Cdyl (chromodomain protein, Y chromosome-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cdyl (chromodomain protein, Y chromosome-like) Mus musculus
Analyze
Symbol: Cdyl
Name: chromodomain protein, Y chromosome-like
RGD ID: 1556912
MGI Page MGI
Description: Enables chromatin binding activity. Involved in negative regulation of peptidyl-lysine crotonylation; random inactivation of X chromosome; and spermatid development. Located in chromosome; cytoplasm; and nucleus. Is expressed in 2-cell stage embryo; 4-cell stage embryo; cap mesenchyme; and ureteric tip. Used to study epilepsy. Orthologous to human CDYL (chromodomain Y like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI325931; CDY-like; chromodomain Y-like protein; crotonyl-CoA hydratase; putative histone acetyltransferase Cdyl
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm7584  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391335,843,801 - 36,058,047 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1335,843,816 - 36,058,046 (+)EnsemblGRCm39 Ensembl
GRCm381335,659,818 - 35,874,064 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1335,659,833 - 35,874,063 (+)EnsemblGRCm38mm10GRCm38
MGSCv371335,751,731 - 35,965,933 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361335,667,345 - 35,881,089 (+)NCBIMGSCv36mm8
Celera1336,773,088 - 36,987,151 (+)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1314.39NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IDA)
cytoplasm  (IDA)
nuclear speck  (IEA,ISO)
nucleus  (IBA,IDA,ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10192397   PMID:10349636   PMID:10512203   PMID:10655032   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12837688   PMID:12904583   PMID:12947414   PMID:14610273  
PMID:15489334   PMID:15645444   PMID:15840001   PMID:16141072   PMID:16141073   PMID:18450745   PMID:18799693   PMID:20059953   PMID:21267068   PMID:21731673   PMID:21873635   PMID:23282990  
PMID:23332759   PMID:24144980   PMID:25680957   PMID:27932493   PMID:28076783   PMID:28803779   PMID:30665597   PMID:30850578   PMID:32522972   PMID:35119221   PMID:35918147   PMID:36130284  
PMID:36464171   PMID:37155872   PMID:38355793   PMID:39378153  


Genomics

Comparative Map Data
Cdyl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391335,843,801 - 36,058,047 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1335,843,816 - 36,058,046 (+)EnsemblGRCm39 Ensembl
GRCm381335,659,818 - 35,874,064 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1335,659,833 - 35,874,063 (+)EnsemblGRCm38mm10GRCm38
MGSCv371335,751,731 - 35,965,933 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361335,667,345 - 35,881,089 (+)NCBIMGSCv36mm8
Celera1336,773,088 - 36,987,151 (+)NCBICelera
Cytogenetic Map13A3.3NCBI
cM Map1314.39NCBI
CDYL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3864,706,138 - 4,955,544 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl64,706,159 - 4,955,551 (+)EnsemblGRCh38hg38GRCh38
GRCh3764,706,372 - 4,955,778 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3664,651,392 - 4,900,777 (+)NCBINCBI36Build 36hg18NCBI36
Celera65,934,977 - 6,184,408 (+)NCBICelera
Cytogenetic Map6p25.1NCBI
HuRef64,582,442 - 4,832,036 (+)NCBIHuRef
CHM1_164,708,950 - 4,958,157 (+)NCBICHM1_1
T2T-CHM13v2.064,575,080 - 4,824,553 (+)NCBIT2T-CHM13v2.0
Cdyl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81729,188,697 - 29,409,805 (-)NCBIGRCr8
mRatBN7.21728,982,009 - 29,204,345 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1728,982,037 - 29,204,313 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1728,842,955 - 29,058,523 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01730,446,503 - 30,662,290 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01728,818,438 - 29,033,458 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01729,672,925 - 29,895,416 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1729,674,164 - 29,895,386 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01731,568,495 - 31,795,097 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41735,290,255 - 35,517,646 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1728,583,965 - 28,798,437 (-)NCBICelera
Cytogenetic Map17p12NCBI
Cdyl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554658,568,121 - 8,780,569 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554658,570,197 - 8,780,551 (-)NCBIChiLan1.0ChiLan1.0
CDYL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2519,400,677 - 19,584,327 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1615,404,782 - 15,588,429 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v064,607,088 - 4,790,742 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.164,794,549 - 4,976,777 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl64,737,306 - 4,976,777 (+)Ensemblpanpan1.1panPan2
CDYL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1354,844,757 - 5,074,967 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl354,844,779 - 5,073,670 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha354,853,975 - 5,083,877 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0355,118,280 - 5,146,543 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl354,964,027 - 5,145,246 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1354,781,582 - 5,011,396 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0354,803,787 - 5,036,379 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0356,137,854 - 6,368,214 (+)NCBIUU_Cfam_GSD_1.0
Cdyl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494619,256,632 - 19,476,186 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365347,525,612 - 7,594,813 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365347,525,618 - 7,601,184 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDYL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl72,846,090 - 2,966,240 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.172,845,903 - 2,967,537 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.273,054,156 - 3,070,657 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDYL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11767,222,212 - 67,396,735 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1767,222,210 - 67,396,630 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660444,730,625 - 4,904,706 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdyl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475620,261,019 - 20,406,338 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475620,261,150 - 20,471,697 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cdyl
7641 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:626
Count of miRNA genes:268
Interacting mature miRNAs:287
Transcripts:ENSMUST00000075220, ENSMUST00000163595
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357591Tesq1_mtestis weight QTL 1 (mouse)Not determined132061551255720517Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132047761259821605Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132791846961918560Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
1301455Bmd3_mbone mineral density 3 (mouse)Not determined13347761237477820Mouse
10045625Heal23_mwound healing/regeneration 23 (mouse)Not determined13347761237477820Mouse
10402494Igmsc1_mimmunoglobulin M secreting cells 1 (mouse)Not determined131716854544918560Mouse
13463469Gssq1_mglomerulosclerosis severity QTL 1 (mouse)131906090853061050Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
10045624Heal24_mwound healing/regeneration (mouse)Not determined13347761237477820Mouse
12880423V25Dq7_mvitamin D inactive form serum level QTL 7 (mouse)131958398353583983Mouse
1301367Twq1_mtestis weight QTL 1 (mouse)Not determined13361551237615672Mouse
1558898Hpi1_mhapatic PMN infiltration 1 (mouse)Not determined13441402553101640Mouse
4142489Ath25_matherosclerosis 25 (mouse)Not determined2583652959836529Mouse
10755533Chol18_mcholesterol 18 (mouse)133096946764969467Mouse
1301880Hypt_mhypertension (mouse)Not determined131815679252156924Mouse
10045618Heal17_mwound healing/regeneration 17 (mouse)Not determined132074693954747056Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132821737962217515Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
1301984Pbd2_mpeak bone density 2 (mouse)Not determined131718950838947406Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132821044262210544Mouse
1301733Heal3_mwound healing/regeneration 3 (mouse)Not determined13368020037680343Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132821737962217515Mouse

Markers in Region
D13Mit274  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381335,736,190 - 35,736,309UniSTSGRCm38
MGSCv371335,828,059 - 35,828,178UniSTSGRCm37
Celera1336,849,280 - 36,849,399UniSTS
Celera1333,781,686 - 33,781,805UniSTS
Cytogenetic Map13A3.3UniSTS
cM Map1316.0UniSTS
Whitehead Genetic137.7UniSTS
Whitehead_YAC13 UniSTS
D13Mit85  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381335,671,614 - 35,671,787UniSTSGRCm38
MGSCv371335,763,483 - 35,763,656UniSTSGRCm37
Celera1336,784,695 - 36,784,868UniSTS
Cytogenetic Map13A3.3UniSTS
cM Map1316.0UniSTS
Whitehead Genetic137.7UniSTS
Whitehead/MRC_RH13375.11UniSTS
Whitehead_YAC13 UniSTS
AI325931  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381335,873,724 - 35,873,960UniSTSGRCm38
MGSCv371335,965,593 - 35,965,829UniSTSGRCm37
Celera1336,986,811 - 36,987,047UniSTS
Cytogenetic Map13A3.3UniSTS
Whitehead/MRC_RH13376.62UniSTS
UniSTS:236992  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381335,873,685 - 35,873,888UniSTSGRCm38
MGSCv371335,965,554 - 35,965,757UniSTSGRCm37
Celera1336,986,772 - 36,986,975UniSTS
Cytogenetic Map13A3.3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001123386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_166191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_382045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC141476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC162940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF081260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF081261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG229669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY090531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000075220   ⟹   ENSMUSP00000074707
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1335,843,816 - 36,058,046 (+)Ensembl
GRCm38.p6 Ensembl1335,659,833 - 35,874,063 (+)Ensembl
Ensembl Acc Id: ENSMUST00000163595   ⟹   ENSMUSP00000131784
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1335,925,296 - 36,058,041 (+)Ensembl
GRCm38.p6 Ensembl1335,741,313 - 35,874,058 (+)Ensembl
Ensembl Acc Id: ENSMUST00000225602   ⟹   ENSMUSP00000153274
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1335,843,910 - 35,999,927 (+)Ensembl
GRCm38.p6 Ensembl1335,659,927 - 35,815,944 (+)Ensembl
Ensembl Acc Id: ENSMUST00000226071
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1335,946,795 - 36,000,073 (+)Ensembl
GRCm38.p6 Ensembl1335,762,812 - 35,816,090 (+)Ensembl
RefSeq Acc Id: NM_001123386   ⟹   NP_001116858
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391335,925,385 - 36,058,047 (+)NCBI
GRCm381335,741,402 - 35,874,064 (+)NCBI
MGSCv371335,751,731 - 35,965,933 (+)RGD
Celera1336,773,088 - 36,987,151 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001378941   ⟹   NP_001365870
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391335,925,445 - 36,058,047 (+)NCBI
GRCm381335,741,462 - 35,874,064 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001378942   ⟹   NP_001365871
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391335,925,445 - 36,058,047 (+)NCBI
GRCm381335,741,462 - 35,874,064 (+)NCBI
Sequence:
RefSeq Acc Id: NM_009881   ⟹   NP_034011
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391335,843,845 - 36,058,047 (+)NCBI
GRCm381335,659,862 - 35,874,064 (+)NCBI
MGSCv371335,751,731 - 35,965,933 (+)RGD
Celera1336,773,088 - 36,987,151 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_166191
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391335,925,445 - 36,058,047 (+)NCBI
GRCm381335,741,462 - 35,874,064 (+)NCBI
Sequence:
RefSeq Acc Id: XR_382045
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391335,843,801 - 36,058,047 (+)NCBI
GRCm381335,659,818 - 35,872,816 (+)NCBI
Sequence:
RefSeq Acc Id: NP_034011   ⟸   NM_009881
- Peptide Label: isoform 1
- UniProtKB: Q3U0W2 (UniProtKB/Swiss-Prot),   Q6P6N3 (UniProtKB/Swiss-Prot),   Q9WTK2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001116858   ⟸   NM_001123386
- Peptide Label: isoform 2
- UniProtKB: Q9WTK2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001365870   ⟸   NM_001378941
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001365871   ⟸   NM_001378942
- Peptide Label: isoform 4
- UniProtKB: Q3TSA1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000131784   ⟸   ENSMUST00000163595
Ensembl Acc Id: ENSMUSP00000153274   ⟸   ENSMUST00000225602
Ensembl Acc Id: ENSMUSP00000074707   ⟸   ENSMUST00000075220
Protein Domains
Chromo

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WTK2-F1-model_v2 AlphaFold Q9WTK2 1-593 view protein structure

Promoters
RGD ID:8680092
Promoter ID:EPDNEW_M18076
Type:single initiation site
Name:Cdyl_3
Description:Mus musculus chromodomain protein, Y chromosome-like , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18077  EPDNEW_M18078  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381335,662,137 - 35,662,197EPDNEW
RGD ID:8680094
Promoter ID:EPDNEW_M18077
Type:multiple initiation site
Name:Cdyl_2
Description:Mus musculus chromodomain protein, Y chromosome-like , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18076  EPDNEW_M18078  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381335,738,509 - 35,738,569EPDNEW
RGD ID:8680118
Promoter ID:EPDNEW_M18078
Type:initiation region
Name:Cdyl_1
Description:Mus musculus chromodomain protein, Y chromosome-like , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18076  EPDNEW_M18077  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381335,741,462 - 35,741,522EPDNEW
RGD ID:6823772
Promoter ID:MM_KWN:13814
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:UC007QCF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361335,830,126 - 35,830,626 (+)MPROMDB
RGD ID:6823774
Promoter ID:MM_KWN:13815
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung
Transcripts:UC007QCG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361335,832,441 - 35,833,577 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1339956 AgrOrtholog
Ensembl Genes ENSMUSG00000059288 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000075220 ENTREZGENE
  ENSMUST00000075220.14 UniProtKB/Swiss-Prot
  ENSMUST00000163595 ENTREZGENE
  ENSMUST00000163595.3 UniProtKB/Swiss-Prot
  ENSMUST00000225602.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.12.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.40.50.40 UniProtKB/Swiss-Prot
InterPro Chromo-like_dom_sf UniProtKB/Swiss-Prot
  Chromo/chromo_shadow_dom UniProtKB/Swiss-Prot
  Chromo_domain UniProtKB/Swiss-Prot
  Chromodomain_CS UniProtKB/Swiss-Prot
  ClpP/crotonase-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ECH/Chromodomain_protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Enoyl-CoA_hydra/iso UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Enoyl-CoA_hydra_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12593 UniProtKB/Swiss-Prot
MGD MGI:1339956 ENTREZGENE
NCBI Gene 12593 ENTREZGENE
PANTHER CHROMODOMAIN Y-LIKE PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR43684 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Chromo UniProtKB/Swiss-Prot
  ECH_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cdyl PhenoGen
PROSITE CHROMO_1 UniProtKB/Swiss-Prot
  CHROMO_2 UniProtKB/Swiss-Prot
SMART CHROMO UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52096 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54160 UniProtKB/Swiss-Prot
UniProt A0A286YDJ1_MOUSE UniProtKB/TrEMBL
  CDYL_MOUSE UniProtKB/Swiss-Prot
  Q3TSA1 ENTREZGENE, UniProtKB/TrEMBL
  Q3U0W2 ENTREZGENE
  Q6P6N3 ENTREZGENE
  Q9WTK2 ENTREZGENE
UniProt Secondary Q3U0W2 UniProtKB/Swiss-Prot
  Q6P6N3 UniProtKB/Swiss-Prot