report rno:498133 UniProtKB/TrEMBL
NCBI Gene 498133 ENTREZGENE
PANTHER PTHR33769 UniProtKB/TrEMBL
  TESTIS-EXPRESSED PROTEIN 26 UniProtKB/TrEMBL
PhenoGen Tex26 PhenoGen
RatGTEx ENSRNOG00000000905 RatGTEx
UniProt A0A8I6G5J3 ENTREZGENE, UniProtKB/TrEMBL
  A6K164 ENTREZGENE, UniProtKB/TrEMBL
  D4A8B5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-11 Tex26  testis expressed 26  RGD1560846  similar to hypothetical protein MGC40178  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1560846  similar to hypothetical protein MGC40178   RGD1560846_predicted  similar to hypothetical protein MGC40178 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1560846_predicted  similar to hypothetical protein MGC40178 (predicted)  LOC498133  similar to hypothetical protein MGC40178  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498133  similar to hypothetical protein MGC40178      Symbol and Name status set to provisional 70820 PROVISIONAL