Ppm1j (protein phosphatase, Mg2+/Mn2+ dependent 1J)

Gene: Ppm1j (protein phosphatase, Mg2+/Mn2+ dependent 1J) Chinchilla lanigera

Analyze

Symbol:

Ppm1j

Name:

protein phosphatase, Mg2+/Mn2+ dependent 1J

RGD ID:

9065069

Description:

ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); ASSOCIATED WITH amenorrhea (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 47 (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955435	16,121,206 - 16,129,296 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955435	16,124,087 - 16,129,296 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amenorrhea (ISO)

genetic disease (ISO)

hereditary spastic paraplegia 47 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

protein serine/threonine phosphatase activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Ppm1j
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955435	16,121,206 - 16,129,296 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955435	16,124,087 - 16,129,296 (-)	NCBI	ChiLan1.0	ChiLan1.0

PPM1J
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	112,709,998 - 112,715,332 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	112,709,994 - 112,715,332 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	113,252,620 - 113,257,954 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	113,054,139 - 113,059,473 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	111,483,060 - 111,488,379 (-)	NCBI		Celera
Cytogenetic Map	1	p13.2	NCBI
HuRef	1	111,111,007 - 111,116,341 (-)	NCBI		HuRef
CHM1_1	1	113,367,818 - 113,373,152 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	112,722,547 - 112,727,883 (-)	NCBI		T2T-CHM13v2.0

Ppm1j
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	104,688,322 - 104,693,334 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	104,688,372 - 104,693,334 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	104,780,952 - 104,786,023 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	104,781,056 - 104,786,018 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	104,583,974 - 104,588,936 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	104,909,112 - 104,914,004 (+)	NCBI		MGSCv36	mm8
Celera	3	106,976,413 - 106,981,377 (+)	NCBI		Celera
Cytogenetic Map	3	F2.2	NCBI
cM Map	3	45.85	NCBI

Ppm1j
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	194,966,854 - 194,972,228 (+)	NCBI		GRCr8
mRatBN7.2	2	192,278,597 - 192,283,883 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	192,278,517 - 192,283,882 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	199,873,234 - 199,878,245 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	197,745,513 - 197,750,529 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	192,562,458 - 192,567,473 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	207,263,307 - 207,268,601 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	207,262,934 - 207,268,609 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	226,682,751 - 226,687,765 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	200,039,684 - 200,044,698 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	200,002,437 - 200,007,451 (+)	NCBI
Celera	2	184,745,409 - 184,750,423 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

PPM1J
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	114,321,041 - 114,326,385 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	113,469,169 - 113,474,513 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	115,362,626 - 115,367,968 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	124,984,454 - 124,989,928 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	124,984,624 - 124,992,615 (+)	Ensembl	panpan1.1		panPan2

PPM1J
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	62,858,620 - 62,863,869 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	62,858,338 - 62,863,884 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	62,372,319 - 62,377,558 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	64,031,992 - 64,037,231 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	64,031,698 - 64,039,294 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	62,766,663 - 62,771,901 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	62,824,684 - 62,829,917 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	63,584,435 - 63,589,674 (+)	NCBI		UU_Cfam_GSD_1.0

Ppm1j
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	16,207,754 - 16,213,782 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936690	1,263,925 - 1,269,764 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936690	1,263,949 - 1,269,707 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PPM1J
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	107,723,437 - 107,728,919 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	107,723,427 - 107,728,919 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	117,792,201 - 117,797,397 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PPM1J
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	20,924,437 - 20,929,923 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	20,924,571 - 20,929,749 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	23,741,363 - 23,746,886 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ppm1j
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624772	8,491,030 - 8,496,156 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624772	8,491,020 - 8,496,183 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005388968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01033295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01004408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000007394 ⟹ ENSCLAP00000007280

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955435	16,121,206 - 16,129,296 (-)	Ensembl

RefSeq Acc Id:

XM_005388968 ⟹ XP_005389025

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955435	16,124,087 - 16,129,296 (-)	NCBI

Sequence:

show sequence

TCTGTGGGCGGGGCCTGGTGGGGGCGGGGCGGACGAGGGCGGGGCAGGGAGACAGCATGCTAAA
CCGGGTGCGCTCGGCCTTGGCGCACCTGGTGAGCTCCGGGGGCGCTCCGCCTCCGAGCCCCAAA
TCCTCGGACTTACCCAGCGCGACCGCGGAGCCCGCCGCCTCTCCAGAAGCGCCCAAAAGCCCTC
CAGCGAGGCCCGGGAGCAGGAGCGGGGCGCCCGCGAAGACCACAGAGGCTCGAGCGAGCTTCTG
CAGACCGACCTTCCTGCAGCTGAGCCCCGGGGGGCTGCGACGCGCCGACGACCACGCGGGCCGG
GCTGTGCAGAGCCCTCCGGACACGGGCCGCCGCCTGCCCTGGAGCACGGGCTACGCCGAGGTCA
TCAACGCTGGCAAGAGCCGGCACAATGAGGACCAGGCTTGCTGTGAAGTGGTGTATGTGGGAGG
CCGCAGGAGTGTTTCAGGGGCCCCTACAGAGCCTAGCCAAGGCCAGGGGCTCTGCTTCTACTAC
TGGGGCCTGTTTGATGGACATGCAGGTGGAGGAGCTGCTGAAATGGCCTCTAGGCTATTGCATC
GACACATCCAGGAGCAGCTAAAGGACCTAGTAGAAATACTCCAGGACCCCTCACCACCTCCTCT
TTGCCTCCCATCTACCCCTGGGACCCCAGGTTCCTCAGATCCCTGTCACTTGGTTGGTCCTCAG
CCCTGCTGGTCTTTGCAGAAGGAAGTAACCCATGACAGCCTGGTCATAGGGGCCATTGAGAATG
CCTTCCAGCTCATGGATGAGCAGATGGCCCAAGAGCGGCGTGGCCACCACATGGAGGGGGGCTG
CTGTGCCCTGGTTGTGGTGTACCTGCTAGGCAAGGTGTATGTGGCCAATGCGGGCGACAGCAGA
GCCATCATTGTCCGAAATGGTGAAGTCATTCCAATGTCCCGGGAGTTTACCCCGGAGACTGAGC
GCCAGCGTCTTCAGTTGCTTGGCTTTCTGAAACCAGAGCTGCTGGGCAGTGAATTCACCCACCT
CGAGTTTCCCCGAAGAATTCAGCCCAAGGAACTGGGCCAGAGGATGCTGTACAGGGACCAGAAC
ATGACTGGCTGGGCCTACAAAAGGATCGAGCTGGAGGATCTCAGGTTTCCTCTGGTGTGTGGGG
AGGGCAAAAAGGCCAGAGTGATGGCCACCATTGGGGTGACTCGGGGACTAGGAGACCACAACCT
TAAGGTCTGCGGTTCTACCTTGCCCATCAAGCCCTTCCTCTCCTGCTTCCCTGAGGTGCGCGTG
TACGACCTGACACAGTATGAGCACTGCCCAGATGACGTGCTAGTGCTGGGAACAGATGGGCTGT
GGGACGTCACCAGTGACTGTGAGGTGGCCAGCACAGTGGACAGGGTGCTGTCCGCCTATGAGCC
CAACGACCCGAGCAGGTACACAGCTCTGGCCCAAGCTCTGGTCCTGGGGGCCCGGGGCACCCCA
CGGGACCGAGGCTGGCGTCTTCCCAACAACAAGCTGGGTTCCGGGGATGACATCTCGGTCTTCG
TCATCCCCCTGGGAGGGCCAGGCAGTTACTCCTGAGGGGCTCAGCTGCAGCTGTCCCACCGCCT
TCCCCTTTCCCAGCCCAAATTCTGAACTTGTCTCCTTGACCCTTCCTTAGTGACAATCTAACAG
ACAGGGGGAGGTCAGTAGAACCAGAATTATAGCAATTGGCAAATAAACCAGATGGATAAAGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005389025	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000007280
	ENSCLAP00000007280.1

RefSeq Acc Id:

XP_005389025 ⟸ XM_005388968

- UniProtKB:

A0A8C2UXM8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLNRVRSALAHLVSSGGAPPPSPKSSDLPSATAEPAASPEAPKSPPARPGSRSGAPAKTTEARA
SFCRPTFLQLSPGGLRRADDHAGRAVQSPPDTGRRLPWSTGYAEVINAGKSRHNEDQACCEVVY
VGGRRSVSGAPTEPSQGQGLCFYYWGLFDGHAGGGAAEMASRLLHRHIQEQLKDLVEILQDPSP
PPLCLPSTPGTPGSSDPCHLVGPQPCWSLQKEVTHDSLVIGAIENAFQLMDEQMAQERRGHHME
GGCCALVVVYLLGKVYVANAGDSRAIIVRNGEVIPMSREFTPETERQRLQLLGFLKPELLGSEF
THLEFPRRIQPKELGQRMLYRDQNMTGWAYKRIELEDLRFPLVCGEGKKARVMATIGVTRGLGD
HNLKVCGSTLPIKPFLSCFPEVRVYDLTQYEHCPDDVLVLGTDGLWDVTSDCEVASTVDRVLSA
YEPNDPSRYTALAQALVLGARGTPRDRGWRLPNNKLGSGDDISVFVIPLGGPGSYS

hide sequence

RefSeq Acc Id:

ENSCLAP00000007280 ⟸ ENSCLAT00000007394

Protein Domains

PPM-type phosphatase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000005118	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000007394	ENTREZGENE
	ENSCLAT00000007394.1	UniProtKB/TrEMBL
Gene3D-CATH	3.60.40.10	UniProtKB/TrEMBL
InterPro	PP2C	UniProtKB/TrEMBL
	PPM-type_dom_sf	UniProtKB/TrEMBL
	PPM-type_phosphatase_dom	UniProtKB/TrEMBL
NCBI Gene	Ppm1j	ENTREZGENE
PANTHER	PROTEIN PHOSPHATASE 1J	UniProtKB/TrEMBL
	PTHR13832	UniProtKB/TrEMBL
Pfam	PP2C	UniProtKB/TrEMBL
PROSITE	PPM_2	UniProtKB/TrEMBL
SMART	PP2Cc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF81606	UniProtKB/TrEMBL
UniProt	A0A8C2UXM8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	Ppm1j	protein phosphatase, Mg2+/Mn2+ dependent 1J		protein phosphatase, Mg2+/Mn2+ dependent, 1J	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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