Or2l13 (olfactory receptor family 2 subfamily L member 13) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Or2l13 (olfactory receptor family 2 subfamily L member 13) Rattus norvegicus
Analyze
Symbol: Or2l13
Name: olfactory receptor family 2 subfamily L member 13
RGD ID: 1333362
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human OR2L13 (olfactory receptor family 2 subfamily L member 13); INTERACTS WITH bisphenol A; 1,2-dimethylhydrazine (ortholog); 2,3,7,8-tetrachlorodibenzodioxine (ortholog).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 1569; olfactory receptor gene Olr1569; olfactory receptor Olr1569; Olr1569
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81194,904,565 - 94,905,503 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1194,904,565 - 94,905,503 (-)EnsemblGRCr8
mRatBN7.21181,400,197 - 81,401,135 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,399,173 - 81,404,284 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1190,130,467 - 90,131,405 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01182,791,663 - 82,792,601 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01181,844,950 - 81,845,888 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01185,313,090 - 85,314,028 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1185,313,090 - 85,314,028 (-)Ensemblrn6Rnor6.0
Rnor_5.01188,370,583 - 88,371,521 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41183,668,694 - 83,669,632 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1180,228,589 - 80,229,527 (-)NCBICelera
RGSC_v3.11183,726,614 - 83,727,553 (-)NCBI
Cytogenetic Map11q23NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Or2l13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81194,904,565 - 94,905,503 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1194,904,565 - 94,905,503 (-)EnsemblGRCr8
mRatBN7.21181,400,197 - 81,401,135 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,399,173 - 81,404,284 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1190,130,467 - 90,131,405 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01182,791,663 - 82,792,601 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01181,844,950 - 81,845,888 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01185,313,090 - 85,314,028 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1185,313,090 - 85,314,028 (-)Ensemblrn6Rnor6.0
Rnor_5.01188,370,583 - 88,371,521 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41183,668,694 - 83,669,632 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1180,228,589 - 80,229,527 (-)NCBICelera
RGSC_v3.11183,726,614 - 83,727,553 (-)NCBI
Cytogenetic Map11q23NCBI
OR2L13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381247,937,177 - 248,101,163 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1248,095,184 - 248,101,163 (+)Ensemblhg38GRCh38
GRCh371248,100,479 - 248,264,465 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361246,167,116 - 246,330,847 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341244,426,533 - 244,590,264NCBI
Celera1221,386,063 - 221,549,651 (+)NCBICelera
Cytogenetic Map1q44NCBI
HuRef1218,484,088 - 218,648,016 (+)NCBIHuRef
CHM1_11249,372,807 - 249,536,635 (+)NCBICHM1_1
T2T-CHM13v2.01247,363,114 - 247,527,286 (+)NCBIT2T-CHM13v2.0
Or2l13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391619,305,590 - 19,306,528 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1619,302,444 - 19,308,632 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381619,486,840 - 19,487,778 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1619,483,694 - 19,489,882 (+)Ensemblmm10GRCm38
MGSCv371619,486,933 - 19,487,871 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361619,400,403 - 19,401,341 (+)NCBIMGSCv36mm8
Celera1620,056,301 - 20,057,239 (+)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1612.07NCBI
LOC100989812
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21940,398 - 1,115,164 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111,216,574 - 1,393,251 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01223,571,149 - 224,063,599 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11229,019,506 - 229,191,809 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1229,190,146 - 229,191,084 (+)EnsemblpanPan2panpan1.1
LOC482230
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1142,180,549 - 2,181,511 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha141,817,350 - 1,825,794 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0141,899,520 - 1,907,968 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl141,907,030 - 1,907,968 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1142,084,066 - 2,092,508 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0141,876,607 - 1,885,045 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0141,858,764 - 1,867,210 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC100523426
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1254,975,111 - 54,976,049 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2255,656,567 - 55,657,505 (+)NCBISscrofa10.2Sscrofa10.2susScr3

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:93
Count of miRNA genes:82
Interacting mature miRNAs:86
Transcripts:ENSRNOT00000057990
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)117330848796070872Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)115892833699753367Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)117961851999753367Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)119046178196556255Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)117385089499753367Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)118295102896351019Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)115775483796071021Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)116796218499753367Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)116859932196497754Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)116985594399753367Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)117330831599753367Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)115827236396350770Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
2 1 1 8 5 6 1 50 1 74 54 3 5 16 5 5

Sequence


Ensembl Acc Id: ENSRNOT00000057990   ⟹   ENSRNOP00000054800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1181,399,173 - 81,404,284 (-)Ensembl
Rnor_6.0 Ensembl1185,313,090 - 85,314,028 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000171245   ⟹   ENSRNOP00000105452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1194,904,565 - 94,905,503 (-)Ensembl
RefSeq Acc Id: NM_001000042   ⟹   NP_001000042
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,904,565 - 94,905,503 (-)NCBI
mRatBN7.21181,400,197 - 81,401,135 (-)NCBI
Rnor_6.01185,313,090 - 85,314,028 (-)NCBI
Rnor_5.01188,370,583 - 88,371,521 (-)NCBI
RGSC_v3.41183,668,694 - 83,669,632 (-)RGD
Celera1180,228,589 - 80,229,527 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001000042 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL77976 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000105452
  ENSRNOP00000105452.1
RefSeq Acc Id: NP_001000042   ⟸   NM_001000042
- UniProtKB: D3ZT66 (UniProtKB/TrEMBL),   A6JSD1 (UniProtKB/TrEMBL),   M0R908 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000054800   ⟸   ENSRNOT00000057990
Ensembl Acc Id: ENSRNOP00000105452   ⟸   ENSRNOT00000171245
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZT66-F1-model_v2 AlphaFold D3ZT66 1-312 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1333362 AgrOrtholog
BioCyc Gene G2FUF-20691 BioCyc
Ensembl Genes ENSRNOG00000050293 Ensembl
  ENSRNOG00000063137 Ensembl
  ENSRNOG00000074329 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000171245 ENTREZGENE
  ENSRNOT00000171245.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report rno:287969 UniProtKB/TrEMBL
NCBI Gene 287969 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or2l13 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000050293 RatGTEx
  ENSRNOG00000063137 RatGTEx
  ENSRNOG00000074329 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0ABK0L664_RAT UniProtKB/TrEMBL
  A6JSD1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZT66 ENTREZGENE
  M0R908 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or2l13  olfactory receptor family 2 subfamily L member 13  Olr1569  olfactory receptor 1569  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr1569  olfactory receptor 1569   Olr1569_predicted  olfactory receptor 1569 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1569_predicted  olfactory receptor 1569 (predicted)      Symbol and Name status set to approved 70820 APPROVED