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Gene: Ppm1j (protein phosphatase, Mg2+/Mn2+ dependent, 1J) Rattus norvegicus

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Symbol:

Ppm1j

Name:

protein phosphatase, Mg2+/Mn2+ dependent, 1J

RGD ID:

1359104

Description:

Predicted to enable [pyruvate dehydrogenase (acetyl-transferring)]-phosphatase activity. Predicted to be active in mitochondrion. Orthologous to human PPM1J (protein phosphatase, Mg2+/Mn2+ dependent 1J); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MGC95205; PP2C-zeta; protein phosphatase 1J; protein phosphatase 2a, catalytic subunit, zeta isoform; protein phosphatase 2C isoform zeta; protein phosphatase 2C zeta

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PPM1J (protein phosphatase, Mg2+/Mn2+ dependent 1J)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ppm1j (protein phosphatase 1J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ppm1j (protein phosphatase, Mg2+/Mn2+ dependent 1J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PPM1J (protein phosphatase, Mg2+/Mn2+ dependent 1J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PPM1J (protein phosphatase, Mg2+/Mn2+ dependent 1J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ppm1j (protein phosphatase, Mg2+/Mn2+ dependent 1J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PPM1J (protein phosphatase, Mg2+/Mn2+ dependent 1J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PPM1J (protein phosphatase, Mg2+/Mn2+ dependent 1J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ppm1j (protein phosphatase, Mg2+/Mn2+ dependent 1J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ppm1j (protein phosphatase, Mg2+/Mn2+ dependent 1J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ppm1j (protein phosphatase 1J)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PPM1J (protein phosphatase, Mg2+/Mn2+ dependent 1J)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ppm1j (protein phosphatase, Mg2+/Mn2+ dependent, 1J)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	PTC4	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	CG17598	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ppm-1.H	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ppm-1.H	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ppm1j	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	ppm1j	Alliance	DIOPT (Ensembl Compara\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	194,966,854 - 194,972,228 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	194,966,950 - 194,972,227 (+)	Ensembl				GRCr8
mRatBN7.2	2	192,278,597 - 192,283,883 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	192,278,517 - 192,283,882 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	199,873,234 - 199,878,245 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	197,745,513 - 197,750,529 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	192,562,458 - 192,567,473 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	207,263,307 - 207,268,601 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	207,262,934 - 207,268,609 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	226,682,751 - 226,687,765 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	200,039,684 - 200,044,698 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	184,745,409 - 184,750,423 (+)	NCBI		Celera
RGSC_v3.1	2	200,002,437 - 200,007,451 (+)	NCBI
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (EXP,ISO)

alpha-Zearalanol (EXP)

amitrole (EXP)

amphetamine (EXP)

benzo[a]pyrene (EXP,ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cantharidin (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

cefaloridine (EXP)

chromium(6+) (ISO)

cisplatin (ISO)

clotrimazole (EXP)

Cuprizon (EXP)

DDE (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

entinostat (ISO)

FR900359 (ISO)

furan (EXP)

genistein (ISO)

isoprenaline (ISO)

lead(0) (ISO)

Moniliformin (ISO)

monocrotaline (ISO)

N-methyl-4-phenylpyridinium (EXP)

O-methyleugenol (ISO)

okadaic acid (ISO)

orphenadrine (EXP)

panobinostat (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

PCB138 (ISO)

pentanal (ISO)

perfluorooctanoic acid (EXP)

pravastatin (EXP,ISO)

propanal (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sulfadimethoxine (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triclosan (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein dephosphorylation (ISO)

Cellular Component

mitochondrion (IBA)

Molecular Function

[pyruvate dehydrogenase (acetyl-transferring)]-phosphatase activity (IBA)

hydrolase activity (IEA)

phosphoprotein phosphatase activity (IEA)

protein binding (ISO)

protein serine/threonine phosphatase activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	A novel protein phosphatase 2C family member (PP2Czeta) is able to associate with ubiquitin conjugating enzyme 9.	Kashiwaba M, etal., FEBS Lett 2003 Mar 13;538(1-3):197-202.
3.	Molecular cloning of PP2Ceta, a novel member of the protein phosphatase 2C family.	Komaki K, etal., Biochim Biophys Acta 2003 Nov 30;1630(2-3):130-7.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Ppm1j
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	194,966,854 - 194,972,228 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	194,966,950 - 194,972,227 (+)	Ensembl				GRCr8
mRatBN7.2	2	192,278,597 - 192,283,883 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	192,278,517 - 192,283,882 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	199,873,234 - 199,878,245 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	197,745,513 - 197,750,529 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	192,562,458 - 192,567,473 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	207,263,307 - 207,268,601 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	207,262,934 - 207,268,609 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	226,682,751 - 226,687,765 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	200,039,684 - 200,044,698 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	184,745,409 - 184,750,423 (+)	NCBI		Celera
RGSC_v3.1	2	200,002,437 - 200,007,451 (+)	NCBI
Cytogenetic Map	2	q34	NCBI

PPM1J
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	112,709,998 - 112,715,332 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	112,709,994 - 112,715,336 (-)	Ensembl			hg38	GRCh38
GRCh37	1	113,252,620 - 113,257,954 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	113,054,139 - 113,059,473 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	111,483,060 - 111,488,379 (-)	NCBI		Celera
Cytogenetic Map	1	p13.2	NCBI
HuRef	1	111,111,007 - 111,116,341 (-)	NCBI		HuRef
CHM1_1	1	113,367,818 - 113,373,152 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	112,722,547 - 112,727,883 (-)	NCBI		T2T-CHM13v2.0

Ppm1j
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	104,688,322 - 104,693,334 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	104,688,372 - 104,693,334 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	104,780,952 - 104,786,023 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	104,781,056 - 104,786,018 (+)	Ensembl			mm10	GRCm38
MGSCv37	3	104,583,974 - 104,588,936 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	104,909,112 - 104,914,004 (+)	NCBI		MGSCv36	mm8
Celera	3	106,976,413 - 106,981,377 (+)	NCBI		Celera
Cytogenetic Map	3	F2.2	NCBI
cM Map	3	45.85	NCBI

Ppm1j
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955435	16,121,206 - 16,129,296 (-)	Ensembl
ChiLan1.0	NW_004955435	16,124,087 - 16,129,296 (-)	NCBI	ChiLan1.0	ChiLan1.0

PPM1J
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	114,321,041 - 114,326,385 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	113,469,169 - 113,474,513 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	115,362,626 - 115,367,968 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	124,984,454 - 124,989,928 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	124,984,624 - 124,992,615 (+)	Ensembl			panPan2	panpan1.1

PPM1J
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	62,858,620 - 62,863,869 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	62,858,338 - 62,863,884 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	62,372,319 - 62,377,558 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	64,031,992 - 64,037,231 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	64,031,698 - 64,039,294 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	62,766,663 - 62,771,901 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	62,824,684 - 62,829,917 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	63,584,435 - 63,589,674 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ppm1j
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	16,207,754 - 16,213,782 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936690	1,263,925 - 1,269,764 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936690	1,263,949 - 1,269,707 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PPM1J
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	107,723,437 - 107,728,919 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	107,723,427 - 107,728,919 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	117,792,201 - 117,797,397 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PPM1J
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	20,924,437 - 20,929,923 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	20,924,571 - 20,929,749 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	23,741,363 - 23,746,886 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ppm1j
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624772	8,491,030 - 8,496,156 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624772	8,491,020 - 8,496,183 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ppm1j
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	53,329,345 - 53,334,173 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ppm1j
39 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	80
Count of miRNA genes:	70
Interacting mature miRNAs:	73
Transcripts:	ENSRNOT00000016833
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	163997722	225110681	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	169358774	214358774	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	170656145	239614549	Rat
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	149957381	221199885	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	138595962	205135428	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	124537199	209621565	Rat
1581578	Cm49	Cardiac mass QTL 49	4.9	0.01	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	145807215	220931416	Rat
61458	Bp10	Blood pressure QTL 10	3.42		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	191709311	217961898	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	122597372	215234002	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	154723085	199723085	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	154723085	199723085	Rat
10043139	Iddm55	Insulin dependent diabetes mellitus QTL 55	3.1	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	150313808	195313808	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	154723085	199723085	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	159440891	205135267	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	154723085	199723085	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	170652929	215652929	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	159440891	220931218	Rat
4889834	Pur24	Proteinuria QTL 24	5.8	0.014	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	171994826	205135428	Rat
1359031	Bp275	Blood pressure QTL 275			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	188565047	233565047	Rat
1581499	Esta2	Estrogen-induced thymic atrophy QTL 2			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	192287802	229609668	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	154723085	199723085	Rat
9589044	Scfw1	Subcutaneous fat weight QTL 1	5.8	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	2	184856304	229856304	Rat
8694435	Bw166	Body weight QTL 166	14.08	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	2	184856304	229856304	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	159440760	195313808	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	144882354	205135428	Rat
1298083	Bp158	Blood pressure QTL 158	2.62		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	191709311	217961898	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
1357991	Ael2	Aortic elastin QTL 2	4.2	0.000071	aorta elastin amount (VT:0003905)	aortic elastin	2	169227906	214227906	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
1331745	Bp203	Blood pressure QTL 203	4.377		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	192287802	221089121	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
8694194	Abfw1	Abdominal fat weight QTL 1	11.7	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	2	184856304	229856304	Rat
61366	Iddm3	Insulin dependent diabetes mellitus QTL 3	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	192287802	237287802	Rat
1578671	Bmd10	Bone mineral density QTL 10	5.4		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	2	175931416	220931416	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	251712708	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78269809	205135428	Rat
2300189	Bmd48	Bone mineral density QTL 48	5.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	182024327	227024327	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	159440760	228950743	Rat
2301408	Kidm36	Kidney mass QTL 36		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	184482291	229482291	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	143344967	251712708	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	143746578	205135428	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	143344967	251712708	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	114384617	215381366	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150096616	195096616	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	145306936	212705578	Rat
7488929	Bp366	Blood pressure QTL 366		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	187663373	195783351	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	113746222	205135428	Rat
738013	Alc15	Alcohol consumption QTL 15	4.1	0.00022	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	2	186850607	231850607	Rat
61398	Bp50	Blood pressure QTL 50	4.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	192287802	237287802	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	114384617	215381366	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	223841096	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	117415288	205135428	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150096616	195096616	Rat
61417	Cia10	Collagen induced arthritis QTL 10	3.4		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	2	182635347	227635347	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
631522	Bp74	Blood pressure QTL 74		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	175008837	220008837	Rat
8694383	Bw158	Body weight QTL 158	7.69	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	2	184856304	229856304	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	165453811	210453811	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	163253030	208253030	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166372086	229820014	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	81	80	50	89	50	6	344	189	11	139	81	92	30	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001005540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063281642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005500269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005500270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC134077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC082053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016833 ⟹ ENSRNOP00000016833

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	194,966,950 - 194,972,227 (+)	Ensembl
mRatBN7.2 Ensembl	2	192,278,517 - 192,283,882 (+)	Ensembl
Rnor_6.0 Ensembl	2	207,262,934 - 207,268,609 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110381 ⟹ ENSRNOP00000079348

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	194,966,956 - 194,972,227 (+)	Ensembl
mRatBN7.2 Ensembl	2	192,278,839 - 192,283,882 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118224 ⟹ ENSRNOP00000082364

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	194,966,950 - 194,972,227 (+)	Ensembl
mRatBN7.2 Ensembl	2	192,278,517 - 192,283,882 (+)	Ensembl

RefSeq Acc Id:

NM_001005540 ⟹ NP_001005540

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	194,967,214 - 194,972,228 (+)	NCBI
mRatBN7.2	2	192,278,869 - 192,283,883 (+)	NCBI
Rnor_6.0	2	207,263,587 - 207,268,601 (+)	NCBI
Rnor_5.0	2	226,682,751 - 226,687,765 (+)	NCBI
RGSC_v3.4	2	200,039,684 - 200,044,698 (+)	RGD
Celera	2	184,745,409 - 184,750,423 (+)	RGD

Sequence:

show sequence

CAGCATGCTAAACCGGGTGCGCTCGGCCGTGGCGCACCTGGTGAGCTCCAGTGGCACTTCTTCC
CAGCGCTCCAAGTCTCCAGATCTGCCCAAAGCTATCTCACCGCCTCCGGGAGCCCTAGAGACAC
CTAAGAGCCCCGGGACGAAGTCTGGGAACGAGATCCCCGCGCCCCAGAAGACCGCGGAGACTCC
AGTGAGCTTCTCTCGACCCACCTTTCTGCAGCTGAGCCCCGGGGGCCTGCGACGCGCCGACGAC
CACGTAGGCCGGGCTGTGCAAAGCCCTCCGGACACCGGTCGCCGCCTGCCTTGGAGCACAGGCT
ATGCCGAGGTCATCAATGCTGGCAAGAGCAGGCACAATGAGGACCAGGCTTGCTGTGAGGTCGT
GTATGTGGAAAGCCGGAGGAGCATTACAGGGGTCTCCAGGGAGCCTAGCCATAACCAGGGATTC
AGCTTCTACTACTGGGGCCTGTTTGATGGGCACGCAGGTGGTGGAGCAGCTGAAATGGCTTCCC
GGCTCCTGCATCGCCACATCCGGGAACAGCTAAAGGATCTAGTAGAAATACTTCAGGACCCCTT
GCCACCCCCGCTCTGTCTCCCATCCACTCCAGGAACCCCAGGAGTCTCTAGCCCTTCACAGTTG
GTTAGCCCTCAGTCCTGGTCCCCACAGAAGGAAGTGACCCATGACAGCCTGGTAGTAGGGGCCA
TTGAGAACGCTTTCCAGCTCATGGATGAGCAGATGGCTCGGGAGCGGCGTGGCCACCTAGTGGA
AGGGGGCTGCTGTGCACTGGTTGTGGTATACCTGCTAGGCAAGATGTATGTGGCTAATGCAGGT
GACAGCAGGGCCATCATTGTCCGGAATGGTGAAATCATTCCAATGTCCCGGGAGTTCACACCAG
AGACAGAGCGTCAGCGTCTTCAGCTGCTTGGCTTTCTGAAACCAGAACTGCTGGGCAGTGAGTT
CACCCACCTTGAGTTTCCCCGAAGAGTTCAGCCCAAGGAACTAGGGCAGAGGATGCTGTACAGG
GACCAGAATATGACTGGCTGGGCCTACAAAAAGATTGAGTTGGAGGATCTCAGGTTTCCTCTGG
TCTGTGGAGAGGGCAAAAAGGCCCGGGTAATGGCTACCATTGGGGTGACACGGGGCTTGGGAGA
CCACAACCTTAAGGTCTGCAGTTCTACTCTGCCCATCAAGCCTTTCCTCTCCTGCTTTCCTGAA
GTACGAGTGTATGATCTGACACAGTATGAGCACTGTCCAGATGATGTGCTGGTCCTGGGAACAG
ATGGCTTATGGGATGTGACCAATGACTCTGAGGTAGCTGCCACTGTGGACAGGGTGCTGTCAAC
CTATGAGCCCAATGATCCCAGCAGGTATACAGCTCTGGCCCAAGCTCTGGTCCTGGGGGCCCGG
GGAATCCCCCGGGACCGTGGCTGGCGTCTCCCAAACAACAAGCTGGGTTCCGGGGATGACATCT
CGGTCTTCGTTATCCCCCTGGGAGGGCCAGGCAGCAGTTACTCCTGATGGGCTCAGCCCCAGCC
CTCTCACTGCCACCCCAGCATCTCCATTACCACTCTCCTCCAGCCCAAACATGGAAGTTGTGCC
CCTGACTCTCAAGTGGCCATTTGACACAGGGATGCCCACTAGTTCCAAAATTACAACAACTGTC
AAATAAAGCAGATGGACAAGCAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008761380 ⟹ XP_008759602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	194,966,899 - 194,972,228 (+)	NCBI
mRatBN7.2	2	192,278,597 - 192,283,883 (+)	NCBI
Rnor_6.0	2	207,263,308 - 207,268,601 (+)	NCBI

Sequence:

show sequence

AAATTCTAGCGGATTAAATCCAGCGGATGTCTAACCTACAGCACGACTTAAATGCTTCCTTTGT
TCCGCTTCCTTCCTACAAAAGACCCTTTCCCTCTGACACTCTGGCGGGACAAAGCAGGGATGCG
GAGAAGAGGCAAAGACGCTCCAAGTCTCCAGATCTGCCCAAAGCTATCTCACCGCCTCCGGGAG
CCCTAGAGACACCTAAGAGCCCCGGGACGAAGTCTGGGAACGAGATCCCCGCGCCCCAGAAGAC
CGCGGAGACTCCAGTGAGCTTCTCTCGACCCACCTTTCTGCAGCTGAGCCCCGGGGGCCTGCGA
CGCGCCGACGACCACGTAGGCCGGGCTGTGCAAAGCCCTCCGGACACCGGTCGCCGCCTGCCTT
GGAGCACAGGCTATGCCGAGGTCATCAATGCTGGCAAGAGCAGGCACAATGAGGACCAGGCTTG
CTGTGAGGTCGTGTATGTGGAAAGCCGGAGGAGCATTACAGGGGTCTCCAGGGAGCCTAGCCAT
AACCAGGGATTCAGCTTCTACTACTGGGGCCTGTTTGATGGGCACGCAGGTGGTGGAGCAGCTG
AAATGGCTTCCCGGCTCCTGCATCGCCACATCCGGGAACAGCTAAAGGATCTAGTAGAAATACT
TCAGGACCCCTTGCCACCCCCGCTCTGTCTCCCATCCACTCCAGGAACCCCAGGAGTCTCTAGC
CCTTCACAGTTGGTTAGCCCTCAGTCCTGGTCCCCACAGAAGGAAGTGACCCATGACAGCCTGG
TAGTAGGGGCCATTGAGAACGCTTTCCAGCTCATGGATGAGCAGATGGCTCGGGAGCGGCGTGG
CCACCTAGTGGAAGGGGGCTGCTGTGCACTGGTTGTGGTATACCTGCTAGGCAAGATGTATGTG
GCTAATGCAGGTGACAGCAGGGCCATCATTGTCCGGAATGGTGAAATCATTCCAATGTCCCGGG
AGTTCACACCAGAGACAGAGCGTCAGCGTCTTCAGCTGCTTGGCTTTCTGAAACCAGAACTGCT
GGGCAGTGAGTTCACCCACCTTGAGTTTCCCCGAAGAGTTCAGCCCAAGGAACTAGGGCAGAGG
ATGCTGTACAGGGACCAGAATATGACTGGCTGGGCCTACAAAAAGATTGAGTTGGAGGATCTCA
GGTTTCCTCTGGTCTGTGGAGAGGGCAAAAAGGCCCGGGTAATGGCTACCATTGGGGTGACACG
GGGCTTGGGAGACCACAACCTTAAGGTCTGCAGTTCTACTCTGCCCATCAAGCCTTTCCTCTCC
TGCTTTCCTGAAGTACGAGTGTATGATCTGACACAGTATGAGCACTGTCCAGATGATGTGCTGG
TCCTGGGAACAGATGGCTTATGGGATGTGACCAATGACTCTGAGGTAGCTGCCACTGTGGACAG
GGTGCTGTCAACCTATGAGCCCAATGATCCCAGCAGGTATACAGCTCTGGCCCAAGCTCTGGTC
CTGGGGGCCCGGGGAATCCCCCGGGACCGTGGCTGGCGTCTCCCAAACAACAAGCTGGGTTCCG
GGGATGACATCTCGGTCTTCGTTATCCCCCTGGGAGGGCCAGGCAGCAGTTACTCCTGATGGGC
TCAGCCCCAGCCCTCTCACTGCCACCCCAGCATCTCCATTACCACTCTCCTCCAGCCCAAACAT
GGAAGTTGTGCCCCTGACTCTCAAGTGGCCATTTGACACAGGGATGCCCACTAGTTCCAAAATT
ACAACAACTGTCAAATAAAGCAGATGGACAAGCA

hide sequence

RefSeq Acc Id:

XM_008761381 ⟹ XP_008759603

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	194,966,871 - 194,972,228 (+)	NCBI
mRatBN7.2	2	192,278,597 - 192,283,883 (+)	NCBI
Rnor_6.0	2	207,263,307 - 207,268,601 (+)	NCBI

Sequence:

show sequence

CAAATTCTAGCGGATTAAATCCAGCGGATGTCTAACCTACAGCACGACTTAAATGCTTCCTTTG
TTCCGCTTCCTTCCTACAAAAGACCCTTTCCCTCTGACACTCTGGCGGGACAAAGCAGGGATGC
GGAGAAGAGGCAAAGACGCTCCAAGTCTCCAGATCTGCCCAAAGCTATCTCACCGCCTCCGGGA
GCCCTAGAGACACCTAAGAGCCCCGGGACGAAGTCTGGGAACGAGATCCCCGCGCCCCAGAAGA
CCGCGGAGACTCCAGTGAGCTTCTCTCGACCCACCTTTCTGCAGCTGAGCCCCGGGGGCCTGCG
ACGCGCCGACGACCACGTAGGCCGGGCTGTGCAAAGCCCTCCGGACACCGGTCGCCGCCTGCCT
TGGAGCACAGGCTATGCCGAGGTCATCAATGCTGGCAAGAGCAGGCACAATGAGGACCAGGCTT
GCTGTGAGGTCGTGTATGTGGAAAGCCGGAGGAGCATTACAGGGGTCTCCAGGGAGCCTAGCCA
TAACCAGGGATTCAGCTTCTACTACTGGGGCCTGTTTGATGGGCACGCAGGTGGTGGAGCAGCT
GAAATGGCTTCCCGGCTCCTGCATCGCCACATCCGGGAACAGCTAAAGGATCTAGTAGAAATAC
TTCAGGACCCCTTGCCACCCCCGCTCTGTCTCCCATCCACTCCAGGAACCCCAGGAGTCTCTAG
CCCTTCACAGTTGGTTAGCCCTCAGTCCTGGTCCCCACAGAAGGAAGTGACCCATGACAGCCTG
GTAGTAGGGGCCATTGAGAACGCTTTCCAGCTCATGGATGAGCAGATGGCTCGGGAGCGGCGTG
GCCACCTAGTGGAAGGGGGCTGCTGTGCACTGGTTGTGGTATACCTGCTAGGCAAGATGTATGT
GGCTAATGCAGGTGACAGCAGGGCCATCATTGTCCGGAATGGTGAAATCATTCCAATGTCCCGG
GAGTTCACACCAGAGACAGAGCGTCAGCGTCTTCAGCTGCTTGGCTTTCTGAAACCAGAACTGC
TGGGCAGTGAGTTCACCCACCTTGAGTTTCCCCGAAGAGTTCAGCCCAAGGAACTAGGGCAGAG
GATGCTGTACAGGGACCAGAATATGACTGGCTGGGCCTACAAAAAGATTGAGTTGGAGGATCTC
AGGTTTCCTCTGGTCTGTGGAGAGGGCAAAAAGGTACGAGTGTATGATCTGACACAGTATGAGC
ACTGTCCAGATGATGTGCTGGTCCTGGGAACAGATGGCTTATGGGATGTGACCAATGACTCTGA
GGTAGCTGCCACTGTGGACAGGGTGCTGTCAACCTATGAGCCCAATGATCCCAGCAGGTATACA
GCTCTGGCCCAAGCTCTGGTCCTGGGGGCCCGGGGAATCCCCCGGGACCGTGGCTGGCGTCTCC
CAAACAACAAGCTGGGTTCCGGGGATGACATCTCGGTCTTCGTTATCCCCCTGGGAGGGCCAGG
CAGCAGTTACTCCTGATGGGCTCAGCCCCAGCCCTCTCACTGCCACCCCAGCATCTCCATTACC
ACTCTCCTCCAGCCCAAACATGGAAGTTGTGCCCCTGACTCTCAAGTGGCCATTTGACACAGGG
ATGCCCACTAGTTCCAAAATTACAACAACTGTCAAATAAAGCAGATGGACAAGCA

hide sequence

RefSeq Acc Id:

XM_063281640 ⟹ XP_063137710

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	194,967,122 - 194,972,228 (+)	NCBI

RefSeq Acc Id:

XM_063281641 ⟹ XP_063137711

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	194,966,854 - 194,970,613 (+)	NCBI

RefSeq Acc Id:

XM_063281642 ⟹ XP_063137712

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	194,967,120 - 194,970,613 (+)	NCBI

RefSeq Acc Id:

XR_005500269

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	194,966,862 - 194,971,483 (+)	NCBI
mRatBN7.2	2	192,278,597 - 192,283,145 (+)	NCBI

RefSeq Acc Id:

XR_005500270

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	194,966,862 - 194,971,241 (+)	NCBI
mRatBN7.2	2	192,278,597 - 192,282,884 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001005540	(Get FASTA)	NCBI Sequence Viewer
	XP_008759602	(Get FASTA)	NCBI Sequence Viewer
	XP_008759603	(Get FASTA)	NCBI Sequence Viewer
	XP_063137710	(Get FASTA)	NCBI Sequence Viewer
	XP_063137711	(Get FASTA)	NCBI Sequence Viewer
	XP_063137712	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH82053	(Get FASTA)	NCBI Sequence Viewer
	EDL85456	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016833
	ENSRNOP00000079348
	ENSRNOP00000082364
GenBank Protein	Q641Y6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001005540 ⟸ NM_001005540

- UniProtKB:

Q641Y6 (UniProtKB/Swiss-Prot), A6K3P4 (UniProtKB/TrEMBL), A0A8I5ZXT1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLNRVRSAVAHLVSSSGTSSQRSKSPDLPKAISPPPGALETPKSPGTKSGNEIPAPQKTAETPV
SFSRPTFLQLSPGGLRRADDHVGRAVQSPPDTGRRLPWSTGYAEVINAGKSRHNEDQACCEVVY
VESRRSITGVSREPSHNQGFSFYYWGLFDGHAGGGAAEMASRLLHRHIREQLKDLVEILQDPLP
PPLCLPSTPGTPGVSSPSQLVSPQSWSPQKEVTHDSLVVGAIENAFQLMDEQMARERRGHLVEG
GCCALVVVYLLGKMYVANAGDSRAIIVRNGEIIPMSREFTPETERQRLQLLGFLKPELLGSEFT
HLEFPRRVQPKELGQRMLYRDQNMTGWAYKKIELEDLRFPLVCGEGKKARVMATIGVTRGLGDH
NLKVCSSTLPIKPFLSCFPEVRVYDLTQYEHCPDDVLVLGTDGLWDVTNDSEVAATVDRVLSTY
EPNDPSRYTALAQALVLGARGIPRDRGWRLPNNKLGSGDDISVFVIPLGGPGSSYS

hide sequence

RefSeq Acc Id:	XP_008759602 ⟸ XM_008761380
- Peptide Label:	isoform X1
- UniProtKB:	A0A0H2UHJ9 (UniProtKB/TrEMBL), A0A8I5ZXT1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSNLQHDLNASFVPLPSYKRPFPSDTLAGQSRDAEKRQRRSKSPDLPKAISPPPGALETPKSPG TKSGNEIPAPQKTAETPVSFSRPTFLQLSPGGLRRADDHVGRAVQSPPDTGRRLPWSTGYAEVI NAGKSRHNEDQACCEVVYVESRRSITGVSREPSHNQGFSFYYWGLFDGHAGGGAAEMASRLLHR HIREQLKDLVEILQDPLPPPLCLPSTPGTPGVSSPSQLVSPQSWSPQKEVTHDSLVVGAIENAF QLMDEQMARERRGHLVEGGCCALVVVYLLGKMYVANAGDSRAIIVRNGEIIPMSREFTPETERQ RLQLLGFLKPELLGSEFTHLEFPRRVQPKELGQRMLYRDQNMTGWAYKKIELEDLRFPLVCGEG KKARVMATIGVTRGLGDHNLKVCSSTLPIKPFLSCFPEVRVYDLTQYEHCPDDVLVLGTDGLWD VTNDSEVAATVDRVLSTYEPNDPSRYTALAQALVLGARGIPRDRGWRLPNNKLGSGDDISVFVI PLGGPGSSYS hide sequence

RefSeq Acc Id:	XP_008759603 ⟸ XM_008761381
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZXT1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSNLQHDLNASFVPLPSYKRPFPSDTLAGQSRDAEKRQRRSKSPDLPKAISPPPGALETPKSPG TKSGNEIPAPQKTAETPVSFSRPTFLQLSPGGLRRADDHVGRAVQSPPDTGRRLPWSTGYAEVI NAGKSRHNEDQACCEVVYVESRRSITGVSREPSHNQGFSFYYWGLFDGHAGGGAAEMASRLLHR HIREQLKDLVEILQDPLPPPLCLPSTPGTPGVSSPSQLVSPQSWSPQKEVTHDSLVVGAIENAF QLMDEQMARERRGHLVEGGCCALVVVYLLGKMYVANAGDSRAIIVRNGEIIPMSREFTPETERQ RLQLLGFLKPELLGSEFTHLEFPRRVQPKELGQRMLYRDQNMTGWAYKKIELEDLRFPLVCGEG KKVRVYDLTQYEHCPDDVLVLGTDGLWDVTNDSEVAATVDRVLSTYEPNDPSRYTALAQALVLG ARGIPRDRGWRLPNNKLGSGDDISVFVIPLGGPGSSYS hide sequence

Ensembl Acc Id:

ENSRNOP00000016833 ⟸ ENSRNOT00000016833

Ensembl Acc Id:

ENSRNOP00000082364 ⟸ ENSRNOT00000118224

Ensembl Acc Id:

ENSRNOP00000079348 ⟸ ENSRNOT00000110381

RefSeq Acc Id:	XP_063137711 ⟸ XM_063281641
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063137712 ⟸ XM_063281642
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063137710 ⟸ XM_063281640
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZXT1 (UniProtKB/TrEMBL), A0A8I5ZMI9 (UniProtKB/TrEMBL)

Protein Domains

PPM-type phosphatase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q641Y6-F1-model_v2	AlphaFold	Q641Y6	1-504	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359104	AgrOrtholog
BioCyc Gene	G2FUF-51763	BioCyc
Ensembl Genes	ENSRNOG00000012481	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000016833	ENTREZGENE
	ENSRNOT00000110381	ENTREZGENE
	ENSRNOT00000118224	ENTREZGENE
Gene3D-CATH	3.60.40.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7132147	IMAGE-MGC_LOAD
InterPro	PP2C	UniProtKB/Swiss-Prot
	PPM-type_dom_sf	UniProtKB/Swiss-Prot
	PPM-type_phosphatase_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:295341	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:95205	IMAGE-MGC_LOAD
NCBI Gene	295341	ENTREZGENE
PANTHER	PROTEIN PHOSPHATASE 1J	UniProtKB/Swiss-Prot
	PTHR13832	UniProtKB/Swiss-Prot
Pfam	PP2C	UniProtKB/Swiss-Prot
PhenoGen	Ppm1j	PhenoGen
PROSITE	PPM_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000012481	RatGTEx
SMART	PP2Cc	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF81606	UniProtKB/Swiss-Prot
UniProt	A0A0H2UHJ9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZMI9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZXT1	ENTREZGENE, UniProtKB/TrEMBL
	A6K3P4	ENTREZGENE, UniProtKB/TrEMBL
	PPM1J_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-05-03	Ppm1j	protein phosphatase, Mg2+/Mn2+ dependent, 1J	Ppm1j	protein phosphatase 1J	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	Ppm1j	protein phosphatase 1J			Symbol and Name updated	1299863	APPROVED
2005-07-29	MGC95205	protein phosphatase 2C zeta			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	mouse homolog is expressed in testicular germ cells in the adult mouse	1359743
gene_physical_interaction	mouse homolog binds the ubiquitin-conjugating enzyme Ube2i/UBC9; association enhanced by the small ubiquitin-related modifier Sumo1	1359743

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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