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Gene: Med29 (mediator complex subunit 29) Rattus norvegicus

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Symbol:

Med29

Name:

mediator complex subunit 29

RGD ID:

1311009

Description:

Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Orthologous to human MED29 (mediator complex subunit 29); PARTICIPATES IN RNA polymerase II transcription pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; finasteride; flutamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

intersex-like; intersex-like (Drosophila); Ixl; LOC292751; mediator of RNA polymerase II transcription subunit 29; RGD1311009; similar to RIKEN cDNA 2810405O22

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MED29 (mediator complex subunit 29)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Med29 (mediator complex subunit 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Med29 (mediator complex subunit 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MED29 (mediator complex subunit 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MED29 (mediator complex subunit 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Med29 (mediator complex subunit 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MED29 (mediator complex subunit 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MED29 (mediator complex subunit 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Med29 (mediator complex subunit 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Med29 (mediator complex subunit 29)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	NUBP2 (NUBP iron-sulfur cluster assembly factor 2, cytosolic)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	MED29 (mediator complex subunit 29)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Med29 (mediator complex subunit 29)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	med29 (mediator complex subunit 29)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	ix	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	med29	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	92,805,505 - 92,810,908 (-)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	1	83,677,961 - 83,683,365 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	83,677,961 - 83,683,365 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	89,088,022 - 89,093,368 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	97,546,508 - 97,551,874 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	90,843,892 - 90,849,238 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	85,368,288 - 85,373,691 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	85,368,288 - 85,373,099 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	86,583,618 - 86,589,021 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	83,495,520 - 83,500,924 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	78,074,230 - 78,079,633 (-)	NCBI		Celera
RGSC_v3.1	1	83,574,224 - 83,579,035 (-)	NCBI
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-alpha-phellandrene (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-phellandrene (ISO)

alpha-pinene (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol F (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

diallyl trisulfide (ISO)

diarsenic trioxide (ISO)

finasteride (EXP)

flutamide (EXP)

gentamycin (EXP)

glafenine (EXP)

leflunomide (EXP)

metformin (ISO)

methamphetamine (EXP)

methidathion (ISO)

nimesulide (EXP)

nitrates (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (ISO)

resveratrol (EXP)

tetrachloroethene (ISO)

thapsigargin (ISO)

tributylstannane (EXP)

trovafloxacin (ISO)

tunicamycin (ISO)

vincristine (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

core mediator complex (ISO)

mediator complex (ISO)

nucleoplasm (ISO)

nucleus (ISO)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase II transcription pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	The Mediator complex and transcription regulation.	Poss ZC, etal., Crit Rev Biochem Mol Biol. 2013 Nov-Dec;48(6):575-608. doi: 10.3109/10409238.2013.840259. Epub 2013 Oct 3.
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:14638676

Genomics

Comparative Map Data

Med29
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	92,805,505 - 92,810,908 (-)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	1	83,677,961 - 83,683,365 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	83,677,961 - 83,683,365 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	89,088,022 - 89,093,368 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	97,546,508 - 97,551,874 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	90,843,892 - 90,849,238 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	85,368,288 - 85,373,691 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	85,368,288 - 85,373,099 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	86,583,618 - 86,589,021 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	83,495,520 - 83,500,924 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	78,074,230 - 78,079,633 (-)	NCBI		Celera
RGSC_v3.1	1	83,574,224 - 83,579,035 (-)	NCBI
Cytogenetic Map	1	q21	NCBI

MED29
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	39,391,378 - 39,400,641 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	39,391,303 - 39,400,641 (+)	Ensembl			hg38	GRCh38
GRCh37	19	39,882,018 - 39,891,281 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	44,573,803 - 44,583,043 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	36,683,645 - 36,692,896 (+)	NCBI		Celera
Cytogenetic Map	19	q13.2	NCBI
HuRef	19	36,328,665 - 36,337,893 (+)	NCBI		HuRef
CHM1_1	19	39,882,695 - 39,891,907 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	42,195,658 - 42,204,924 (+)	NCBI		T2T-CHM13v2.0

Med29
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	28,084,667 - 28,092,126 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	28,085,571 - 28,092,133 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	28,385,247 - 28,392,690 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	28,386,146 - 28,392,708 (-)	Ensembl			mm10	GRCm38
MGSCv37	7	29,170,266 - 29,177,709 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	28,094,906 - 28,101,433 (-)	NCBI		MGSCv36	mm8
Celera	7	22,946,831 - 22,954,271 (-)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	16.72	NCBI

Med29
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	162,487 - 166,286 (-)	Ensembl
ChiLan1.0	NW_004955468	162,487 - 166,286 (-)	NCBI	ChiLan1.0	ChiLan1.0

MED29
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	45,686,800 - 45,704,872 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	47,557,381 - 47,566,594 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	36,489,459 - 36,498,838 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	45,037,266 - 45,046,717 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	45,037,228 - 45,046,717 (+)	Ensembl			panPan2	panpan1.1

MED29
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	113,823,875 - 113,827,695 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	113,823,877 - 113,827,718 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	113,227,253 - 113,231,702 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	114,424,506 - 114,428,967 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	114,424,506 - 114,429,090 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	113,983,230 - 113,987,682 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	113,616,004 - 113,620,460 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	114,611,098 - 114,615,558 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Med29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	13,813,032 - 13,816,513 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936661	2,241,215 - 2,244,569 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936661	2,241,182 - 2,244,582 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MED29
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	6	48,051,985 - 48,059,035 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	43,903,274 - 43,908,120 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MED29
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	33,996,745 - 34,005,208 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	33,996,843 - 34,002,405 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666073	12,017,178 - 12,026,448 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Med29
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	12,725,344 - 12,728,710 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624794	12,724,839 - 12,732,160 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Med29
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	167,603,902 - 167,608,370 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Med29
34 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	284
Count of miRNA genes:	189
Interacting mature miRNAs:	218
Transcripts:	ENSRNOT00000026720
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	51940904	101229020	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	87889942	132889942	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	87785026	142582336	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	83019780	128019780	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	81269860	99645535	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	84107164	115183752	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	91302413	136302413	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	65405637	96805205	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	86622262	131622262	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	58769992	103769992	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)	1	92683681	137683681	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	86993904	131993904	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	87558587	132558587	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	92683681	137683681	Rat

Markers in Region

RH139186

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	83,677,960 - 83,678,100 (-)	MAPPER	mRatBN7.2
Rnor_6.0	1	85,373,552 - 85,373,691	NCBI	Rnor6.0
Rnor_5.0	1	86,588,882 - 86,589,021	UniSTS	Rnor5.0
RGSC_v3.4	1	83,495,520 - 83,495,659	UniSTS	RGSC3.4
Celera	1	78,074,230 - 78,074,369	UniSTS
RH 3.4 Map	1	826.5	UniSTS
Cytogenetic Map	1	q21	UniSTS

RH141510

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	334,811 - 334,986 (+)	MAPPER	mRatBN7.2
mRatBN7.2	1	83,678,622 - 83,678,805 (-)	MAPPER	mRatBN7.2
Rnor_6.0	1	85,372,847 - 85,373,029	NCBI	Rnor6.0
Rnor_6.0	19	542,382 - 542,556	NCBI	Rnor6.0
Rnor_5.0	19	537,333 - 537,507	UniSTS	Rnor5.0
Rnor_5.0	1	86,588,177 - 86,588,359	UniSTS	Rnor5.0
RGSC_v3.4	1	83,496,182 - 83,496,364	UniSTS	RGSC3.4
RGSC_v3.4	19	252,275 - 252,449	UniSTS	RGSC3.4
Celera	19	331,151 - 331,325	UniSTS
Celera	1	78,074,892 - 78,075,074	UniSTS
Cytogenetic Map	19	p14	UniSTS
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	91	59	6	355	191	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC110862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000026720 ⟹ ENSRNOP00000026721

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	83,677,961 - 83,683,365 (-)	Ensembl
Rnor_6.0 Ensembl	1	85,368,288 - 85,373,099 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093615

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	85,372,701 - 85,373,099 (+)	Ensembl

RefSeq Acc Id:

NM_001106237 ⟹ NP_001099707

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	92,805,505 - 92,810,908 (-)	NCBI
mRatBN7.2	1	83,677,961 - 83,683,365 (-)	NCBI
Rnor_6.0	1	85,368,288 - 85,373,691 (+)	NCBI
Rnor_5.0	1	86,583,618 - 86,589,021 (+)	NCBI
RGSC_v3.4	1	83,495,520 - 83,500,924 (-)	RGD
Celera	1	78,074,230 - 78,079,633 (-)	RGD

Sequence:

show sequence

AGCCACCGGAGCAGACGCGCTTGTGACGTGTTTCCGGTGTTCTAGCGGAGGAAAATGGCTGCGC
CCCAGCCACAGGCTGCGGCGGTTTCCTCTGCTGCCGGTGTGTCTGGTCCGGGTTCTGCTGGTGG
TCCTGGTCCCCAGCAACAGCCGCAACCAACCCAACTGGTGGGTGCTGCCCAGAGCGGGCTCCTG
CAGCAGCAGCAGCAGGACTTCGATCCTGTGCAGCGCTACAAGATGCTCATCCCGCAATTGAAGG
AGAGTCTCCAGACTTTGATGAAAGTTGCTGCCCAGAACCTGATTCAGAACACTAACATTGACAA
CGGACAGAAAAGCAGTGACGGACCCATACAGCGCTTTGACAAGTGTCTGGAGGAGTTTTACGCA
CTCTGTGATCAGCTGGAACTCTGCTTGCGTCTGGCCCACGAGTGCCTCTCACAGAGCTGTGACA
GCGCCAAGCACTCTCCAACACTGGTACCCACAGCCACAAAGCCAGATGCAGTGCAGCCAGACAG
CCTGCCCTACCCGCAGTACCTGGCTGTCATCAAAGCTCAGATTACCTGTGCCAAAGACATTCAC
ACTGCCCTGCTGGACTGTGCCAACAAGGTCACTGGCAAGACTACTGCACCCTCGACTGGCCCTG
GAGGCAGCCTCTGAGGTCTTGGTGGAGGGAGGGGCAGAGAATGAAGTCTGGCCTGAGGGAAAAC
ATGGTTCCTGTTACTGATTTATTTGTCCTGCCACAGTAAGTAGCTGGAACCAGCAGGGGGCAGC
AGAGACTTGCAGGCAACACAGGCCTCAACCCCACCTCTGTTGCCTCCACCCACTCTGCTCCCTG
ATGGAGGGTGGACCCCCCACACGCACACTCCTAGCTGCTGATTACCAGTGTTCTGAAGACTTCC
CATCTCCCACCTGGCCCTGGGCGCTGACTGGGCGGTTTAAACCTTCCTCAGTCTGTCCCAGTGT
ATGGACTCTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCCATTTTTCTGCTCCCGTCCTCCCTT
TCTCTACCAGTCCGCTTTTGTTGCCCCCAGTGCCTAACTGGGATCCTATGTATATAAGAGGAGC
AAAATGCCCGGGTTGCCTGGGGCTACAGGAAGGCACTTTCTGGCTCACAAATGTGCATGAATGT
AGGCCCTGACCTCAGCACACACACAACCTAGGAGCAGTTTGGGTCCACATTGGACCCTGCGTCA
GCAGGGCTCTCTAGCAGGGGGAGGTGTGGGGGCATTGTGCAATGTGTGGGGAGGCCTGCTCAAC
AGGACTCCTTGGTCTCA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001099707	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM07896	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001099707 ⟸ NM_001106237

- UniProtKB:

D4A108 (UniProtKB/TrEMBL), A6J9I8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAPQPQAAAVSSAAGVSGPGSAGGPGPQQQPQPTQLVGAAQSGLLQQQQQDFDPVQRYKMLIP
QLKESLQTLMKVAAQNLIQNTNIDNGQKSSDGPIQRFDKCLEEFYALCDQLELCLRLAHECLSQ
SCDSAKHSPTLVPTATKPDAVQPDSLPYPQYLAVIKAQITCAKDIHTALLDCANKVTGKTTAPS
TGPGGSL

hide sequence

Ensembl Acc Id:

ENSRNOP00000026721 ⟸ ENSRNOT00000026720

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A108-F1-model_v2	AlphaFold	D4A108	1-199	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689870

Promoter ID:

EPDNEW_R395

Type:

initiation region

Name:

Med29_1

Description:

mediator complex subunit 29

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	85,368,331 - 85,368,391	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311009	AgrOrtholog
BioCyc Gene	G2FUF-60244	BioCyc
Ensembl Genes	ENSRNOG00000019702	Ensembl
InterPro	Mediator_Med29_met	UniProtKB/TrEMBL
KEGG Report	rno:292751	UniProtKB/TrEMBL
NCBI Gene	292751	ENTREZGENE
PANTHER	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 29	UniProtKB/TrEMBL
	PTHR28314	UniProtKB/TrEMBL
Pfam	Med29	UniProtKB/TrEMBL
PhenoGen	Med29	PhenoGen
RatGTEx	ENSRNOG00000019702	RatGTEx
UniProt	A6J9I8	ENTREZGENE, UniProtKB/TrEMBL
	D4A108	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Med29	mediator complex subunit 29	Ixl_predicted	intersex-like (Drosophila) (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Ixl_predicted	intersex-like (Drosophila) (predicted)	RGD1311009_predicted	similar to RIKEN cDNA 2810405O22 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1311009_predicted	similar to RIKEN cDNA 2810405O22 (predicted)	LOC292751_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC292751_predicted	similar to RIKEN cDNA 2810405O22 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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