Cdyl (chromodomain Y-like) - Rat Genome Database

Name: Cdyl
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Cdyl (chromodomain Y-like) Rattus norvegicus

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Symbol:

Cdyl

Name:

chromodomain Y-like

RGD ID:

1549745

Description:

Predicted to enable several functions, including crotonyl-CoA hydratase activity; identical protein binding activity; and transcription corepressor activity. Predicted to be involved in negative regulation of peptidyl-lysine crotonylation; random inactivation of X chromosome; and spermatid development. Predicted to be located in chromosome; cytoplasm; and nuclear speck. Predicted to be active in nucleus. Orthologous to human CDYL (chromodomain Y like); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

CDY-like; chromodomain protein, Y chromosome-like; chromodomain protein, Y-like; chromodomain Y-like protein; crotonyl-CoA hydratase; LOC361237; putative tubulin acetyltransferase Cdyl; similar to testis-specific chromodomain Y-like protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDYL (chromodomain Y like)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cdyl (chromodomain protein, Y chromosome-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cdyl (chromodomain Y like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDYL (chromodomain Y like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CDYL (chromodomain Y like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cdyl (chromodomain Y like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDYL (chromodomain Y like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDYL (chromodomain Y like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdyl (chromodomain Y like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CDY2A (chromodomain Y-linked 2A)	HGNC	Panther, Treefam
Homo sapiens (human):	CDY1 (chromodomain Y-linked 1)	HGNC	Panther, Treefam
Homo sapiens (human):	CDY1B (chromodomain Y-linked 1B)	HGNC	Treefam
Homo sapiens (human):	CDY2B (chromodomain Y-linked 2B)	HGNC	Treefam
Homo sapiens (human):	SEPTIN11 (septin 11)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Cdyl (chromodomain protein, Y chromosome-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CDYL (chromodomain Y like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cdyl (chromodomain protein, Y-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	DCI1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ECI1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	B0272.4	Alliance	DIOPT (Ensembl Compara\|OrthoFinder)
Drosophila melanogaster (fruit fly):	Dci	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	cdyl	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	29,188,697 - 29,409,805 (-)	NCBI		GRCr8
mRatBN7.2	17	28,982,009 - 29,204,345 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	28,982,037 - 29,204,313 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	28,842,955 - 29,058,523 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	30,446,503 - 30,662,290 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	28,818,438 - 29,033,458 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	29,672,925 - 29,895,416 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	29,674,164 - 29,895,386 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	31,568,495 - 31,795,097 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	35,290,255 - 35,517,646 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	28,583,965 - 28,798,437 (-)	NCBI		Celera
Cytogenetic Map	17	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

epilepsy (ISS)

lung small cell carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

calcitriol (ISO)

cannabidiol (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

dorsomorphin (ISO)

entinostat (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

furan (EXP)

glyphosate (EXP)

isoprenaline (ISO)

L-methionine (ISO)

lead nitrate (EXP)

methoxychlor (EXP)

methylmercury chloride (ISO)

N,N-diethyl-m-toluamide (EXP)

paracetamol (EXP,ISO)

permethrin (EXP)

pirinixic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

tributylstannane (EXP)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of DNA-templated transcription (IEA)

negative regulation of peptidyl-lysine crotonylation (IEA,ISO,ISS)

random inactivation of X chromosome (IEA,ISO,ISS)

spermatid development (IEA,ISO,ISS)

Cellular Component

chromosome (IEA,ISO,ISS)

cytoplasm (IEA,ISO,ISS)

nuclear speck (IEA,ISO)

nucleus (IBA,IEA,ISO,ISS)

Molecular Function

acyltransferase activity (IEA)

chromatin binding (IEA,ISO,ISS)

crotonyl-CoA hydratase activity (IEA,ISO,ISS)

identical protein binding (ISO)

methylated histone binding (IEA,ISO,ISS)

protein binding (ISO)

protein-macromolecule adaptor activity (ISO)

transcription corepressor activity (IBA,IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:18450745	PMID:19061646	PMID:22009739	PMID:24144980	PMID:27932493	PMID:28681565	PMID:28803779	PMID:28842554	PMID:34888944

Genomics

Comparative Map Data

Cdyl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	29,188,697 - 29,409,805 (-)	NCBI		GRCr8
mRatBN7.2	17	28,982,009 - 29,204,345 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	28,982,037 - 29,204,313 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	28,842,955 - 29,058,523 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	30,446,503 - 30,662,290 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	28,818,438 - 29,033,458 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	29,672,925 - 29,895,416 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	29,674,164 - 29,895,386 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	31,568,495 - 31,795,097 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	35,290,255 - 35,517,646 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	28,583,965 - 28,798,437 (-)	NCBI		Celera
Cytogenetic Map	17	p12	NCBI

CDYL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	4,706,138 - 4,955,544 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	4,706,159 - 4,955,551 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	4,706,372 - 4,955,778 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	4,651,392 - 4,900,777 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	6	5,934,977 - 6,184,408 (+)	NCBI		Celera
Cytogenetic Map	6	p25.1	NCBI
HuRef	6	4,582,442 - 4,832,036 (+)	NCBI		HuRef
CHM1_1	6	4,708,950 - 4,958,157 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	4,575,080 - 4,824,553 (+)	NCBI		T2T-CHM13v2.0

Cdyl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	35,843,801 - 36,058,047 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	35,843,816 - 36,058,046 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	35,659,818 - 35,874,064 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	35,659,833 - 35,874,063 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	35,751,731 - 35,965,933 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	35,667,345 - 35,881,089 (+)	NCBI		MGSCv36	mm8
Celera	13	36,773,088 - 36,987,151 (+)	NCBI		Celera
Cytogenetic Map	13	A3.3	NCBI
cM Map	13	14.39	NCBI

Cdyl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955465	8,568,121 - 8,780,569 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955465	8,570,197 - 8,780,551 (-)	NCBI	ChiLan1.0	ChiLan1.0

CDYL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	19,400,677 - 19,584,327 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	15,404,782 - 15,588,429 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	4,607,088 - 4,790,742 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	4,794,549 - 4,976,777 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	4,737,306 - 4,976,777 (+)	Ensembl	panpan1.1		panPan2

CDYL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	4,844,757 - 5,074,967 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	4,844,779 - 5,073,670 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	4,853,975 - 5,083,877 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	5,118,280 - 5,146,543 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	35	4,964,027 - 5,145,246 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	35	4,781,582 - 5,011,396 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	4,803,787 - 5,036,379 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	6,137,854 - 6,368,214 (+)	NCBI		UU_Cfam_GSD_1.0

Cdyl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	19,256,632 - 19,476,186 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936534	7,525,612 - 7,594,813 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936534	7,525,618 - 7,601,184 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDYL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	2,846,090 - 2,966,240 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	2,845,903 - 2,967,537 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	3,054,156 - 3,070,657 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDYL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	67,222,212 - 67,396,735 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	67,222,210 - 67,396,630 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	4,730,625 - 4,904,706 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdyl
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624756	20,261,019 - 20,406,338 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624756	20,261,150 - 20,471,697 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cdyl
1448 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	119
Count of miRNA genes:	99
Interacting mature miRNAs:	105
Transcripts:	ENSRNOT00000048757
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	69599340	Rat
2300002	Iddm36	Insulin dependent diabetes mellitus QTL 36	1.98		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	9991286	40540197	Rat
1354640	Scl32	Serum cholesterol level QTL 32	5.4		blood HDL cholesterol amount (VT:0000184)	blood high density lipoprotein cholesterol level (CMO:0000052)	17	15781592	60781592	Rat
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
1300123	Bp194	Blood pressure QTL 194	2.82		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	2115149	34551001	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	28409147	73409147	Rat
2302377	Scl61	Serum cholesterol level QTL 61	4.36		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	17	27389946	53481766	Rat
70157	Niddm32	Non-insulin dependent diabetes mellitus QTL 32	4.34		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	22454924	50909196	Rat
1354651	Lmblg2	Limb length QTL 2	6		tibia length (VT:0004357)	tibia length (CMO:0000450)	17	4299130	69599340	Rat
1354628	Stl13	Serum triglyceride level QTL 13	3.8		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	21293039	60781592	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27027949	56836890	Rat
10401807	Kidm52	Kidney mass QTL 52			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	1	31701463	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4528038	49528038	Rat
1354630	Cm34	Cardiac mass QTL 34	8.7		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	4299130	69599340	Rat
61394	Bp8	Blood pressure QTL 8	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	23080567	59555013	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	68653184	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24184890	79524188	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	4299130	69599340	Rat
1354613	Kidm14	Kidney mass QTL 14	6.2		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	17	4299130	35837242	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15330613	55836425	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	28409147	73409147	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4528038	49528038	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23653184	68653184	Rat
70184	BpQTLcluster14	Blood pressure QTL cluster 14	3.38		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	1	31990913	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23653184	68653184	Rat
4889891	Eae32	Experimental allergic encephalomyelitis QTL 32	4.8	0.0002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	27027949	36146731	Rat
4889955	Bss93	Bone structure and strength QTL 93	4.4		tibia size trait (VT:0100001)	tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)	17	27027949	60463643	Rat
2303561	Bw91	Body weight QTL 91	2		body mass (VT:0001259)	body weight (CMO:0000012)	17	8868462	53868462	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23653184	70974005	Rat
631207	Niddm41	Non-insulin dependent diabetes mellitus QTL 41			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	1	37830672	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23653184	68653184	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23653184	68653184	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	24599340	69599340	Rat
1354596	Bw32	Body weight QTL 32	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	17	4299130	60781592	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	69599340	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat
7488966	Bp370	Blood pressure QTL 370		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23653184	57246843	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	60781592	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			23930421	79524188	Rat
1354659	Scl68	Serum cholesterol level QTL 68	3.9		blood VLDL cholesterol amount (VT:0005144)	blood very low density lipoprotein cholesterol level (CMO:0000648)	17	15781592	60781592	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	23930421	79524188	Rat

Markers in Region

D17Rat67

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	29,086,993 - 29,087,143 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	29,777,902 - 29,778,051	NCBI	Rnor6.0
Rnor_5.0	17	31,673,388 - 31,673,537	UniSTS	Rnor5.0
RGSC_v3.4	17	35,394,196 - 35,394,345	UniSTS	RGSC3.4
RGSC_v3.4	17	35,394,111 - 35,394,474	RGD	RGSC3.4
RGSC_v3.1	17	35,397,037 - 35,397,186	RGD
Celera	17	28,687,706 - 28,687,855	UniSTS
RH 3.4 Map	17	354.4	UniSTS
RH 3.4 Map	17	354.4	RGD
RH 2.0 Map	17	247.7	RGD
SHRSP x BN Map	17	22.95	RGD
Cytogenetic Map	17	p12	UniSTS

D17Got39

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	29,146,299 - 29,146,451 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	29,837,205 - 29,837,356	NCBI	Rnor6.0
Rnor_5.0	17	31,731,535 - 31,731,686	UniSTS	Rnor5.0
RGSC_v3.4	17	35,456,061 - 35,456,212	UniSTS	RGSC3.4
RGSC_v3.4	17	35,456,060 - 35,456,212	RGD	RGSC3.4
RGSC_v3.1	17	35,458,901 - 35,459,053	RGD
Celera	17	28,747,100 - 28,747,251	UniSTS
RH 3.4 Map	17	327.6	RGD
RH 3.4 Map	17	327.6	UniSTS
RH 2.0 Map	17	253.3	RGD
Cytogenetic Map	17	p12	UniSTS

AU048359

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	29,125,175 - 29,125,458 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	29,816,084 - 29,816,366	NCBI	Rnor6.0
Rnor_5.0	17	31,711,570 - 31,711,852	UniSTS	Rnor5.0
RGSC_v3.4	17	35,433,828 - 35,434,110	UniSTS	RGSC3.4
Celera	17	28,725,954 - 28,726,236	UniSTS
Cytogenetic Map	17	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253840	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276580	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276582	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC117279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC140751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000048757 ⟹ ENSRNOP00000048651

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	28,983,248 - 29,204,313 (-)	Ensembl
Rnor_6.0 Ensembl	17	29,674,164 - 29,895,386 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096321 ⟹ ENSRNOP00000087116

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	28,983,248 - 29,180,591 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100703 ⟹ ENSRNOP00000095115

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	28,982,037 - 29,118,380 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102044 ⟹ ENSRNOP00000078746

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	28,982,037 - 29,118,797 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106207 ⟹ ENSRNOP00000078650

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	28,983,248 - 29,118,797 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119808 ⟹ ENSRNOP00000080331

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	28,983,248 - 29,070,498 (-)	Ensembl

RefSeq Acc Id:

NM_001014145 ⟹ NP_001014167

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	29,188,698 - 29,409,757 (-)	NCBI
mRatBN7.2	17	28,983,248 - 29,204,313 (-)	NCBI
Rnor_6.0	17	29,674,164 - 29,895,386 (-)	NCBI
Rnor_5.0	17	31,568,495 - 31,795,097 (-)	NCBI
RGSC_v3.4	17	35,290,255 - 35,517,646 (-)	RGD
Celera	17	28,583,965 - 28,798,437 (-)	RGD

Sequence:

show sequence

TGGAGGGTATCTTGCTTTGAGGTGGTTTAGCGTCCCACTTGTTCCTTGAGGACATCTGTTACTA
CCTAAGAGCACTCACCTGAAGGAGATGCTCAAAGGTCCAGAAGGGACACGTCTCGGGTGACAAA
GCAGGTGGCGATCAGAGAACAGAGACCCCTAAAGAATTTTATGGCATTCAAGGCAAAGCACAGC
CAGCCCGGAGGGAAAGCAAGAGTACAGCCTGGAAATACATAGCCCTGCCTGAAACGTATCTCTA
AAGAAAAACAATGGGCTTAGGCAGTAGCCAGCCTAGTACAAAGGAAGCCGAGCCCTGCACACTT
CAAGAGAAAGAGGAACATCCTGTTGATGACACCAGACAGCAAAATAATGCGGTTCCTGCAACAG
TCTCAGATCCCGATCAAGTGTCCCCTGCAGTTCAAGACGCGGAGACTCAGGTGGAAAGTATTGT
TGACAAAAGAAAGAACAAGAAAGGGAAGACAGAGTACCTGGTGCGATGGAAAGGCTATGACAGT
GAGGATGACACATGGGAGCCGGAGCAGCACCTGGTAAACTGTGAGGAATACATCCATGACTTCA
ACCGGCGCCACAACGAGAGGCAAAAGGAAGGTACCCTGGCTCGTGCCAACAGAGCCTCCCCCAG
CAACGCCCGGAAGCAGATCTCCAGGTCCACCCACAGCGCCCTCTCCAAGACCAACCCCAAAGCA
CTTGTGGTAGGCAAAGATCATGAGTCCAAAACCAACCAGCTGTTGGCTACCAGCCAGAAGTTCA
GGAAAAACACAGCTCCATCTCTTGCAAACCGCAAGAACATGGACCTCGCCAAGTCAGGGATCAA
AATTCTCGTGCCTAAGAGCCCCATTAAGGGCAGGACCTCGATTGACGGCTTCCACGGGGAGAGC
CCTGAGAAGCTGGATCAGGGTGCCGAGGACACTGTAACCCCAGAGGTGACTGCAGAGAAGCCCA
CTGGGGCTTTGCTGGGCCCTGGTGCAGAACGAGCCAGGATGGGGAGCAGGCCCCGAATACATTC
ACTAGTGCCTCAGGTTTCTGGCCCCGTGACTGCTGCCATGGCCACGACCTTAGCTGTTAATGGA
AAAGGTACATCTCCATTCATGGATGCGCTAACAGCCAACGGAACAGTCACCATACAAACATCTG
TAACAGGAGTGACAGCCGGGAAAAGGAAATTTATTGACGACAGAAGAGACCAACCTTTTGACAA
GCGGTTGCGTTTCAGTGTGAGGCAGACAGAGAGTGCCTACAGATACAGAGATATTGTCGTCAGG
AAGCAAGATGGCTTCACCCACATCTTGTTATCCACAAAATCATCAGAGAATAACTCACTAAACC
CAGAGGTGATGAAGGAAGTGCAGAGCGCCCTGAGCACAGCCGCGGCCGACGACAGCAAGCTGGT
GCTGCTCAGCGCTGTGGGCAGCGTCTTCTGTTGTGGTCTGGACTTTATTTATTTTATACGACGC
CTCACAGATGACCGAAAGAGAGAAAGCACTAAAATGGCAGAAGCTATCAGAAACTTCGTGAATA
CTTTCATTCAGTTTAAGAAGCCTATTATTGTAGCTGTTAATGGCCCAGCCATTGGACTAGGAGC
ATCCATATTGCCTCTTTGTGATGTGGTTTGGGCTAACGAAAAGGCTTGGTTTCAAACACCCTAT
ACCACCTTCGGACAGAGTCCAGATGGCTGCTCTACCGTTATGTTCCCCAAGATTATGGGAGGAG
CGTCTGCAAATGAGATGCTACTCAGTGGGAGGAAGTTGACGGCACAGGAGGCGTGCGGCAAGGG
CCTGGTCTCCCAGGTGTTTTGGCCAGGAACCTTCACGCAGGAAGTCATGGTTCGAATCAAGGAG
CTGGCCTCATGTAACCCAATTGTCCTGGAGGAATCCAAAGCCCTGGTGCGCTGCAATATGAAGA
TGGAGTTGGAGCAGGCCAATGAGAGAGAGTGTGACGCACTGAAGAAGATCTGGGGCTCGGCCCA
GGGCATGGACTCCATGTTAAAGTACTTACAGAGGAAAATCGATGAGTTCTGATTGGCAGGCTGA
GCAGGACACCAGCGACTCCCACTTGCTACGGTCGTTCTTAACAGTAGCTTGTGTTTGGAGGCAG
ACCTGGGAACATCCAGGCTATTTATTGCCGACGCGTTTTTAAGTACTGTAACTTTAAAATAACT
ACAAGGCAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006253839 ⟹ XP_006253901

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	29,188,697 - 29,324,097 (-)	NCBI
mRatBN7.2	17	28,982,009 - 29,118,730 (-)	NCBI
Rnor_6.0	17	29,672,925 - 29,809,655 (-)	NCBI
Rnor_5.0	17	31,568,495 - 31,795,097 (-)	NCBI

Sequence:

show sequence

CCCGGAACGGAGTCCGTGCTCCCCTTGGCCGCCCCGCCCCGCCGCCTCCCACCCCTCCCGCGAG
GGCGGCCCGAAAACCCGGAGCGCGGGAGCACTGCTCCGCCGGGTCGGGCGGCAGCACTGGGCAT
GCTCAGTAGCCGGGGCAGGTTTGTCGGTCGCAAGTAGGAAGCTTTTTGCACTACACCGGAGACC
GGGAGCCACGGATCCCGCCGCACAGCCCGCACCGCCGCCGCGCCCGCCCCAGCCCGTCCGTCCC
CTGGCGGGCGCGATGAACCCGCGCCTGAGCCTCAGCCGGCCCGCTGGGCACTGAGCGCGGGCGC
CCAGGGCGCGTTGCGCAGCTGCTCCTGCGCACAACCCCGCTGCCGCCGGCCCGCACCGGCCGCC
CGGAGCGAGAGGCTGGTCCGTGCACTGCGCCCGGCGCCGGCCGCGGAGCAGGAAGCGCAGGCCA
CGCAGGGACCCAACTGGAACAAAGTGTCTACCGCCGGGTGCCGCGCCCCGACCCCGCCGCGCCC
CTGCGCCGCCCACCATGGCCTCCGAGGAGCTGTACGAGGTGGAAAGTATTGTTGACAAAAGAAA
GAACAAGAAAGGGAAGACAGAGTACCTGGTGCGATGGAAAGGCTATGACAGTGAGGATGACACA
TGGGAGCCGGAGCAGCACCTGGTAAACTGTGAGGAATACATCCATGACTTCAACCGGCGCCACA
ACGAGAGGCAAAAGGAAGGTACCCTGGCTCGTGCCAACAGAGCCTCCCCCAGCAACGCCCGGAA
GCAGATCTCCAGGTCCACCCACAGCGCCCTCTCCAAGACCAACCCCAAAGCACTTGTGGTAGGC
AAAGATCATGAGTCCAAAACCAACCAGCTGTTGGCTACCAGCCAGAAGTTCAGGAAAAACACAG
CTCCATCTCTTGCAAACCGCAAGAACATGGACCTCGCCAAGTCAGGGATCAAAATTCTCGTGCC
TAAGAGCCCCATTAAGGGCAGGACCTCGATTGACGGCTTCCACGGGGAGAGCCCTGAGAAGCTG
GATCAGGGTGCCGAGGACACTGTAACCCCAGAGGTGACTGCAGAGAAGCCCACTGGGGCTTTGC
TGGGCCCTGGTGCAGAACGAGCCAGGATGGGGAGCAGGCCCCGAATACATTCACTAGTGCCTCA
GGTTTCTGGCCCCGTGACTGCTGCCATGGCCACGACCTTAGCTGTTAATGGAAAAGGTTCCCTT
TGTTCTTCAAAGGAGTCATGTGAAGTATCGTGTCCTTTCTCACTGCTGAGGCTGTTCTACAGTT
GTGTGTCACAAGGTACATCTCCATTCATGGATGCGCTAACAGCCAACGGAACAGTCACCATACA
AACATCTGTAACAGGAGTGACAGCCGGGAAAAGGAAATTTATTGACGACAGAAGAGACCAACCT
TTTGACAAGCGGTTGCGTTTCAGTGTGAGGCAGACAGAGAGTGCCTACAGATACAGAGATATTG
TCGTCAGGAAGCAAGATGGCTTCACCCACATCTTGTTATCCACAAAATCATCAGAGAATAACTC
ACTAAACCCAGAGGTGATGAAGGAAGTGCAGAGCGCCCTGAGCACAGCCGCGGCCGACGACAGC
AAGCTGGTGCTGCTCAGCGCTGTGGGCAGCGTCTTCTGTTGTGGTCTGGACTTTATTTATTTTA
TACGACGCCTCACAGATGACCGAAAGAGAGAAAGCACTAAAATGGCAGAAGCTATCAGAAACTT
CGTGAATACTTTCATTCAGTTTAAGAAGCCTATTATTGTAGCTGTTAATGGCCCAGCCATTGGA
CTAGGAGCATCCATATTGCCTCTTTGTGATGTGGTTTGGGCTAACGAAAAGGCTTGGTTTCAAA
CACCCTATACCACCTTCGGACAGAGTCCAGATGGCTGCTCTACCGTTATGTTCCCCAAGATTAT
GGGAGGAGCGTCTGCAAATGAGATGCTACTCAGTGGGAGGAAGTTGACGGCACAGGAGGCGTGC
GGCAAGGGCCTGGTCTCCCAGGTGTTTTGGCCAGGAACCTTCACGCAGGAAGTCATGGTTCGAA
TCAAGGAGCTGGCCTCATGTAACCCAATTGTCCTGGAGGAATCCAAAGCCCTGGTGCGCTGCAA
TATGAAGATGGAGTTGGAGCAGGCCAATGAGAGAGAGTGTGACGCACTGAAGAAGATCTGGGGC
TCGGCCCAGGGCATGGACTCCATGTTAAAGTACTTACAGAGGAAAATCGATGAGTTCTGATTGG
CAGGCTGAGCAGGACACCAGCGACTCCCACTTGCTACGGTCGTTCTTAACAGTAGCTTGTGTTT
GGAGGCAGACCTGGGAACATCCAGGCTATTTATTGCCGACGCGTTTTTAAGTACTGTAACTTTA
AAATAACTACAAGGCTTCTTTGTCTAAGCGTCTTTATTTTATACTCATGTATACACAAGTATAA
AAATGTAATTGAGCACTAGGCTGCTCCTGGAAGCTCTAATTTTCTTGTAAGCTAGTTGTGGATT
TTTTTTTGTTTTGTTTTGTTTTGTTTTTTTGTTTTTAAAAGGAATTATGTTTTCATTTGGGGTG
ACAGAAGAGTTTGGAATAATGTTTGTTTTACTCTTTTTTTTTTTTTAATCTAGATCATAGACCC
TAAAGAATACTAGCCATCATTGTCCCCTCCCTCTACTGAAACATGTAGAAATGTTTCAAACACG
TTCCTGCCTCTAGGGGGGAGGGGGAGGGGCAAGTACCTCAATGCTGGAAACAGTTCTGATCAAA
ATTAAGACCAATCTTGCAGGAAAAAGCATCACCGATGGAAAATCCCACAGGGTTGTGGGTTTGT
GCTGAGACGCCCACCGACTCGAACTTTCTTACGGTTCTTACCCAGCCACCAGGAAGAGCCTAGA
GTGTCTAGAGGAAAGCGGGTGGTCCAGTGTCTGTGAGTCACTCCACAACTAAGTTATGAATTAG
CGTTAGTGGTTTAAATGGTTTTTCTGGCCCTTTTGAAAAATAACTACATAAGTACTTCTTGTGG
CTGGGTGAGAAATACTACTTTGCATAGTTTTCTTTGTCTCTCTGCAGATGTGACTGATGTTATT
ACACCAAAAGTATTTTTTATGTTTATAAAGTGTAATTTTTAGGCTCACTTAGAATATATTTTAT
TTAATTTAAAATTCTCTTGGCACACTATTAAATACATAAACTCCTTTCAAAACAGAAAAGAACT
ACCTTATATTTGACATTTATTATCCACGGTCTCTGCTTCTATGTCTGCCGTATACTGCGCACGG
TTTCGTGTACACGAGTACCCCGTGGTATGGGGACTAACTACAGAGGCCTGTTACTACTAAGGCT
TCTAGGCTTGCAATCATTGAATGTATGAAGACTGAAATAAAATCAAAACCTTATTTTTGTACAG
TTTTGAAGTTTATACTCAGAACTGACGCCTCCCCGGCCACGTGGAGCGCTGTGCAGTGTGTAAA
TCTGTCTTTACCTTGGATGGATTGGTACAGTATTTTTGCATCTGTGGGACCTACTCTTTTGTTC
AGTAGTTTGAACTATATATAAACTGTACACTCTGTAAAGTTTTTATAGAATAAATATTCAGCTG
TGAAAACTGGTTAAATAAAACTAATATTTCTTAACACA

hide sequence

RefSeq Acc Id:

XM_006253840 ⟹ XP_006253902

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	29,188,697 - 29,252,510 (-)	NCBI
mRatBN7.2	17	28,982,009 - 29,047,061 (-)	NCBI
Rnor_6.0	17	29,672,925 - 29,749,358 (-)	NCBI
Rnor_5.0	17	31,568,495 - 31,795,097 (-)	NCBI

Sequence:

show sequence

CACACACACACACACACACACTCCACTAAATCACTAAATTCTATCATGGACTGAATTTGAGTTT
GTCTCTGTGCTGTTGCACAGAAAGTGTCCTACAGAGCTGGGCCTGCTGGTGTATACTCAGTACT
CCCCACGCTTGGGAGGTAGAGCTTCAGGAATTCGAGGCGAGCCTTGACTGCATAGCAACTTTGA
GGCTTGCATGAGTTACTTGAGACCCCCGTCCCAATCTGTCCTGACAGGGTAAAACTTGTCCTTC
ATCCAGCTTTTACAGGGAATTGCCCTACATTTGATGCTTCACCCCAAACTCCGTCCTCGTTTAG
GAGAGAGCGCCCTCTGCTGAAGGAGCCTGATTGAGAGGTGCAGTTCTGCCATCCAGTCCAATTT
CTCACCTCACAGGTTGTCTCTCGCCACTTTTCCTTCTGCACTGCACAATGCACAAGCTCCAGTC
TCTTCCTCGTATTACCCGCCCTTCAAGTCCGGTTTATTTCTTAAGATGAGGGTTCAGCACAGAA
GCCTCATTTACTTACTTTCTCTTGAGTATGTTTCTTGTCTAAGGCTCTTACTTCCCATCCTCCC
TCCCCCAAGTAAAAACAGCTCTGTATTTAAGAAACACATTGTACCTGGTGAGTCAGGCTGTAAT
ATGAAATCCATGGAGGATGTGGCAAATCCTGCGAGGTGTTAGCAGAGCTGAGCCCATTCCTTCC
ATTGATGATTCCTTCACGTGCAGCCATATTGCGTGCCAAGCTCCTGACTGTGCCGTAAGCACAT
CTGGTCCCCAAGCATTTTAGCCAAGGATAGTCCCCTTGCACCTGTGTTGCCTGGTTATACAGTT
GCGCAGCCCAGAATCATGGAGCCCTGTCAGAGCTGGGCAGATATGAACTCAGACAATGCCTAGC
CCACCTGCTCCCCAAGCTTACCGTGTATTTTCCTTATGACCCTCCTTTGGCTTAGGTTTTCCAG
TTCACGCATATGCCATAGTTTTTCATACCTTCGTATGTATTATAATTGAGGGCTGCCAGAATAC
GGAATAGTGGGCTTTTAAATCAGACTCCTGAGGTTCAAATCCTGGCCCTTCTCATGGCTGCTCC
TCTAACAAACACCTTGTTTCCGACTTCCTCCTCAGTGGAAAGGGAGAGACAGATTAAGATCTGT
CACCTAGGGTTTTGGAGGAATTAAATGAGTTAATACATAAAGAACTCAAGCCAGCGATTGCCAC
ATAAGCTCTTGGAAATGTTAATTAGCTGCGTCAAATGTCAGGCACCCGCTATGCCCCTTGTTCG
TTTTGGGCCTGCTTGTGACTGATTCGTTTTGTGCTGGAATCAGACTTGTGAACATTTTTCACTG
AATTGTTTTTGTTCACTGTATGGCTTTTCTGTTGGTTTGAAGCTGGCCATTCTGGGAGGCTTTC
TGGAGCAGCTTCTATCCCTGCAACAGGCAAGGATTCTAATTCAAGGGGAGTTCCTGTCTGGGCT
GTGTGCGTCTCCTTGATCCTTTTTCCTAGTACTGGTTACTACACACAATTCCTACTGGCTTTAG
CACCTCACCCGCGCCTGGGTACATTGCACCTTTGAGCTGGTCACCCTTGCTTTACAGATGGGGA
AACGGCAGTTTTCCTCCAGCAGACCCAGGGGATGATCTGTGGGATGTTACTACACATTTTCAAG
TCTTGGTCAAAGGAGGCCACATTTCCATAAAAGGACATCATTATCATGGGCTTTGGCATTAGAT
AATCATGTTTAATTACAAATTATATTTATGGGACACTTCAGGCAGTCTCAAGTGTTCAGTGAGT
TGAGCACCTGTGTGTGCTGCACCCCATATAGTTGGACTGAAGGTTTGACGTTTGTGGACACACT
GTCACAAGATCAAGCTTATGCTCTCAACTGTTTCGACTTCTGGTGATTTGGGCATTGGGCATTG
CATCCCACACCTGTACACTTAAAGCTATCACTGTTGCTTTCTAGCCATGCCCCCTCACTCCATC
CACCCACCAGCCCTGTCTTGGAGTTTCCTTGTTAGTGACTGTGGTGGTGTGACAAAGGAACTAA
CATTTGGGTGGTAACTCCCACTAGGGGCTTAGTATCAGTAAGAACAATGTGGAAATTGGTATTT
ATTAATTAGAGACCATTTATGTCACTCATGAAGAAGGCTTAGGCATGCGTAGCACAGTCAAAAT
GTCAGTGAAGAGTGTAGTACTAGAAAAAAAATGTGCCTTTTCTAGTTTATGGTTCACTTGGTGA
CACCTAGAAAGTAGACACTCTAGGATAGCCACTTGGGCCTGGAAGACAACACGGAGCCAGCCGC
CTATAGTGAGTGGGCTGTGGACAGAGCTGTCATCATGTAAATGCAGGCTGGAGGAGCTGCTGCC
CCAGCCTGTGCCAGATTTGAGCTATGCTTCTGTCAGATCTTGTGAGCAGCCTTTCCATGGAGGT
AAGGAGGACAGAACTTGATAATGACAGTGATCACCTCTTAGAAGCATAGCATGAGTCAGGCATG
GCGGCAGAGATCTGTGTGACCGTTGCACTTGGGAAGCTGAGGCCAGAGAATGGAGAGTTTCCAA
GCCAGTCTGGGCGTCTTAGGAAATTGCTACCCCACCTTCCCTGAATGCATCCCAGAATGCCTGA
GACTCTGTTCCACATTAAATTGGTCACCAAGTCATCGGTGTGAAGGTGTGTTGCCTGTATGAGG
TTGCTCTTTAGAGGAATGAACTGGAGATTGGCTTATTGGTGCCCTCGCCGTAACCCATACCTTT
AATGAAGCTGGGTTCAAACTGATTTGGTTTTGTGCCATTTTATTCTGTATACCTAGAACACCTG
GGTTACAAGGGTTTGATTCTGGCCAGGTTGTAAGATCCATGGGCAAAGCCCTTAGAAATCATGT
TCTAACACATGTACATGCATAACCCTGGTCATGACTTTGAAGAGATTCCTAACTCCACTCTAGA
ATCCAGAAACAAGATAGTTATCAAGAGTATTAATTCCCTCTTCTTGACTTGCTGTGGATGCCAC
AAGCTGTGTGGACACACAAAACTCTCCAGGATGCAAACCAAGAGGTCCTCAGCCTGGCGTGACC
CTGAAGGTCTAAGCTCTGAGAGACGTGTCAGTTCTGCTGTTTTGTTTTTGTCAAGTAGGTAGGA
TGAGCTCACTCTCTGATTTGAGACTATTAAATGTGCTTCAATGAACGAGATTCCAGCTGGTAAC
AACTGACTCTACCAACTTTTATTTTTATAAAAGGAATTCACCCTTGCCCGGACATAGAACCGTT
ACTATTATATGAAACAGTATTATTTACAACTACCCTGTCAAATAATTCATTATTTTAACACATG
ATCTAACAAGGTAACAAATGCCTCACGCTTCTAACTTTGGGGCAACTTGTTTAAATACATATAA
AAGCCTGTTGTACATAACAGTGTGAGTTAAGTCTGTATTGTTTCTAGATAAAATATCAGGATAG
CTCTTTGATTTGTTCATCTTTAGCTTGTCACTCCAGAGCCATTTCCTCATGAATAGCTAGAGAG
ATGGTCTCATTGGCGTTGCCTTCTTCTGGAGCCTGTCAGCTCCTCCCTGGCTAAGTCAAGCAAG
GCATGTCTGCATGTTGCAACATCTGCCCTGTTTCCTGGTTAACATAGAAAGGCAGTGCCTGATT
TTCTTGTTCTTTGGAGCAAAGATGAGGTTATTTCATGGTCAAGAAGAGAGGCTTATGGTCCTCA
CCAGCTAACCAGAAGGCTTCCTTGTCATGTGTAGTTAGCCTCACTTGACTAAGGTGGCTGGACT
CTGACAAACAGGGTTCCTATGGCAAAATGGCTCTTCCCAGGAGGGTGAGTGATGGGAAGTTTCT
CCAAGGAAGCCATTGTTTTCCACAAACATATCAAAAGGAATTTAAAAAAAACTAAGCCACATTT
CATAGATAATGTATTGATGTGTAAAACTCTGGGCTGACACTGGCTGTCCTTACTGCTCACCCTT
GTCTCTTGTGGGATCTGAGACCATTTGCTAAGACATAAGAAGACAGAGCTGCCTTGTGTATTTC
TGAAGAAAGGAGACAGTACATAGTAAAAAAAGGTTTGGAAATAATGGTGGCTGAGAAGATGCCA
TTGTAGGTTTTTAAAAATACAAATATTTTCAAAATGAAGTATACTAAAACCTACACCAACTTGA
TCTGGACCCAGGCTCTTGCCACAGAGCACAGAAGATCAAAGCTGAGCTCGAGTTTGACAGCACT
GGAGAAGGAGGGTCTCCTGAGAAGGACCCAGTGGCACCCAGTGCAGGTCTCAGCAGCAATTGGG
AGCAAGAAGCAGGGAAAATAGCTATCCTCTGGACCCCTTCATACAAGCGCTGGGAACCTTTGCC
ACTGGTAAAGATATCAAAAGATATTTTGGAGGAAAAAGAAAAAGAAGAAAGCAGAGCCAGAAAG
CTGAGAGAAAGGATGAGTAATCCGTGGAAGAAGAAGCAGGAATGTTTGAACATTCTCAGCTACA
TGGAGCAGCCAACTTTCATGGCCATGAATCTGGGGAAAGTAAAATCAAGTGACAGTTTTGTAAC
ATCAGGAAGACTCACAAGAATGTTATTTCCTTCTCTGTTATTCTGATAGGGGAAAATATGTTTA
GATATAATTAGCAGACAAGCATTTTCTTTGTTACTTTTCTGTTTCTGTTTACAAATATCCTCAC
AAAAGCAACTGGATGATGAAGGGTTTGTTGCGTCTCACTCAGTCTCAGGATGCAGTCCATCCTG
GCAGGGATGTCAAGGCCATGGGAGCTAGAAGCAGCTATTCACACTGCATTCATAATCAAGAAGC
AAAGAGCAGTGAATGCTTTGTGCTCATTTCACCTTAGGATCATAGCCCAGGGAATGGTGTCACC
CACGGTGGGCACAAATTAAGTCATGGGCATACCCAAAGGCCCCCTTCCCAAGATGATTCTCAGT
CTGACCAGCTTGACAGTTGAGATTAACTGTCACTCAGCTGTCACAAGCATATTAGATGGTTTAA
GAATAGCCACTCAAAAGCATTCAACTTATGAAAAGGGAAAAAGAAATATATAAAACAAGAATAA
ATAGAATGAAATCATCAAAATAGATTCAGGTAAGTTAATCACAATAATTAAGTGATGGACTCAC
AGAGAAACACTTAAATGTTCTTAAGTGCTGAAACTAAAATTATGTGGCACCACGCTTGACAAAT
GCATTTTTAATTAATCCTTGTACCAAGCCACAAAGCAGCAAACACCAAGAACACTAGAATTCAT
GCTATGTTCTCTGATTGTAAGTTCCTAGATTAGAAACTGAATGTTTCTAATTTTGGAAATTTAA
ACTCATTATTATCTTGTGAGCCATTGAGGAAATCAAAGGGAAGTAAGAAAACACCTAAAACTGA
ATCATTGTTAGCATTGTGTTTGAATTACAGATTACAGGAAGAACATCAAGAAAGTCAACAGAAA
AAAAAATAATAGAAAATGAAAGCATGGATTCCCCTGAGGGTCCAGATCTAAAACTTGGCCCTTT
AAAAAGAAGGACAAGAGGATCGAACTAAACATTGGGAATGAAGGCGCCTTATCAAGGCGGACAT
CACAATGCATGTAATATCAGGGATCGCCCAGATTGGTTCAAGATGAAGGGGCACATTAAGGACA
TGGATCCAGTTCATGGACAAGACCCCCACACTTGCACACCAACATTCCAGACCCACAGAGCTCA
CTGATATCTCCTCCCCATTCAGAAGAGTGGGTCACCCTAATTCCTCCTTCACTTTGTTTTATCT
TCCGTTTTCAAACCAGCACAAAATCTCTACCACAAAAGAAAGGGCTCCTTAAACCCATGATGTC
CCGCCATGCTAACAGTTGCACGCTTCGCCATTTGTAGTTCATCCGTGATCTCACAGCTTTTCTT
GGTAGGTTAATTTATTGTTTTGTTTTGGATGTGTTTTAAAGCAAAATCTGTTCTTCAGATGGTT
CTTAGCTTACAGTAGAGCTGCTATGTTTTGGTTAACCTCTTGTAATTTGAAAATACCCTAAAGT
CAAAAGCAGCTACCACCCTGGGTACCACCCACCAAGCTCTTCAAAAGTGTGGCAGAGAACCAGA
TGTTTACCTTCCTGCTTGCTTCCTCCAATCACCTTGCTAGCTGGAAGCTTGGCTCGCCACCACA
CAAAACAGGATCTGTTGACAGCAGCTGAAGGTGGGTTACACAGACCTGACACATTTAGGGAAGA
GAGAACAGGAAGGGAGACTCAGGGTTACAGAGAGGGAGGGAGTGGCAGTGGAGAACCAAAAGAG
TAGCATCCCCAAAAGCAAGTGGCTTCAAGAAGGGATGATTAAAAATACCAGGCCACGTTAGAGC
TGTGAGGCTTCAGGTGTGTAGAGGAGTGAGTTGGTAAATCCTTTGTACTGGGTTTTGGAGGAGA
ATATGAAACTTGACAAAATTACCAAAAACAATTTCAGGGCTCTGTGTATATAGTTGGGCACACA
GTGATAGATGTAAAGAACGTGTATTCGTAAAAACTATACTTGGGGAAGCACGGTGGAAATGGGC
AGAAATTGACTGGAAGAACACAGAGAGGTGTTTGCCAGTGAGCACACAGAGCTGACCTTTGAGC
TTTGTAGCGGCGTCAGGATAGGAGTCCGCCTTGTGGTGCTGATGCTAGCGGATGCTTTCCGTTT
CGTCAATGCACTCAGTCACTGCCTCCTAAGCAGCCTTAGTGAACGCACGCGTCCACTTGCCGTT
CGAATTGTGTTTTGTGGACTGTAGAACAGCCTTGTTACATTTCACACAGGGGTGAGTTTTATTC
CTCTGATAGATGTGCTCTGTTAGCAGAAGACTGGGCTTTTAACAGCAAACTACCAGCTTATAAT
TGAGAACATTTTTAATTAAACCCAGTGGGTGACATAGATGTACAAATGTCTCTTCTGTGAAGAG
CCTGTCTTGTGCCTGATATCTTCTGTGCTCGGTTTAGTTTTGGCGTGCTTTGGGATTTGTATTA
TATTCTTTGCTCTTCTTTCTGCTGTAAAAAACGTGGCTAAAACAACTAAGAAGAGGAGATTTAC
TGGGGCTCGTGGTTTAAGAGAACACAGTCACCACGATAGGGACTCTAAGAGTCAGGAGTTGCAT
TACTGTTGCACGGGAGGGAGCACAGTCAGTGTGACGAGGGTGGGGCTGGGAGCTACTTTTGTGG
CCAAGGAAGCCTGCTCACAGCTCAAGTTCATGAAGGAGGTGATTAGTATAAGCCTCCAAGTCCA
CTCCGCAGCACCGGCCTCTTCAGCTGAGCCCTTCTGTAGGGCCCCAGACCACTTCCACCAGCTG
GTTCAAACCCATGAGCCTGCCCAAGACTTTTATACACAAGTCTTTGCAAGACTGAGTGTTTTGT
TCATGGAACAGGAGGTTTAAAAGTGAATATTGTGGCAAAAGTTTAACATTGTAAGGTAAATGCA
GACAAACTATAGTTTTTTTTTTTAACTTTTCTGTGATGTTATGAAAATAGAACTAGGCAGAAAA
TTCCGAGCCTCAGCATTTCTAGTTATCTATTTTTCGCCCCTCCACAGTTCTGTCTTTGTCACTA
TCCGTTTAATAAGGCCAGGCTGTACAGCATAGTACCAGTCATTCAGATGCTCAACAGAAATGTC
TTTCTATGACTTCCTAAGCTTTCCATTTAGCATGTTTGGTGTGTGGGGCCCGAGAGAAATAGCT
AATGCTTTCTTCTGTTCTGAGGCAACCCACGAGGGATCTAGTCGTGAAGGGAGCCCATAGTTGT
GTTTGCCCTTGTGGCATTGTGTGAGGTTGTTCCGAGTCACCCTGTGTATACAGTACACACATGC
AGACTATTCAGTTTGTAATCTGTCGAATGTACAAGCAGTAAATACATTTATTTGTGCCAGATGC
CATTCTGCATGCATATGGGGGGGGAGGGAGAGAGAGAGAAAGAGACAGACGAGCCTGGGAATGT
GTCTTATTGGGCTGTCTTTTTTTCAACAGTATTTCCCTTACTATTTTTAATTATTTTGATTTGG
GTAAACCTCTTAAGAAAAAAGTGAATCAGGCTGGCAAGACAGCTCGGTAGATAAACTCATTTGC
TGCCACGTCTGGCAGCTTCGGTTTGATTGATTCCAAAATGGGTGGGTAATATAACAAGTGTCAG
AACTTTCAGCGAGGAAGATCCACTGAATCTTATTCATAGAAAGCTTTCAGTCTCCCTGAGGAGG
GGAGAATTTCAGTATCCAGAGTGGCCTCGTGCCCGCTGGCGTATGTTCTGTCATCTTGCTGCTG
TGCATGTAGTGCCCACACGATGGAGAAGTAGATCACGACATCACTGTGATGTGCAGTAGTCGGT
GGACGGAAATCCACATACACTATAACCTAAGCAGAGCCTTCCTCCTTTGCCTTTGTTCCGAAAG
TCAGCTTAATACATAGCACTTTAGAAAACACTTGAACTGTAGCCTTACTTCTGCCAACCTGCTT
TAAGAATAAACCGGGTGAGTGGAATAATACAGAGCCCTGTTACTGAAGGTGGTAACAAGAGTGT
GCTGTGCTGTGCTTTAAGAGCTTGGCTCAAGATGGTTGAATGGGCACGCTCAGGGGATGCAGCC
AAATGTAGCACAGCCATGGAGGAGTCCTCACCTGCCCACTCGCTCTCCTGCTCTCCTGCCTGTC
TGAGCGTGAGCACGTGTGGGTGTCTCCAGTTCCTTCCTTGGAACTTCCAGTTCCCGGTAGACTG
CTTTAAAAACCTCCCGTGCTCACTGTAAGGTTGCGGAGCTCTGTCAAATCCATGCTCGACCTCC
AAAGACCTTCCTCACTGCCGGGTAAGCCTCCAAAGACCTTCCTCACTGCCGGGTAAGCCCTACA
CTTGGGTAAGATAAAATGATATTTGTGTTTACTGGTGCTTTGTTTTATGAGTGACTTAGAATTT
GTCCCACCCACAGTTTGTAGTGCTAGCCGTACTGATTTAGAAGAGAAAATTATAGAGTATCAAT
TTTCTTCTTATGCACAGCATCTCTGTCTGACTTGGCAGTGGCTCTGTTTCGTGCACGTGCACTC
GTGTTCAGTGTTGGCATTAGAAATGGCTGTGTGCTTCACCACCACTTAGTCCTTGGGAACTATT
ATGCTGGGCTGCTCATAGGAAGCTCTGTTGTGTAGCTGGGGGCTGCTGCTCACCCACCACATTT
TTAGATACTGTTGGCCAGAGACTCTTCTCATGCCAAGAACCGTTTAGATGGTCTTCTGTTGTCT
AGGCTGTGAGAGGTACAGTAGAAGATGCATAGATCTTGAGTGACTACTGCCTTCGAGACACCAG
GACCGTTGTCATCCATGAGATTCTCTCGTTTCCCTTTCCTTGCCTCCGCCACACACAAACTCAG
TGTCTTTGTTCATACCACTTCTGCCATGTAGCATTTCACTGCCTAACTACAAGGTCACCTGAGT
CGGTAGCACTCTTTTGCTCTAACAAACACGCAAGATAAATCAATTTACAAAAGGTTTATTCGGG
CTAAGGGTTTCAGAAATCTCAGCCTGTGGTTGCTTGGCTCTGTTGCCTTTGGGGAGGCGGCCAG
CAGAGTGCACACCATGGTAGGAGCGGGGAGTGAAGGAAGCCACTTATCTCACCACATCCTGAGA
GCAGAGGCACACACGGGCTGGAGTTGCCAGTGTCCCCTTCAAGTGTCACTCTCAATTACTTAAC
TTCTTCCTACCAGCTACAATTCTCACCTTGTATCCTTGCTGCCACCTTGCACTTAGGAGACCAA
GCCTGTAGAACATGTTAAACAACACAGTTCTTAGGCCAAAAACGACTTTCGACTATAGGAGACA
CTGTTGAGGACAGTGAAACCTGGAGCAGCATGTACTTGGGTCTTAGAGAGATGCTGACTAGGGA
GGAGCATCTACTAGGAGGGGTCTTTACAAATAGCTTTATAAAGGCAGAACTTTGTCTCATTTGT
ATCAGGGTCCTGCTCCCCACCCCCTCTTTCATATATTGAAACACAACCCCTCTTGGGCCACTGT
TGCAATAATGTTAGCCATTTTATAAAAGGCTCCAGAGTTCACTGGAACCTTCTGTGTGGGATCA
CACAGACGTTGCATTCTGAGGGGATTGGTCACCATTGGGCACTCCAGTCTGCTGGTACCTTGAC
TGTGAACAGTGAAGTTGTGTCATTCATAAATAACGTAAGCAGCCCAACAGACAGACACTGTTGG
TGCTGAGCCTGCAGTGCTCTGCGTCTGTGCCATCCCATCCCCCACCTACCTACGCACCCTGTGG
CTTGGGGAGATTTTGATGAAGTCTTGTTTTCTTGCTTTCATGACTATGCTTTTTTGTGACTCTA
GGGACTTTTTTTTGTCTCCTCCCAAACCATAAGGATGGTGTCTTCATGTTTGGTCTAAAAGTTT
CATGGCTTTAGATTTTATTCCTGGCTTATAATGTGTTTTGAATTAACATGATAATGAGGATTGT
GGTTCCATTTTATTTCACTTTTTAGCAAATGGATGTCCAGGATTCTAGTACCTTTTTATTTTGT
GGTGACGGGTCTCCTGCAGCACAGGCTGGCATTGAGGGACAAAGTATGCAATAAAAAAAAGTAT
GTTTGACTCTTGCCTCTTTCTCCTGGGTTTTGTTTACATGGTGGCTGACAGTCAAATCCTCGTG
TATGCACTTGCAAGCGCTCTGCCAACTAGGCTTTCCTCCCAGGTCTCCCACGACCGTTTACCAA
GAGAACTTGATCAAGTGGGCTACGGACGCTTTTATAATAAGCAGAGTCAGTGTGTGGCTGCACA
GATGGGCGTCTTTCTAGATAATTCCCTTAGGTTTCGCTCACTGAGGCTGATGTCCCCATAGTCC
TTTAGAAGGATAACTGTTAGGACTCTGCTTACCTATCTGCTTGTTATCCCTGTCTCGTTCCCCC
AAATCTCCCAGGTCTTGTGACCCTCTAACCTGGTCTTCCCCCATTGGAGTAGCCACTTTGTAAT
AAATGACTCAAATGGAACAAATGTAGGGAAGCCCCAAGGGCTCATTGGAAATACCAAACTGAAG
AGCTGGGTGGCTGACCCTCAGAGTGCCGTCTTCTTCACCTAAGCAGAGCTGCTGGTCTGTCTGT
TGCTCCCACTCCAAGGGTAGGGCCTTTACACTCAATCTACAGAGTTCTCCACAGTGCCCTGACC
TGAGGTACTGATGGCTCAGGTAAGCTACAAACTGCGATGTGCCCTAGCTGCTTCTCTGCAGCTT
CATGGGCAGCAAATGCAAGCAGAACCAACATTCCTGGCCTTGGGTTGACGGCCAGAGTCCTCAC
AGTTCTCTTCTGTGACTTTTGGTGCGAGCACACCCACTCCTAGTCTCTACAGTTGTCTAGCTTT
TTTTCTGTTGCTTAGAAAACCACTAAAATCACTAAAACCCTTCTTTCAGCCTGCAGAATTGTTG
GAGTCACACATGGTTGTCCCCAGGACCAAGCTGCTCTGGGCCTCAGAAAAGACTGACAGAGCAA
AGGTGTGGTCCACTCCTTTCCCCCACTACACAGAGCTGACTCAGCTACACCAGAGGAAGGATGC
TGCCTCCTAGCTCTCAGGTGGAAAGTATTGTTGACAAAAGAAAGAACAAGAAAGGGAAGACAGA
GTACCTGGTGCGATGGAAAGGCTATGACAGTGAGGATGACACATGGGAGCCGGAGCAGCACCTG
GTAAACTGTGAGGAATACATCCATGACTTCAACCGGCGCCACAACGAGAGGCAAAAGGAAGGTA
CCCTGGCTCGTGCCAACAGAGCCTCCCCCAGCAACGCCCGGAAGCAGATCTCCAGGTCCACCCA
CAGCGCCCTCTCCAAGACCAACCCCAAAGCACTTGTGGTAGGCAAAGATCATGAGTCCAAAACC
AACCAGCTGTTGGCTACCAGCCAGAAGTTCAGGAAAAACACAGCTCCATCTCTTGCAAACCGCA
AGAACATGGACCTCGCCAAGTCAGGGATCAAAATTCTCGTGCCTAAGAGCCCCATTAAGGGCAG
GACCTCGATTGACGGCTTCCACGGGGAGAGCCCTGAGAAGCTGGATCAGGGTGCCGAGGACACT
GTAACCCCAGAGGTGACTGCAGAGAAGCCCACTGGGGCTTTGCTGGGCCCTGGTGCAGAACGAG
CCAGGATGGGGAGCAGGCCCCGAATACATTCACTAGTGCCTCAGGTTTCTGGCCCCGTGACTGC
TGCCATGGCCACGACCTTAGCTGTTAATGGAAAAGGTTCCCTTTGTTCTTCAAAGGAGTCATGT
GAAGTATCGTGTCCTTTCTCACTGCTGAGGCTGTTCTACAGTTGTGTGTCACAAGGTACATCTC
CATTCATGGATGCGCTAACAGCCAACGGAACAGTCACCATACAAACATCTGTAACAGGAGTGAC
AGCCGGGAAAAGGAAATTTATTGACGACAGAAGAGACCAACCTTTTGACAAGCGGTTGCGTTTC
AGTGTGAGGCAGACAGAGAGTGCCTACAGATACAGAGATATTGTCGTCAGGAAGCAAGATGGCT
TCACCCACATCTTGTTATCCACAAAATCATCAGAGAATAACTCACTAAACCCAGAGGTGATGAA
GGAAGTGCAGAGCGCCCTGAGCACAGCCGCGGCCGACGACAGCAAGCTGGTGCTGCTCAGCGCT
GTGGGCAGCGTCTTCTGTTGTGGTCTGGACTTTATTTATTTTATACGACGCCTCACAGATGACC
GAAAGAGAGAAAGCACTAAAATGGCAGAAGCTATCAGAAACTTCGTGAATACTTTCATTCAGTT
TAAGAAGCCTATTATTGTAGCTGTTAATGGCCCAGCCATTGGACTAGGAGCATCCATATTGCCT
CTTTGTGATGTGGTTTGGGCTAACGAAAAGGCTTGGTTTCAAACACCCTATACCACCTTCGGAC
AGAGTCCAGATGGCTGCTCTACCGTTATGTTCCCCAAGATTATGGGAGGAGCGTCTGCAAATGA
GATGCTACTCAGTGGGAGGAAGTTGACGGCACAGGAGGCGTGCGGCAAGGGCCTGGTCTCCCAG
GTGTTTTGGCCAGGAACCTTCACGCAGGAAGTCATGGTTCGAATCAAGGAGCTGGCCTCATGTA
ACCCAATTGTCCTGGAGGAATCCAAAGCCCTGGTGCGCTGCAATATGAAGATGGAGTTGGAGCA
GGCCAATGAGAGAGAGTGTGACGCACTGAAGAAGATCTGGGGCTCGGCCCAGGGCATGGACTCC
ATGTTAAAGTACTTACAGAGGAAAATCGATGAGTTCTGATTGGCAGGCTGAGCAGGACACCAGC
GACTCCCACTTGCTACGGTCGTTCTTAACAGTAGCTTGTGTTTGGAGGCAGACCTGGGAACATC
CAGGCTATTTATTGCCGACGCGTTTTTAAGTACTGTAACTTTAAAATAACTACAAGGCTTCTTT
GTCTAAGCGTCTTTATTTTATACTCATGTATACACAAGTATAAAAATGTAATTGAGCACTAGGC
TGCTCCTGGAAGCTCTAATTTTCTTGTAAGCTAGTTGTGGATTTTTTTTTGTTTTGTTTTGTTT
TGTTTTTTTGTTTTTAAAAGGAATTATGTTTTCATTTGGGGTGACAGAAGAGTTTGGAATAATG
TTTGTTTTACTCTTTTTTTTTTTTTAATCTAGATCATAGACCCTAAAGAATACTAGCCATCATT
GTCCCCTCCCTCTACTGAAACATGTAGAAATGTTTCAAACACGTTCCTGCCTCTAGGGGGGAGG
GGGAGGGGCAAGTACCTCAATGCTGGAAACAGTTCTGATCAAAATTAAGACCAATCTTGCAGGA
AAAAGCATCACCGATGGAAAATCCCACAGGGTTGTGGGTTTGTGCTGAGACGCCCACCGACTCG
AACTTTCTTACGGTTCTTACCCAGCCACCAGGAAGAGCCTAGAGTGTCTAGAGGAAAGCGGGTG
GTCCAGTGTCTGTGAGTCACTCCACAACTAAGTTATGAATTAGCGTTAGTGGTTTAAATGGTTT
TTCTGGCCCTTTTGAAAAATAACTACATAAGTACTTCTTGTGGCTGGGTGAGAAATACTACTTT
GCATAGTTTTCTTTGTCTCTCTGCAGATGTGACTGATGTTATTACACCAAAAGTATTTTTTATG
TTTATAAAGTGTAATTTTTAGGCTCACTTAGAATATATTTTATTTAATTTAAAATTCTCTTGGC
ACACTATTAAATACATAAACTCCTTTCAAAACAGAAAAGAACTACCTTATATTTGACATTTATT
ATCCACGGTCTCTGCTTCTATGTCTGCCGTATACTGCGCACGGTTTCGTGTACACGAGTACCCC
GTGGTATGGGGACTAACTACAGAGGCCTGTTACTACTAAGGCTTCTAGGCTTGCAATCATTGAA
TGTATGAAGACTGAAATAAAATCAAAACCTTATTTTTGTACAGTTTTGAAGTTTATACTCAGAA
CTGACGCCTCCCCGGCCACGTGGAGCGCTGTGCAGTGTGTAAATCTGTCTTTACCTTGGATGGA
TTGGTACAGTATTTTTGCATCTGTGGGACCTACTCTTTTGTTCAGTAGTTTGAACTATATATAA
ACTGTACACTCTGTAAAGTTTTTATAGAATAAATATTCAGCTGTGAAAACTGGTTAAATAAAAC
TAATATTTCTTAACACA

hide sequence

RefSeq Acc Id:

XM_017600600 ⟹ XP_017456089

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	29,188,697 - 29,409,805 (-)	NCBI
mRatBN7.2	17	28,982,009 - 29,204,343 (-)	NCBI
Rnor_6.0	17	29,672,925 - 29,895,416 (-)	NCBI

Sequence:

show sequence

AGCCAGGGCAGAGACAGTTTCCAGGCATGATGGAGGGTATCTTGCTTTGAGGTGGTTTAGCGTC
CCACTTGTTCCTTGAGGACATCTGTTACTACCTAAGAGCACTCACCTGAAGGAGATGCTCAAAG
GTCCAGAAGGGACACGTCTCGGGTGACAAAGCAGGTGGCGATCAGAGAACAGAGACCCCTAAAG
AATTTTATGGCATTCAAGGCAAAGCACAGCCAGCCCGGAGGGAAAGCAAGAGTACAGCCTGGAA
ATACATAGCCCTGCCTGAAACGTATCTCTAAAGAAAAACAATGGGCTTAGGCAGTAGCCAGCCT
AGTACAAAGGAAGCCGAGCCCTGCACACTTCAAGAGAAAGAGGAACATCCTGTTGATGACACCA
GACAGCAAAATAATGCGGTTCCTGCAACAGTCTCAGATCCCGATCAAGTGTCCCCTGCAGTTCA
AGACGCGGAGACTCAGGTGGAAAGTATTGTTGACAAAAGAAAGAACAAGAAAGGGAAGACAGAG
TACCTGGTGCGATGGAAAGGCTATGACAGTGAGGATGACACATGGGAGCCGGAGCAGCACCTGG
TAAACTGTGAGGAATACATCCATGACTTCAACCGGCGCCACAACGAGAGGCAAAAGGAAGGTAC
CCTGGCTCGTGCCAACAGAGCCTCCCCCAGCAACGCCCGGAAGCAGATCTCCAGGTCCACCCAC
AGCGCCCTCTCCAAGACCAACCCCAAAGCACTTGTGGTAGGCAAAGATCATGAGTCCAAAACCA
ACCAGCTGTTGGCTACCAGCCAGAAGTTCAGGAAAAACACAGCTCCATCTCTTGCAAACCGCAA
GAACATGGACCTCGCCAAGTCAGGGATCAAAATTCTCGTGCCTAAGAGCCCCATTAAGGGCAGG
ACCTCGATTGACGGCTTCCACGGGGAGAGCCCTGAGAAGCTGGATCAGGGTGCCGAGGACACTG
TAACCCCAGAGGTGACTGCAGAGAAGCCCACTGGGGCTTTGCTGGGCCCTGGTGCAGAACGAGC
CAGGATGGGGAGCAGGCCCCGAATACATTCACTAGTGCCTCAGGTTTCTGGCCCCGTGACTGCT
GCCATGGCCACGACCTTAGCTGTTAATGGAAAAGGTTCCCTTTGTTCTTCAAAGGAGTCATGTG
AAGTATCGTGTCCTTTCTCACTGCTGAGGCTGTTCTACAGTTGTGTGTCACAAGGTACATCTCC
ATTCATGGATGCGCTAACAGCCAACGGAACAGTCACCATACAAACATCTGTAACAGGAGTGACA
GCCGGGAAAAGGAAATTTATTGACGACAGAAGAGACCAACCTTTTGACAAGCGGTTGCGTTTCA
GTGTGAGGCAGACAGAGAGTGCCTACAGATACAGAGATATTGTCGTCAGGAAGCAAGATGGCTT
CACCCACATCTTGTTATCCACAAAATCATCAGAGAATAACTCACTAAACCCAGAGGTGATGAAG
GAAGTGCAGAGCGCCCTGAGCACAGCCGCGGCCGACGACAGCAAGCTGGTGCTGCTCAGCGCTG
TGGGCAGCGTCTTCTGTTGTGGTCTGGACTTTATTTATTTTATACGACGCCTCACAGATGACCG
AAAGAGAGAAAGCACTAAAATGGCAGAAGCTATCAGAAACTTCGTGAATACTTTCATTCAGTTT
AAGAAGCCTATTATTGTAGCTGTTAATGGCCCAGCCATTGGACTAGGAGCATCCATATTGCCTC
TTTGTGATGTGGTTTGGGCTAACGAAAAGGCTTGGTTTCAAACACCCTATACCACCTTCGGACA
GAGTCCAGATGGCTGCTCTACCGTTATGTTCCCCAAGATTATGGGAGGAGCGTCTGCAAATGAG
ATGCTACTCAGTGGGAGGAAGTTGACGGCACAGGAGGCGTGCGGCAAGGGCCTGGTCTCCCAGG
TGTTTTGGCCAGGAACCTTCACGCAGGAAGTCATGGTTCGAATCAAGGAGCTGGCCTCATGTAA
CCCAATTGTCCTGGAGGAATCCAAAGCCCTGGTGCGCTGCAATATGAAGATGGAGTTGGAGCAG
GCCAATGAGAGAGAGTGTGACGCACTGAAGAAGATCTGGGGCTCGGCCCAGGGCATGGACTCCA
TGTTAAAGTACTTACAGAGGAAAATCGATGAGTTCTGATTGGCAGGCTGAGCAGGACACCAGCG
ACTCCCACTTGCTACGGTCGTTCTTAACAGTAGCTTGTGTTTGGAGGCAGACCTGGGAACATCC
AGGCTATTTATTGCCGACGCGTTTTTAAGTACTGTAACTTTAAAATAACTACAAGGCTTCTTTG
TCTAAGCGTCTTTATTTTATACTCATGTATACACAAGTATAAAAATGTAATTGAGCACTAGGCT
GCTCCTGGAAGCTCTAATTTTCTTGTAAGCTAGTTGTGGATTTTTTTTTGTTTTGTTTTGTTTT
GTTTTTTTGTTTTTAAAAGGAATTATGTTTTCATTTGGGGTGACAGAAGAGTTTGGAATAATGT
TTGTTTTACTCTTTTTTTTTTTTTAATCTAGATCATAGACCCTAAAGAATACTAGCCATCATTG
TCCCCTCCCTCTACTGAAACATGTAGAAATGTTTCAAACACGTTCCTGCCTCTAGGGGGGAGGG
GGAGGGGCAAGTACCTCAATGCTGGAAACAGTTCTGATCAAAATTAAGACCAATCTTGCAGGAA
AAAGCATCACCGATGGAAAATCCCACAGGGTTGTGGGTTTGTGCTGAGACGCCCACCGACTCGA
ACTTTCTTACGGTTCTTACCCAGCCACCAGGAAGAGCCTAGAGTGTCTAGAGGAAAGCGGGTGG
TCCAGTGTCTGTGAGTCACTCCACAACTAAGTTATGAATTAGCGTTAGTGGTTTAAATGGTTTT
TCTGGCCCTTTTGAAAAATAACTACATAAGTACTTCTTGTGGCTGGGTGAGAAATACTACTTTG
CATAGTTTTCTTTGTCTCTCTGCAGATGTGACTGATGTTATTACACCAAAAGTATTTTTTATGT
TTATAAAGTGTAATTTTTAGGCTCACTTAGAATATATTTTATTTAATTTAAAATTCTCTTGGCA
CACTATTAAATACATAAACTCCTTTCAAAACAGAAAAGAACTACCTTATATTTGACATTTATTA
TCCACGGTCTCTGCTTCTATGTCTGCCGTATACTGCGCACGGTTTCGTGTACACGAGTACCCCG
TGGTATGGGGACTAACTACAGAGGCCTGTTACTACTAAGGCTTCTAGGCTTGCAATCATTGAAT
GTATGAAGACTGAAATAAAATCAAAACCTTATTTTTGTACAGTTTTGAAGTTTATACTCAGAAC
TGACGCCTCCCCGGCCACGTGGAGCGCTGTGCAGTGTGTAAATCTGTCTTTACCTTGGATGGAT
TGGTACAGTATTTTTGCATCTGTGGGACCTACTCTTTTGTTCAGTAGTTTGAACTATATATAAA
CTGTACACTCTGTAAAGTTTTTATAGAATAAATATTCAGCTGTGAAAACTGGTTAAATAAAACT
AATATTTCTTAACACA

hide sequence

RefSeq Acc Id:

XM_017600601 ⟹ XP_017456090

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	29,188,697 - 29,324,097 (-)	NCBI
mRatBN7.2	17	28,982,009 - 29,118,731 (-)	NCBI
Rnor_6.0	17	29,672,925 - 29,809,655 (-)	NCBI

Sequence:

show sequence

CCCGGAACGGAGTCCGTGCTCCCCTTGGCCGCCCCGCCCCGCCGCCTCCCACCCCTCCCGCGAG
GGCGGCCCGAAAACCCGGAGCGCGGGAGCACTGCTCCGCCGGGTCGGGCGGCAGCACTGGGCAT
GCTCAGTAGCCGGGGCAGGTTTGTCGGTCGCAAGTAGGAAGCTTTTTGCACTACACCGGAGACC
GGGAGCCACGGATCCCGCCGCACAGCCCGCACCGCCGCCGCGCCCGCCCCAGCCCGTCCGTCCC
CTGGCGGGCGCGATGAACCCGCGCCTGAGCCTCAGCCGGCCCGCTGGGCACTGAGCGCGGGCGC
CCAGGGCGCGTTGCGCAGCTGCTCCTGCGCACAACCCCGCTGCCGCCGGCCCGCACCGGCCGCC
CGGAGCGAGAGGCTGGTCCGTGCACTGCGCCCGGCGCCGGCCGCGGAGCAGGAAGCGCAGGCCA
CGCAGGGACCCAACTGGAACAAAGTGTCTACCGCCGGGTGCCGCGCCCCGACCCCGCCGCGCCC
CTGCGCCGCCCACCATGGCCTCCGAGGAGCTGTACGAGCAAAATAATGCGGTTCCTGCAACAGT
CTCAGATCCCGATCAAGTGTCCCCTGCAGTTCAAGACGCGGAGACTCAGGTGGAAAGTATTGTT
GACAAAAGAAAGAACAAGAAAGGGAAGACAGAGTACCTGGTGCGATGGAAAGGCTATGACAGTG
AGGATGACACATGGGAGCCGGAGCAGCACCTGGTAAACTGTGAGGAATACATCCATGACTTCAA
CCGGCGCCACAACGAGAGGCAAAAGGAAGGTACCCTGGCTCGTGCCAACAGAGCCTCCCCCAGC
AACGCCCGGAAGCAGATCTCCAGGTCCACCCACAGCGCCCTCTCCAAGACCAACCCCAAAGCAC
TTGTGGTAGGCAAAGATCATGAGTCCAAAACCAACCAGCTGTTGGCTACCAGCCAGAAGTTCAG
GAAAAACACAGCTCCATCTCTTGCAAACCGCAAGAACATGGACCTCGCCAAGTCAGGGATCAAA
ATTCTCGTGCCTAAGAGCCCCATTAAGGGCAGGACCTCGATTGACGGCTTCCACGGGGAGAGCC
CTGAGAAGCTGGATCAGGGTGCCGAGGACACTGTAACCCCAGAGGTGACTGCAGAGAAGCCCAC
TGGGGCTTTGCTGGGCCCTGGTGCAGAACGAGCCAGGATGGGGAGCAGGCCCCGAATACATTCA
CTAGTGCCTCAGGTTTCTGGCCCCGTGACTGCTGCCATGGCCACGACCTTAGCTGTTAATGGAA
AAGGTTCCCTTTGTTCTTCAAAGGAGTCATGTGAAGTATCGTGTCCTTTCTCACTGCTGAGGCT
GTTCTACAGTTGTGTGTCACAAGGTACATCTCCATTCATGGATGCGCTAACAGCCAACGGAACA
GTCACCATACAAACATCTGTAACAGGAGTGACAGCCGGGAAAAGGAAATTTATTGACGACAGAA
GAGACCAACCTTTTGACAAGCGGTTGCGTTTCAGTGTGAGGCAGACAGAGAGTGCCTACAGATA
CAGAGATATTGTCGTCAGGAAGCAAGATGGCTTCACCCACATCTTGTTATCCACAAAATCATCA
GAGAATAACTCACTAAACCCAGAGGTGATGAAGGAAGTGCAGAGCGCCCTGAGCACAGCCGCGG
CCGACGACAGCAAGCTGGTGCTGCTCAGCGCTGTGGGCAGCGTCTTCTGTTGTGGTCTGGACTT
TATTTATTTTATACGACGCCTCACAGATGACCGAAAGAGAGAAAGCACTAAAATGGCAGAAGCT
ATCAGAAACTTCGTGAATACTTTCATTCAGTTTAAGAAGCCTATTATTGTAGCTGTTAATGGCC
CAGCCATTGGACTAGGAGCATCCATATTGCCTCTTTGTGATGTGGTTTGGGCTAACGAAAAGGC
TTGGTTTCAAACACCCTATACCACCTTCGGACAGAGTCCAGATGGCTGCTCTACCGTTATGTTC
CCCAAGATTATGGGAGGAGCGTCTGCAAATGAGATGCTACTCAGTGGGAGGAAGTTGACGGCAC
AGGAGGCGTGCGGCAAGGGCCTGGTCTCCCAGGTGTTTTGGCCAGGAACCTTCACGCAGGAAGT
CATGGTTCGAATCAAGGAGCTGGCCTCATGTAACCCAATTGTCCTGGAGGAATCCAAAGCCCTG
GTGCGCTGCAATATGAAGATGGAGTTGGAGCAGGCCAATGAGAGAGAGTGTGACGCACTGAAGA
AGATCTGGGGCTCGGCCCAGGGCATGGACTCCATGTTAAAGTACTTACAGAGGAAAATCGATGA
GTTCTGATTGGCAGGCTGAGCAGGACACCAGCGACTCCCACTTGCTACGGTCGTTCTTAACAGT
AGCTTGTGTTTGGAGGCAGACCTGGGAACATCCAGGCTATTTATTGCCGACGCGTTTTTAAGTA
CTGTAACTTTAAAATAACTACAAGGCTTCTTTGTCTAAGCGTCTTTATTTTATACTCATGTATA
CACAAGTATAAAAATGTAATTGAGCACTAGGCTGCTCCTGGAAGCTCTAATTTTCTTGTAAGCT
AGTTGTGGATTTTTTTTTGTTTTGTTTTGTTTTGTTTTTTTGTTTTTAAAAGGAATTATGTTTT
CATTTGGGGTGACAGAAGAGTTTGGAATAATGTTTGTTTTACTCTTTTTTTTTTTTTAATCTAG
ATCATAGACCCTAAAGAATACTAGCCATCATTGTCCCCTCCCTCTACTGAAACATGTAGAAATG
TTTCAAACACGTTCCTGCCTCTAGGGGGGAGGGGGAGGGGCAAGTACCTCAATGCTGGAAACAG
TTCTGATCAAAATTAAGACCAATCTTGCAGGAAAAAGCATCACCGATGGAAAATCCCACAGGGT
TGTGGGTTTGTGCTGAGACGCCCACCGACTCGAACTTTCTTACGGTTCTTACCCAGCCACCAGG
AAGAGCCTAGAGTGTCTAGAGGAAAGCGGGTGGTCCAGTGTCTGTGAGTCACTCCACAACTAAG
TTATGAATTAGCGTTAGTGGTTTAAATGGTTTTTCTGGCCCTTTTGAAAAATAACTACATAAGT
ACTTCTTGTGGCTGGGTGAGAAATACTACTTTGCATAGTTTTCTTTGTCTCTCTGCAGATGTGA
CTGATGTTATTACACCAAAAGTATTTTTTATGTTTATAAAGTGTAATTTTTAGGCTCACTTAGA
ATATATTTTATTTAATTTAAAATTCTCTTGGCACACTATTAAATACATAAACTCCTTTCAAAAC
AGAAAAGAACTACCTTATATTTGACATTTATTATCCACGGTCTCTGCTTCTATGTCTGCCGTAT
ACTGCGCACGGTTTCGTGTACACGAGTACCCCGTGGTATGGGGACTAACTACAGAGGCCTGTTA
CTACTAAGGCTTCTAGGCTTGCAATCATTGAATGTATGAAGACTGAAATAAAATCAAAACCTTA
TTTTTGTACAGTTTTGAAGTTTATACTCAGAACTGACGCCTCCCCGGCCACGTGGAGCGCTGTG
CAGTGTGTAAATCTGTCTTTACCTTGGATGGATTGGTACAGTATTTTTGCATCTGTGGGACCTA
CTCTTTTGTTCAGTAGTTTGAACTATATATAAACTGTACACTCTGTAAAGTTTTTATAGAATAA
ATATTCAGCTGTGAAAACTGGTTAAATAAAACTAATATTTCTTAACACA

hide sequence

RefSeq Acc Id:

XM_039095879 ⟹ XP_038951807

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	29,188,697 - 29,409,805 (-)	NCBI
mRatBN7.2	17	28,982,009 - 29,204,343 (-)	NCBI

RefSeq Acc Id:

XM_039095880 ⟹ XP_038951808

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	29,188,697 - 29,318,519 (-)	NCBI
mRatBN7.2	17	28,982,009 - 29,113,046 (-)	NCBI

RefSeq Acc Id:

XM_039095881 ⟹ XP_038951809

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	29,188,697 - 29,324,216 (-)	NCBI
mRatBN7.2	17	28,982,009 - 29,118,723 (-)	NCBI

RefSeq Acc Id:

XM_039095882 ⟹ XP_038951810

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	29,188,697 - 29,324,097 (-)	NCBI
mRatBN7.2	17	28,982,009 - 29,118,728 (-)	NCBI

RefSeq Acc Id:

XM_063276580 ⟹ XP_063132650

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	29,188,697 - 29,324,102 (-)	NCBI

RefSeq Acc Id:

XM_063276581 ⟹ XP_063132651

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	29,188,697 - 29,409,805 (-)	NCBI

RefSeq Acc Id:

XM_063276582 ⟹ XP_063132652

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	29,188,697 - 29,252,510 (-)	NCBI

RefSeq Acc Id:

XM_063276583 ⟹ XP_063132653

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	29,189,957 - 29,409,805 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014167	(Get FASTA)	NCBI Sequence Viewer
	XP_006253901	(Get FASTA)	NCBI Sequence Viewer
	XP_006253902	(Get FASTA)	NCBI Sequence Viewer
	XP_017456089	(Get FASTA)	NCBI Sequence Viewer
	XP_017456090	(Get FASTA)	NCBI Sequence Viewer
	XP_038951807	(Get FASTA)	NCBI Sequence Viewer
	XP_038951808	(Get FASTA)	NCBI Sequence Viewer
	XP_038951809	(Get FASTA)	NCBI Sequence Viewer
	XP_038951810	(Get FASTA)	NCBI Sequence Viewer
	XP_063132650	(Get FASTA)	NCBI Sequence Viewer
	XP_063132651	(Get FASTA)	NCBI Sequence Viewer
	XP_063132652	(Get FASTA)	NCBI Sequence Viewer
	XP_063132653	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79003	(Get FASTA)	NCBI Sequence Viewer
	EDL98290	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000048651.4
	ENSRNOP00000078650.1
	ENSRNOP00000078746.1
	ENSRNOP00000080331.1
	ENSRNOP00000087116.1
	ENSRNOP00000095115.1
	ENSRNOP00055018708
	ENSRNOP00060012997
	ENSRNOP00065009604
GenBank Protein	Q6AYK9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001014167 ⟸ NM_001014145

- UniProtKB:

Q6AYK9 (UniProtKB/Swiss-Prot), A6J7E0 (UniProtKB/TrEMBL), A0A8I6A2N0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGLGSSQPSTKEAEPCTLQEKEEHPVDDTRQQNNAVPATVSDPDQVSPAVQDAETQVESIVDKR
KNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHNERQKEGTLARANRASPSNAR
KQISRSTHSALSKTNPKALVVGKDHESKTNQLLATSQKFRKNTAPSLANRKNMDLAKSGIKILV
PKSPIKGRTSIDGFHGESPEKLDQGAEDTVTPEVTAEKPTGALLGPGAERARMGSRPRIHSLVP
QVSGPVTAAMATTLAVNGKGTSPFMDALTANGTVTIQTSVTGVTAGKRKFIDDRRDQPFDKRLR
FSVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMKEVQSALSTAAADDSKLVLLS
AVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASIL
PLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVS
QVFWPGTFTQEVMVRIKELASCNPIVLEESKALVRCNMKMELEQANERECDALKKIWGSAQGMD
SMLKYLQRKIDEF

hide sequence

RefSeq Acc Id:	XP_006253901 ⟸ XM_006253839
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6G6F9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASEELYEVESIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHNERQK EGTLARANRASPSNARKQISRSTHSALSKTNPKALVVGKDHESKTNQLLATSQKFRKNTAPSLA NRKNMDLAKSGIKILVPKSPIKGRTSIDGFHGESPEKLDQGAEDTVTPEVTAEKPTGALLGPGA ERARMGSRPRIHSLVPQVSGPVTAAMATTLAVNGKGSLCSSKESCEVSCPFSLLRLFYSCVSQG TSPFMDALTANGTVTIQTSVTGVTAGKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQ DGFTHILLSTKSSENNSLNPEVMKEVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLT DDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTT FGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELA SCNPIVLEESKALVRCNMKMELEQANERECDALKKIWGSAQGMDSMLKYLQRKIDEF hide sequence

RefSeq Acc Id:	XP_006253902 ⟸ XM_006253840
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6G6F9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLPPSSQVESIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHNERQKE GTLARANRASPSNARKQISRSTHSALSKTNPKALVVGKDHESKTNQLLATSQKFRKNTAPSLAN RKNMDLAKSGIKILVPKSPIKGRTSIDGFHGESPEKLDQGAEDTVTPEVTAEKPTGALLGPGAE RARMGSRPRIHSLVPQVSGPVTAAMATTLAVNGKGSLCSSKESCEVSCPFSLLRLFYSCVSQGT SPFMDALTANGTVTIQTSVTGVTAGKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQD GFTHILLSTKSSENNSLNPEVMKEVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTD DRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTF GQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELAS CNPIVLEESKALVRCNMKMELEQANERECDALKKIWGSAQGMDSMLKYLQRKIDEF hide sequence

RefSeq Acc Id:	XP_017456089 ⟸ XM_017600600
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QNJ4 (UniProtKB/TrEMBL), A0A8I6A2N0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGLGSSQPSTKEAEPCTLQEKEEHPVDDTRQQNNAVPATVSDPDQVSPAVQDAETQVESIVDKR KNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHNERQKEGTLARANRASPSNAR KQISRSTHSALSKTNPKALVVGKDHESKTNQLLATSQKFRKNTAPSLANRKNMDLAKSGIKILV PKSPIKGRTSIDGFHGESPEKLDQGAEDTVTPEVTAEKPTGALLGPGAERARMGSRPRIHSLVP QVSGPVTAAMATTLAVNGKGSLCSSKESCEVSCPFSLLRLFYSCVSQGTSPFMDALTANGTVTI QTSVTGVTAGKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENN SLNPEVMKEVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRN FVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKI MGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPIVLEESKALVRC NMKMELEQANERECDALKKIWGSAQGMDSMLKYLQRKIDEF hide sequence

RefSeq Acc Id:	XP_017456090 ⟸ XM_017600601
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6G6F9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASEELYEQNNAVPATVSDPDQVSPAVQDAETQVESIVDKRKNKKGKTEYLVRWKGYDSEDDTW EPEQHLVNCEEYIHDFNRRHNERQKEGTLARANRASPSNARKQISRSTHSALSKTNPKALVVGK DHESKTNQLLATSQKFRKNTAPSLANRKNMDLAKSGIKILVPKSPIKGRTSIDGFHGESPEKLD QGAEDTVTPEVTAEKPTGALLGPGAERARMGSRPRIHSLVPQVSGPVTAAMATTLAVNGKGSLC SSKESCEVSCPFSLLRLFYSCVSQGTSPFMDALTANGTVTIQTSVTGVTAGKRKFIDDRRDQPF DKRLRFSVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMKEVQSALSTAAADDSK LVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGL GASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACG KGLVSQVFWPGTFTQEVMVRIKELASCNPIVLEESKALVRCNMKMELEQANERECDALKKIWGS AQGMDSMLKYLQRKIDEF hide sequence

Ensembl Acc Id:

ENSRNOP00000048651 ⟸ ENSRNOT00000048757

RefSeq Acc Id:	XP_038951807 ⟸ XM_039095879
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6A2N0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951810 ⟸ XM_039095882
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038951809 ⟸ XM_039095881
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I6G6F9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038951808 ⟸ XM_039095880
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6G6F9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000095115 ⟸ ENSRNOT00000100703

Ensembl Acc Id:

ENSRNOP00000087116 ⟸ ENSRNOT00000096321

Ensembl Acc Id:

ENSRNOP00000078746 ⟸ ENSRNOT00000102044

Ensembl Acc Id:

ENSRNOP00000078650 ⟸ ENSRNOT00000106207

Ensembl Acc Id:

ENSRNOP00000080331 ⟸ ENSRNOT00000119808

RefSeq Acc Id:	XP_063132651 ⟸ XM_063276581
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063132650 ⟸ XM_063276580
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6G3K3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132652 ⟸ XM_063276582
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I5ZLF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132653 ⟸ XM_063276583
- Peptide Label:	isoform X11

Protein Domains

Chromo

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AYK9-F1-model_v2	AlphaFold	Q6AYK9	1-589	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700404

Promoter ID:

EPDNEW_R10927

Type:

multiple initiation site

Name:

Cdyl_1

Description:

chromodomain Y-like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	29,895,390 - 29,895,450	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1549745	AgrOrtholog
BioCyc Gene	G2FUF-9628	BioCyc
Ensembl Genes	ENSRNOG00000032215	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055013448	UniProtKB/Swiss-Prot
	ENSRNOG00060009819	UniProtKB/Swiss-Prot
	ENSRNOG00065008216	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000048757.4	UniProtKB/TrEMBL
	ENSRNOT00000096321.1	UniProtKB/TrEMBL
	ENSRNOT00000100703.1	UniProtKB/Swiss-Prot
	ENSRNOT00000102044.1	UniProtKB/TrEMBL
	ENSRNOT00000106207.1	UniProtKB/TrEMBL
	ENSRNOT00000119808.1	UniProtKB/TrEMBL
	ENSRNOT00055023066	UniProtKB/Swiss-Prot
	ENSRNOT00060016635	UniProtKB/Swiss-Prot
	ENSRNOT00065013023	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.12.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	2.40.50.40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7112869	IMAGE-MGC_LOAD
InterPro	Chromo-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Chromo/chromo_shadow_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Chromo_domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Chromodomain_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ClpP/crotonase-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ECH/Chromodomain_protein	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Enoyl-CoA_hydra/iso	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Enoyl-CoA_hydra_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:361237	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:93912	IMAGE-MGC_LOAD
NCBI Gene	361237	ENTREZGENE
PANTHER	CHROMODOMAIN Y-LIKE PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR43684	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Chromo	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ECH_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cdyl	PhenoGen
PROSITE	CHROMO_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CHROMO_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000032215	RatGTEx
	ENSRNOG00055013448	RatGTEx
	ENSRNOG00060009819	RatGTEx
	ENSRNOG00065008216	RatGTEx
SMART	CHROMO	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF52096	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF54160	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZLF2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A2N0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G3K3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G6F9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QNJ4	ENTREZGENE, UniProtKB/TrEMBL
	A6J7E0	ENTREZGENE, UniProtKB/TrEMBL
	CDYL_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-07-21	Cdyl	chromodomain Y-like	Cdyl	chromodomain protein, Y-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-02-04	Cdyl	chromodomain protein, Y-like	Cdyl	chromodomain protein, Y chromosome-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Cdyl	chromodomain protein, Y chromosome-like	LOC361237	similar to testis-specific chromodomain Y-like protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-09-15	LOC361237	similar to testis-specific chromodomain Y-like protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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