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Gene: Pqbp1 (polyglutamine binding protein 1) Rattus norvegicus

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Symbol:

Pqbp1

Name:

polyglutamine binding protein 1

RGD ID:

1549750

Description:

Enables GTPase binding activity. Involved in positive regulation of non-motile cilium assembly. Located in centrosome and ciliary base. Human ortholog(s) of this gene implicated in Renpenning syndrome. Orthologous to human PQBP1 (polyglutamine binding protein 1); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC302557; polyglutamine tract-binding protein 1; polyglutamine-binding protein 1; PQBP-1; similar to Polyglutamine binding protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PQBP1 (polyglutamine binding protein 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Pqbp1 (polyglutamine binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pqbp1 (polyglutamine binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PQBP1 (polyglutamine binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PQBP1 (polyglutamine binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pqbp1 (polyglutamine binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PQBP1 (polyglutamine binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PQBP1 (polyglutamine binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pqbp1 (polyglutamine binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Pqbp1 (polyglutamine binding protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PQBP1 (polyglutamine binding protein 1)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pqbp1 (polyglutamine binding protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pqbp-1.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	PQBP1	Alliance	DIOPT (InParanoid\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	17,275,445 - 17,280,018 (+)	NCBI		GRCr8
mRatBN7.2	X	14,603,516 - 14,608,091 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	14,603,539 - 14,608,087 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	19,417,449 - 19,421,632 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	20,661,479 - 20,665,662 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	16,926,649 - 16,930,832 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	15,448,570 - 15,453,130 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	15,348,138 - 15,453,130 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	16,229,838 - 16,234,365 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	26,638,460 - 26,642,640 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	14,688,668 - 14,692,848 (+)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial heart septal defect (ISO)

autism spectrum disorder (ISO)

autistic disorder (ISO)

congenital disorder of glycosylation type IIm (ISO)

genetic disease (ISO)

Growth Disorders (ISO)

hereditary spastic paraplegia (ISO)

immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ISO)

intellectual disability (ISO)

microcephaly (ISO)

neurodegeneration with brain iron accumulation 5 (ISO)

Renpenning syndrome (ISO,ISS)

syndromic X-linked intellectual disability Lubs type (ISO)

Thrombocytopenia 1 (ISO)

Wiskott-Aldrich syndrome (ISO)

X-linked epilepsy with variable learning disabilities and behavior disorders (ISO)

X-Linked Intellectual Developmental Disorders (ISO)

X-linked severe congenital neutropenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bleomycin A5 (ISO)

caffeine (ISO)

CGP 52608 (ISO)

cobalt dichloride (ISO)

cocaine (EXP)

diazinon (ISO)

diethylstilbestrol (ISO)

dimethyl sulfoxide (ISO)

diquat (ISO)

disodium selenite (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

fenthion (ISO)

folic acid (ISO)

FR900359 (ISO)

hydrogen peroxide (ISO)

ivermectin (ISO)

ketoconazole (ISO)

methotrexate (ISO)

p-menthan-3-ol (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

resveratrol (ISO)

Soman (EXP)

tamoxifen (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activation of innate immune response (ISO,ISS)

alternative mRNA splicing, via spliceosome (IBA,ISO,ISS)

cellular response to exogenous dsRNA (ISO,ISS)

defense response to virus (ISO,ISS)

innate immune response (IEA)

mRNA processing (IEA)

neuron projection development (ISO,ISS)

positive regulation of defense response to virus by host (ISO,ISS)

positive regulation of non-motile cilium assembly (IMP)

positive regulation of type I interferon production (ISO,ISS)

regulation of dendrite morphogenesis (ISO)

regulation of RNA splicing (ISO)

RNA splicing (IEA)

Cellular Component

centrosome (IDA)

ciliary base (IDA)

cytoplasm (IBA,ISO)

cytoplasmic stress granule (ISO)

neuronal ribonucleoprotein granule (ISO)

nuclear body (IBA)

nuclear speck (IEA,ISO,ISS)

nucleus (IEA,ISO)

Molecular Function

double-stranded DNA binding (ISO,ISS)

GTPase binding (IPI)

protein binding (IPI,ISO)

ribonucleoprotein complex binding (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

spliceosome pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	The XLID protein PQBP1 and the GTPase Dynamin 2 define a signaling link that orchestrates ciliary morphogenesis in postmitotic neurons.	Ikeuchi Y, etal., Cell Rep. 2013 Sep 12;4(5):879-89. doi: 10.1016/j.celrep.2013.07.042. Epub 2013 Aug 29.
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:21933836	PMID:23512658	PMID:26046437

Genomics

Comparative Map Data

Pqbp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	17,275,445 - 17,280,018 (+)	NCBI		GRCr8
mRatBN7.2	X	14,603,516 - 14,608,091 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	14,603,539 - 14,608,087 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	19,417,449 - 19,421,632 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	20,661,479 - 20,665,662 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	16,926,649 - 16,930,832 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	15,448,570 - 15,453,130 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	15,348,138 - 15,453,130 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	16,229,838 - 16,234,365 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	26,638,460 - 26,642,640 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	14,688,668 - 14,692,848 (+)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

PQBP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	48,897,930 - 48,903,143 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	48,890,197 - 48,903,402 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	48,755,213 - 48,760,420 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	48,640,139 - 48,645,364 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	52,903,108 - 52,908,335 (-)	NCBI		Celera
Cytogenetic Map	X	p11.23	NCBI
HuRef	X	46,411,224 - 46,416,455 (+)	NCBI		HuRef
CHM1_1	X	48,786,337 - 48,791,564 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	48,308,411 - 48,313,619 (+)	NCBI		T2T-CHM13v2.0

Pqbp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	7,760,759 - 7,765,469 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	7,760,758 - 7,765,508 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	7,894,519 - 7,899,269 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	7,894,519 - 7,899,269 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	7,471,649 - 7,476,354 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	4,142,378 - 4,147,084 (-)	NCBI		MGSCv36	mm8
MGSCv36	X	7,051,482 - 7,056,187 (-)	NCBI		MGSCv36	mm8
Celera	X	3,570,308 - 3,575,379 (+)	NCBI		Celera
Cytogenetic Map	X	A1.1	NCBI
cM Map	X	3.56	NCBI

Pqbp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955543	430,853 - 434,205 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955543	430,324 - 434,205 (+)	NCBI	ChiLan1.0	ChiLan1.0

PQBP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	50,379,690 - 50,392,268 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	50,383,075 - 50,395,640 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	41,188,244 - 41,200,312 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	49,046,351 - 49,058,587 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	49,053,030 - 49,058,585 (+)	Ensembl	panpan1.1		panPan2

PQBP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	42,056,660 - 42,060,508 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	42,056,708 - 42,121,818 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	16,432,105 - 16,435,949 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	42,192,893 - 42,196,738 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	42,192,898 - 42,196,731 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	42,179,100 - 42,182,944 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	42,167,381 - 42,171,226 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	42,261,589 - 42,265,433 (+)	NCBI		UU_Cfam_GSD_1.0

Pqbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	34,585,253 - 34,589,621 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936721	825,075 - 832,755 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936721	825,171 - 830,010 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PQBP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	42,975,413 - 42,981,724 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	42,976,086 - 42,981,732 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	47,831,705 - 47,837,374 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PQBP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	46,014,664 - 46,020,204 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	46,015,250 - 46,023,988 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666076	11,499,628 - 11,505,316 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pqbp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624893	681,167 - 684,251 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624893	680,929 - 684,251 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Pqbp1
10 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	64
Count of miRNA genes:	58
Interacting mature miRNAs:	61
Transcripts:	ENSRNOT00000010536
Prediction methods:	Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	1448129	31706553	Rat
1298071	Edpm12	Estrogen-dependent pituitary mass QTL 12	3.2		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	X	2927898	47927898	Rat
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1	43491017	Rat
10755455	Coatc13	Coat color QTL 13		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	4406000	49406000	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	4494549	49494549	Rat
634325	Bw13	Body weight QTL 13	0		body mass (VT:0001259)	body weight (CMO:0000012)	X	1447972	20991088	Rat
631204	Gluco15	Glucose level QTL 15		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	1623715	22646544	Rat

Markers in Region

RH129463

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	78,340,697 - 78,340,885 (-)	MAPPER	mRatBN7.2
mRatBN7.2	X	14,607,753 - 14,607,946 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	15,452,793 - 15,452,985	NCBI	Rnor6.0
Rnor_5.0	X	16,234,028 - 16,234,220	UniSTS	Rnor5.0
RGSC_v3.4	X	26,642,303 - 26,642,495	UniSTS	RGSC3.4
Celera	X	14,692,511 - 14,692,703	UniSTS
RH 3.4 Map	8	433.8	UniSTS
Cytogenetic Map	X	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099631	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC059163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010536 ⟹ ENSRNOP00000010536

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	14,603,836 - 14,608,087 (+)	Ensembl
Rnor_6.0 Ensembl	X	15,348,138 - 15,453,130 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077268 ⟹ ENSRNOP00000073914

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	14,603,539 - 14,608,076 (+)	Ensembl
Rnor_6.0 Ensembl	X	15,449,188 - 15,452,937 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115225 ⟹ ENSRNOP00000097998

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	14,603,836 - 14,608,087 (+)	Ensembl

RefSeq Acc Id:

NM_001013957 ⟹ NP_001013979

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,275,838 - 17,280,018 (+)	NCBI
mRatBN7.2	X	14,603,911 - 14,608,091 (+)	NCBI
Rnor_6.0	X	15,448,950 - 15,453,130 (+)	NCBI
Rnor_5.0	X	16,229,838 - 16,234,365 (+)	NCBI
RGSC_v3.4	X	26,638,460 - 26,642,640 (+)	RGD
Celera	X	14,688,668 - 14,692,848 (+)	RGD

Sequence:

show sequence

GGGGGTGTGCCTGGGTCCGTAGAGTTCTGGTGAGACTAGATCTGGCCATACTGCTACGTTATCT
CTTTCATCTCTTAGCACGCATTTTTGTTCTGCTTTTTCAGCTGCTGGTGCAGTTGTTTCTAGAT
CCAGTCAGCAACCCACTATGCCTCTCCCTGTTGCGCTGCAGACCCGCTTGGCAAAGAGGGGCAT
CCTCAAACATCTGGAGCCAGAGCCAGAGGAAGAGATTATTGCTGAGGATTACGATGATGATCCT
GTTGACTATGAGGCCACCAGGATAGAAGGTCTGCCACCAAGCTGGTACAAGGTGTTTGACCCTT
CTTGTGGACTCCCTTACTATTGGAATGTGGAGACAGACCTCGTGTCCTGGCTCTCACCACATGA
TCCCAACTTTGTGGTTAGCAAATCTGCCAAGAAACTCAGGAACAGTAATGCAGATGCTGAGGAC
AAGTCGGAGCGGAATCTTGAAAAGGTTGACAGAAATCATGAGAAGTCAGATCGTAGTCACGAGA
AGCCAGACAGAAGCCATGAGAAGGCAGACCGAAACCACGAGAAGTCTGACCGAGAACGAGAGCG
GAACTATGACAAGGTAGACAGAGAGAGAGATCGGGATAGGGAACGAGAACGGGCATTTGACAAG
GCAGACCGGGAAGATGGCAAAGACCGGCGCCACCATCGCAGAGAGGAACTGGCTCCTTACCCCA
AGAACAAGAAAGCGACGAGCCGGAAAGATGAAGAATTAGACCCCATGGACCCCAGCTCATACTC
AGATGCACCCCGGGGCACATGGTCAACAGGACTACCCAAGAGGAATGAGGCCAAGACTGGGGCT
GACACGACAGCGGCTGGGCCTCTCTTCCAGCAGCGCCCATACCCTTCCCCTGGGGCTGTGCTCC
GCGCCAATGCAGAAGCCTCCCGCAGCAAACAGCAGGACTGAATTTGTGTTCCCTGTAGCTTTGG
CAGTCATTTCTGTGTTGCTTTCTTGCGGCTCTGGAGTAGGACCCATGGCTTCAGACGTGCTGAA
TAATTAGTCCACCAGTGAGCTACACTCCCAGCCCCCTTGGTGTTGTTTTATGAACAACAAGCCC
TTGTTGGTGTTGTTTAATAAAAGCTTTTTGGGGAACCATCTCAAAAAAAAAAAAAAAAAAAAAA
AAAAAA

hide sequence

RefSeq Acc Id:

XM_006256707 ⟹ XP_006256769

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,275,446 - 17,280,016 (+)	NCBI
mRatBN7.2	X	14,603,516 - 14,608,089 (+)	NCBI
Rnor_6.0	X	15,448,570 - 15,453,128 (+)	NCBI
Rnor_5.0	X	16,229,838 - 16,234,365 (+)	NCBI

Sequence:

show sequence

CATCCGTTCCTGTAAGCCCCCGAGTCGACCAGTTAATTGTAGCTGGGGAGAGTTGAGGAGCATA
TTGTGCTTTAAAACAAGAGCCCCTCGGTGCTGGTAAGCGTTGTGACAACGAAGGAGAGGAGGTT
TCTAGATCCAGTCAGCAACCCACTATGCCTCTCCCTGTTGCGCTGCAGACCCGCTTGGCAAAGA
GGGGCATCCTCAAACATCTGGAGCCAGAGCCAGAGGAAGAGATTATTGCTGAGGATTACGATGA
TGATCCTGTTGACTATGAGGCCACCAGGATAGAAGGTCTGCCACCAAGCTGGTACAAGGTGTTT
GACCCTTCTTGTGGACTCCCTTACTATTGGAATGTGGAGACAGACCTCGTGTCCTGGCTCTCAC
CACATGATCCCAACTTTGTGGTTAGCAAATCTGCCAAGAAACTCAGGAACAGTAATGCAGATGC
TGAGGACAAGTCGGAGCGGAATCTTGAAAAGGTTGACAGAAATCATGAGAAGTCAGATCGTAGT
CACGAGAAGCCAGACAGAAGCCATGAGAAGGCAGACCGAAACCACGAGAAGTCTGACCGAGAAC
GAGAGCGGAACTATGACAAGGTAGACAGAGAGAGAGATCGGGATAGGGAACGAGAACGGGCATT
TGACAAGGCAGACCGGGAAGATGGCAAAGACCGGCGCCACCATCGCAGAGAGGACCTGGCTCCT
TACCCCAAGAACAAGAAAGCGACGAGCCGGAAAGATGAAGAATTAGACCCCATGGACCCCAGCT
CATACTCAGATGCACCCCGGGGCACATGGTCAACAGGACTACCCAAGAGGAATGAGGCCAAGAC
TGGGGCTGACACGACAGCGGCTGGGCCTCTCTTCCAGCAGCGCCCATACCCTTCCCCTGGGGCT
GTGCTCCGCGCCAATGCAGAAGCCTCCCGCAGCAAACAGCAGGACTGAATTTGTGTTCCCTGTA
GCTTTGGCAGTCATTTCTGTGTTGCTTTCTTGCGGCTCTGGAGTAGGACCCATGGCTTCAGACG
TGCTGAATAATTAGTCCACCAGTGAGCTACACTCCCAGCCCCCTTGGTGTTGTTTTATGAACAA
CAAGCCCTTGTTGGTGTTGTTTAATAAAAGCTTTTTGGGGAACCATC

hide sequence

RefSeq Acc Id:

XM_006256708 ⟹ XP_006256770

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,275,445 - 17,280,016 (+)	NCBI
mRatBN7.2	X	14,603,535 - 14,608,089 (+)	NCBI
Rnor_6.0	X	15,448,570 - 15,453,128 (+)	NCBI
Rnor_5.0	X	16,229,838 - 16,234,365 (+)	NCBI

Sequence:

show sequence

CATCCGTTCCTGTAAGCCCCCGAGTCGACCAGTTAATTGTAGCTGGGGAGAGTTGAGGAGCATA
TTGTGCTTTAAAACAAGAGCCCCTCGGTGCTGGTAAGCGTTGTGACAACGAAGGAGAGGAGGAT
CCAGTCAGCAACCCACTATGCCTCTCCCTGTTGCGCTGCAGACCCGCTTGGCAAAGAGGGGCAT
CCTCAAACATCTGGAGCCAGAGCCAGAGGAAGAGATTATTGCTGAGGATTACGATGATGATCCT
GTTGACTATGAGGCCACCAGGATAGAAGGTCTGCCACCAAGCTGGTACAAGGTGTTTGACCCTT
CTTGTGGACTCCCTTACTATTGGAATGTGGAGACAGACCTCGTGTCCTGGCTCTCACCACATGA
TCCCAACTTTGTGGTTAGCAAATCTGCCAAGAAACTCAGGAACAGTAATGCAGATGCTGAGGAC
AAGTCGGAGCGGAATCTTGAAAAGGTTGACAGAAATCATGAGAAGTCAGATCGTAGTCACGAGA
AGCCAGACAGAAGCCATGAGAAGGCAGACCGAAACCACGAGAAGTCTGACCGAGAACGAGAGCG
GAACTATGACAAGGTAGACAGAGAGAGAGATCGGGATAGGGAACGAGAACGGGCATTTGACAAG
GCAGACCGGGAAGATGGCAAAGACCGGCGCCACCATCGCAGAGAGGACCTGGCTCCTTACCCCA
AGAACAAGAAAGCGACGAGCCGGAAAGATGAAGAATTAGACCCCATGGACCCCAGCTCATACTC
AGATGCACCCCGGGGCACATGGTCAACAGGACTACCCAAGAGGAATGAGGCCAAGACTGGGGCT
GACACGACAGCGGCTGGGCCTCTCTTCCAGCAGCGCCCATACCCTTCCCCTGGGGCTGTGCTCC
GCGCCAATGCAGAAGCCTCCCGCAGCAAACAGCAGGACTGAATTTGTGTTCCCTGTAGCTTTGG
CAGTCATTTCTGTGTTGCTTTCTTGCGGCTCTGGAGTAGGACCCATGGCTTCAGACGTGCTGAA
TAATTAGTCCACCAGTGAGCTACACTCCCAGCCCCCTTGGTGTTGTTTTATGAACAACAAGCCC
TTGTTGGTGTTGTTTAATAAAAGCTTTTTGGGGAACCATC

hide sequence

RefSeq Acc Id:

XM_017601994 ⟹ XP_017457483

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,275,655 - 17,280,016 (+)	NCBI
mRatBN7.2	X	14,603,716 - 14,608,089 (+)	NCBI
Rnor_6.0	X	15,448,725 - 15,453,128 (+)	NCBI

Sequence:

show sequence

AGTTGTACTGATAAGGCCGGGGTGTAAGCTTTCTTTTAAAGCTGGAGATGGCGTTGGCGTTTTG
CCTCCCCCATCCTAGCGCATTGGTTTCGCCCACCGTGTGGATTTTGAGAAACGTTGGGTGATCC
CATTTCTGGGTTGCGGGTGTGTAGCATTTGGTGTCTTGGGCTGTGGGTGGAGCCTTGATCTAGA
GAGGAACTGGGTCTTGGGTCCATCCGGTCTCCGGTGCCTGGGTCCGTAGAGTTCTGGTGAGACT
AGATCTGGCCATACTGCTACGTTATCTCTTTCATCTCTTAGCACGCATTTTTGTTCTGCTTTTT
CAGCTGCTGGTGCAGTTGGTAGTTTCTAGATCCAGTCAGCAACCCACTATGCCTCTCCCTGTTG
CGCTGCAGACCCGCTTGGCAAAGAGGGGCATCCTCAAACATCTGGAGCCAGAGCCAGAGGAAGA
GATTATTGCTGAGGATTACGATGATGATCCTGTTGACTATGAGGCCACCAGGATAGAAGGTCTG
CCACCAAGCTGGTACAAGGTGTTTGACCCTTCTTGTGGACTCCCTTACTATTGGAATGTGGAGA
CAGACCTCGTGTCCTGGCTCTCACCACATGATCCCAACTTTGTGGTTAGCAAATCTGCCAAGAA
ACTCAGGAACAGTAATGCAGATGCTGAGGACAAGTCGGAGCGGAATCTTGAAAAGGTTGACAGA
AATCATGAGAAGTCAGATCGTAGTCACGAGAAGCCAGACAGAAGCCATGAGAAGGCAGACCGAA
ACCACGAGAAGTCTGACCGAGAACGAGAGCGGAACTATGACAAGGTAGACAGAGAGAGAGATCG
GGATAGGGAACGAGAACGGGCATTTGACAAGGCAGACCGGGAAGATGGCAAAGACCGGCGCCAC
CATCGCAGAGAGGACCTGGCTCCTTACCCCAAGAACAAGAAAGCGACGAGCCGGAAAGATGAAG
AATTAGACCCCATGGACCCCAGCTCATACTCAGATGCACCCCGGGGCACATGGTCAACAGGACT
ACCCAAGAGGAATGAGGCCAAGACTGGGGCTGACACGACAGCGGCTGGGCCTCTCTTCCAGCAG
CGCCCATACCCTTCCCCTGGGGCTGTGCTCCGCGCCAATGCAGAAGCCTCCCGCAGCAAACAGC
AGGACTGAATTTGTGTTCCCTGTAGCTTTGGCAGTCATTTCTGTGTTGCTTTCTTGCGGCTCTG
GAGTAGGACCCATGGCTTCAGACGTGCTGAATAATTAGTCCACCAGTGAGCTACACTCCCAGCC
CCCTTGGTGTTGTTTTATGAACAACAAGCCCTTGTTGGTGTTGTTTAATAAAAGCTTTTTGGGG
AACCATC

hide sequence

RefSeq Acc Id:

XM_017601995 ⟹ XP_017457484

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,275,492 - 17,280,016 (+)	NCBI
mRatBN7.2	X	14,603,541 - 14,608,089 (+)	NCBI
Rnor_6.0	X	15,448,570 - 15,453,128 (+)	NCBI

Sequence:

show sequence

CATCCGTTCCTGTAAGCCCCCGAGTCGACCAGTTAATTGTAGCTGGGGAGAGTTGAGGAGCATA
TTGTGCTTTAAAACAAGAGCCCCTCGGTGCTGTTTCTAGATCCAGTCAGCAACCCACTATGCCT
CTCCCTGTTGCGCTGCAGACCCGCTTGGCAAAGAGGGGCATCCTCAAACATCTGGAGCCAGAGC
CAGAGGAAGAGATTATTGCTGAGGATTACGATGATGATCCTGTTGACTATGAGGCCACCAGGAT
AGAAGGTCTGCCACCAAGCTGGTACAAGGTGTTTGACCCTTCTTGTGGACTCCCTTACTATTGG
AATGTGGAGACAGACCTCGTGTCCTGGCTCTCACCACATGATCCCAACTTTGTGGTTAGCAAAT
CTGCCAAGAAACTCAGGAACAGTAATGCAGATGCTGAGGACAAGTCGGAGCGGAATCTTGAAAA
GGTTGACAGAAATCATGAGAAGTCAGATCGTAGTCACGAGAAGCCAGACAGAAGCCATGAGAAG
GCAGACCGAAACCACGAGAAGTCTGACCGAGAACGAGAGCGGAACTATGACAAGGTAGACAGAG
AGAGAGATCGGGATAGGGAACGAGAACGGGCATTTGACAAGGCAGACCGGGAAGATGGCAAAGA
CCGGCGCCACCATCGCAGAGAGGACCTGGCTCCTTACCCCAAGAACAAGAAAGCGACGAGCCGG
AAAGATGAAGAATTAGACCCCATGGACCCCAGCTCATACTCAGATGCACCCCGGGGCACATGGT
CAACAGGACTACCCAAGAGGAATGAGGCCAAGACTGGGGCTGACACGACAGCGGCTGGGCCTCT
CTTCCAGCAGCGCCCATACCCTTCCCCTGGGGCTGTGCTCCGCGCCAATGCAGAAGCCTCCCGC
AGCAAACAGCAGGACTGAATTTGTGTTCCCTGTAGCTTTGGCAGTCATTTCTGTGTTGCTTTCT
TGCGGCTCTGGAGTAGGACCCATGGCTTCAGACGTGCTGAATAATTAGTCCACCAGTGAGCTAC
ACTCCCAGCCCCCTTGGTGTTGTTTTATGAACAACAAGCCCTTGTTGGTGTTGTTTAATAAAAG
CTTTTTGGGGAACCATC

hide sequence

RefSeq Acc Id:

XM_017601996 ⟹ XP_017457485

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,275,653 - 17,280,016 (+)	NCBI
mRatBN7.2	X	14,603,715 - 14,608,089 (+)	NCBI
Rnor_6.0	X	15,448,725 - 15,453,128 (+)	NCBI

Sequence:

show sequence

AGTTGTACTGATAAGGCCGGGGTGTAAGCTTTCTTTTAAAGCTGGAGATGGCGTTGGCGTTTTG
CCTCCCCCATCCTAGCGCATTGGTTTCGCCCACCGTGTGGATTTTGAGAAACGTTGGGTGATCC
CATTTCTGGGTTGCGGGTGTGTAGCATTTGGTGTCTTGGGCTGTGGGTGGAGCCTTGATCTAGA
GAGGAACTGGGTCTTGGGTCCATCCGGTCTCCGGTGCCTGGGTCCGTAGAGTTCTGGTGAGACT
AGATCTGGCCATACTGCTACGTTATCTCTTTCATCTCTTAGCACGCATTTTTGTTCTGCTTTTT
CAGCTGCTGGTGCAGTTGATCCAGTCAGCAACCCACTATGCCTCTCCCTGTTGCGCTGCAGACC
CGCTTGGCAAAGAGGGGCATCCTCAAACATCTGGAGCCAGAGCCAGAGGAAGAGATTATTGCTG
AGGATTACGATGATGATCCTGTTGACTATGAGGCCACCAGGATAGAAGGTCTGCCACCAAGCTG
GTACAAGGTGTTTGACCCTTCTTGTGGACTCCCTTACTATTGGAATGTGGAGACAGACCTCGTG
TCCTGGCTCTCACCACATGATCCCAACTTTGTGGTTAGCAAATCTGCCAAGAAACTCAGGAACA
GTAATGCAGATGCTGAGGACAAGTCGGAGCGGAATCTTGAAAAGGTTGACAGAAATCATGAGAA
GTCAGATCGTAGTCACGAGAAGCCAGACAGAAGCCATGAGAAGGCAGACCGAAACCACGAGAAG
TCTGACCGAGAACGAGAGCGGAACTATGACAAGGTAGACAGAGAGAGAGATCGGGATAGGGAAC
GAGAACGGGCATTTGACAAGGCAGACCGGGAAGATGGCAAAGACCGGCGCCACCATCGCAGAGA
GGACCTGGCTCCTTACCCCAAGAACAAGAAAGCGACGAGCCGGAAAGATGAAGAATTAGACCCC
ATGGACCCCAGCTCATACTCAGATGCACCCCGGGGCACATGGTCAACAGGACTACCCAAGAGGA
ATGAGGCCAAGACTGGGGCTGACACGACAGCGGCTGGGCCTCTCTTCCAGCAGCGCCCATACCC
TTCCCCTGGGGCTGTGCTCCGCGCCAATGCAGAAGCCTCCCGCAGCAAACAGCAGGACTGAATT
TGTGTTCCCTGTAGCTTTGGCAGTCATTTCTGTGTTGCTTTCTTGCGGCTCTGGAGTAGGACCC
ATGGCTTCAGACGTGCTGAATAATTAGTCCACCAGTGAGCTACACTCCCAGCCCCCTTGGTGTT
GTTTTATGAACAACAAGCCCTTGTTGGTGTTGTTTAATAAAAGCTTTTTGGGGAACCATC

hide sequence

RefSeq Acc Id:

XM_039099631 ⟹ XP_038955559

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,275,655 - 17,280,016 (+)	NCBI
mRatBN7.2	X	14,603,716 - 14,608,089 (+)	NCBI

RefSeq Acc Id:

XM_063279920 ⟹ XP_063135990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,275,655 - 17,280,016 (+)	NCBI

RefSeq Acc Id:

XM_063279921 ⟹ XP_063135991

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,275,484 - 17,280,016 (+)	NCBI

RefSeq Acc Id:

XM_063279922 ⟹ XP_063135992

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,275,653 - 17,280,016 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013979	(Get FASTA)	NCBI Sequence Viewer
	NP_001420934	(Get FASTA)	NCBI Sequence Viewer
	NP_001420935	(Get FASTA)	NCBI Sequence Viewer
	NP_001420936	(Get FASTA)	NCBI Sequence Viewer
	XP_006256769	(Get FASTA)	NCBI Sequence Viewer
	XP_006256770	(Get FASTA)	NCBI Sequence Viewer
	XP_017457483	(Get FASTA)	NCBI Sequence Viewer
	XP_017457484	(Get FASTA)	NCBI Sequence Viewer
	XP_017457485	(Get FASTA)	NCBI Sequence Viewer
	XP_038955559	(Get FASTA)	NCBI Sequence Viewer
	XP_063135990	(Get FASTA)	NCBI Sequence Viewer
	XP_063135991	(Get FASTA)	NCBI Sequence Viewer
	XP_063135992	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH59163	(Get FASTA)	NCBI Sequence Viewer
	EDL83813	(Get FASTA)	NCBI Sequence Viewer
	EDL83814	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010536.3
	ENSRNOP00000073914.2
	ENSRNOP00000097998.1
	ENSRNOP00055038413
	ENSRNOP00060030206
	ENSRNOP00065013931
GenBank Protein	Q6PCT5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001013979 ⟸ NM_001013957

- UniProtKB:

Q6PCT5 (UniProtKB/Swiss-Prot), G3V705 (UniProtKB/TrEMBL), A6KP66 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRIEGLPPSWYKVFDPSCGLPY
YWNVETDLVSWLSPHDPNFVVSKSAKKLRNSNADAEDKSERNLEKVDRNHEKSDRSHEKPDRSH
EKADRNHEKSDRERERNYDKVDRERDRDRERERAFDKADREDGKDRRHHRREELAPYPKNKKAT
SRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANAEA
SRSKQQD

hide sequence

RefSeq Acc Id:	XP_006256769 ⟸ XM_006256707
- Peptide Label:	isoform X1
- UniProtKB:	Q6PCT5 (UniProtKB/Swiss-Prot), G3V705 (UniProtKB/TrEMBL), A6KP66 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRIEGLPPSWYKVFDPSCGLPY YWNVETDLVSWLSPHDPNFVVSKSAKKLRNSNADAEDKSERNLEKVDRNHEKSDRSHEKPDRSH EKADRNHEKSDRERERNYDKVDRERDRDRERERAFDKADREDGKDRRHHRREDLAPYPKNKKAT SRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANAEA SRSKQQD hide sequence

RefSeq Acc Id:	XP_006256770 ⟸ XM_006256708
- Peptide Label:	isoform X1
- UniProtKB:	Q6PCT5 (UniProtKB/Swiss-Prot), G3V705 (UniProtKB/TrEMBL), A6KP66 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRIEGLPPSWYKVFDPSCGLPY YWNVETDLVSWLSPHDPNFVVSKSAKKLRNSNADAEDKSERNLEKVDRNHEKSDRSHEKPDRSH EKADRNHEKSDRERERNYDKVDRERDRDRERERAFDKADREDGKDRRHHRREDLAPYPKNKKAT SRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANAEA SRSKQQD hide sequence

RefSeq Acc Id:	XP_017457484 ⟸ XM_017601995
- Peptide Label:	isoform X1
- UniProtKB:	Q6PCT5 (UniProtKB/Swiss-Prot), G3V705 (UniProtKB/TrEMBL), A6KP66 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRIEGLPPSWYKVFDPSCGLPY YWNVETDLVSWLSPHDPNFVVSKSAKKLRNSNADAEDKSERNLEKVDRNHEKSDRSHEKPDRSH EKADRNHEKSDRERERNYDKVDRERDRDRERERAFDKADREDGKDRRHHRREDLAPYPKNKKAT SRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANAEA SRSKQQD hide sequence

RefSeq Acc Id:	XP_017457483 ⟸ XM_017601994
- Peptide Label:	isoform X1
- UniProtKB:	Q6PCT5 (UniProtKB/Swiss-Prot), G3V705 (UniProtKB/TrEMBL), A6KP66 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRIEGLPPSWYKVFDPSCGLPY YWNVETDLVSWLSPHDPNFVVSKSAKKLRNSNADAEDKSERNLEKVDRNHEKSDRSHEKPDRSH EKADRNHEKSDRERERNYDKVDRERDRDRERERAFDKADREDGKDRRHHRREDLAPYPKNKKAT SRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANAEA SRSKQQD hide sequence

RefSeq Acc Id:	XP_017457485 ⟸ XM_017601996
- Peptide Label:	isoform X1
- UniProtKB:	Q6PCT5 (UniProtKB/Swiss-Prot), G3V705 (UniProtKB/TrEMBL), A6KP66 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPLPVALQTRLAKRGILKHLEPEPEEEIIAEDYDDDPVDYEATRIEGLPPSWYKVFDPSCGLPY YWNVETDLVSWLSPHDPNFVVSKSAKKLRNSNADAEDKSERNLEKVDRNHEKSDRSHEKPDRSH EKADRNHEKSDRERERNYDKVDRERDRDRERERAFDKADREDGKDRRHHRREDLAPYPKNKKAT SRKDEELDPMDPSSYSDAPRGTWSTGLPKRNEAKTGADTTAAGPLFQQRPYPSPGAVLRANAEA SRSKQQD hide sequence

Ensembl Acc Id:

ENSRNOP00000073914 ⟸ ENSRNOT00000077268

Ensembl Acc Id:

ENSRNOP00000010536 ⟸ ENSRNOT00000010536

RefSeq Acc Id:	XP_038955559 ⟸ XM_039099631
- Peptide Label:	isoform X1
- UniProtKB:	Q6PCT5 (UniProtKB/Swiss-Prot), G3V705 (UniProtKB/TrEMBL), A6KP66 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000097998 ⟸ ENSRNOT00000115225

RefSeq Acc Id:	XP_063135991 ⟸ XM_063279921
- Peptide Label:	isoform X1
- UniProtKB:	A6KP66 (UniProtKB/TrEMBL), G3V705 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135992 ⟸ XM_063279922
- Peptide Label:	isoform X1
- UniProtKB:	A6KP66 (UniProtKB/TrEMBL), G3V705 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135990 ⟸ XM_063279920
- Peptide Label:	isoform X1
- UniProtKB:	A6KP66 (UniProtKB/TrEMBL), G3V705 (UniProtKB/TrEMBL)

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6PCT5-F1-model_v2	AlphaFold	Q6PCT5	1-263	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1549750	AgrOrtholog
BioCyc Gene	G2FUF-2928	BioCyc
Ensembl Genes	ENSRNOG00000007766	Ensembl, UniProtKB/TrEMBL
	ENSRNOG00055027058	UniProtKB/Swiss-Prot
	ENSRNOG00060021122	UniProtKB/Swiss-Prot
	ENSRNOG00065011256	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000010536.6	UniProtKB/TrEMBL
	ENSRNOT00000077268.2	UniProtKB/TrEMBL
	ENSRNOT00000115225.1	UniProtKB/TrEMBL
	ENSRNOT00055046778	UniProtKB/Swiss-Prot
	ENSRNOT00060036695	UniProtKB/Swiss-Prot
	ENSRNOT00065018252	UniProtKB/Swiss-Prot
Gene3D-CATH	2.20.70.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Glutaredoxin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:6889015	IMAGE-MGC_LOAD
InterPro	WW_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WW_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:302557	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:73001	IMAGE-MGC_LOAD
NCBI Gene	302557	ENTREZGENE
PANTHER	12 KDA HEAT SHOCK PROTEIN	UniProtKB/Swiss-Prot
	12 KDA HEAT SHOCK PROTEIN	UniProtKB/Swiss-Prot
	12 KDA HEAT SHOCK PROTEIN	UniProtKB/TrEMBL
	12 KDA HEAT SHOCK PROTEIN	UniProtKB/TrEMBL
PhenoGen	Pqbp1	PhenoGen
PROSITE	WW_DOMAIN_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000007766	RatGTEx
	ENSRNOG00055027058	RatGTEx
	ENSRNOG00060021122	RatGTEx
	ENSRNOG00065011256	RatGTEx
SMART	SM00456	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF51045	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K6R5_RAT	UniProtKB/TrEMBL
	A0A8I6AS89_RAT	UniProtKB/TrEMBL
	A6KP65_RAT	UniProtKB/TrEMBL
	A6KP66	ENTREZGENE, UniProtKB/TrEMBL
	G3V705	ENTREZGENE, UniProtKB/TrEMBL
	PQBP1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Pqbp1	polyglutamine binding protein 1	LOC302557	similar to Polyglutamine binding protein 1	Symbol and Name updated	1299863	APPROVED
2005-09-15	LOC302557	similar to Polyglutamine binding protein 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)