Chchd4 (coiled-coil-helix-coiled-coil-helix domain containing 4) - Rat Genome Database

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Gene: Chchd4 (coiled-coil-helix-coiled-coil-helix domain containing 4) Rattus norvegicus
Analyze
Symbol: Chchd4 (Ensembl: Chchd4-ps1)
Name: coiled-coil-helix-coiled-coil-helix domain containing 4 (Ensembl:coiled-coil-helix-coiled-coil-helix domain containing 4, pseudogene 1)
RGD ID: 1310746
Description: Predicted to enable protein-disulfide reductase activity. Predicted to be involved in mitochondrial respiratory chain complex assembly; protein folding; and protein import into mitochondrial intermembrane space. Predicted to act upstream of or within several processes, including cellular response to leukemia inhibitory factor; mitochondrial DNA repair; and regulation of protein export from nucleus. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial intermembrane space. Orthologous to human CHCHD4 (coiled-coil-helix-coiled-coil-helix domain containing 4); PARTICIPATES IN intermembrane space assembly pathway of mitochondrial protein import; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: coiled-coil-helix-coiled-coil-helix domain-containing protein 4; LOC312559; MGC109542; mitochondrial intermembrane space import and assembly protein 40
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Chchd4-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84125,525,428 - 125,534,562 (-)NCBIGRCr8
mRatBN7.24123,968,264 - 123,977,398 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4123,968,265 - 123,977,414 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1227,987,570 - 227,988,844 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4129,434,271 - 129,443,386 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04125,208,699 - 125,217,814 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04123,833,253 - 123,842,368 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04123,108,924 - 123,118,186 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4123,108,925 - 123,118,186 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04187,427,514 - 187,436,776 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44125,647,269 - 125,656,403 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14125,891,750 - 125,900,884 (-)NCBI
Celera4112,887,725 - 112,896,859 (-)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
mitochondrial intermembrane space  (IBA,IEA,ISO,ISS)
mitochondrion  (ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. The MIA pathway: a key regulator of mitochondrial oxidative protein folding and biogenesis. Mordas A and Tokatlidis K, Acc Chem Res. 2015 Aug 18;48(8):2191-9. doi: 10.1021/acs.accounts.5b00150. Epub 2015 Jul 27.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:16185709   PMID:18614015   PMID:19182799   PMID:20439489   PMID:21059946   PMID:23676665   PMID:24101517   PMID:26004228   PMID:26387864   PMID:37438854  


Genomics

Comparative Map Data
Chchd4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84125,525,428 - 125,534,562 (-)NCBIGRCr8
mRatBN7.24123,968,264 - 123,977,398 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4123,968,265 - 123,977,414 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1227,987,570 - 227,988,844 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4129,434,271 - 129,443,386 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04125,208,699 - 125,217,814 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04123,833,253 - 123,842,368 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04123,108,924 - 123,118,186 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4123,108,925 - 123,118,186 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04187,427,514 - 187,436,776 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44125,647,269 - 125,656,403 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14125,891,750 - 125,900,884 (-)NCBI
Celera4112,887,725 - 112,896,859 (-)NCBICelera
Cytogenetic Map4q34NCBI
CHCHD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38314,112,077 - 14,124,870 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl314,112,077 - 14,124,870 (-)EnsemblGRCh38hg38GRCh38
GRCh37314,153,577 - 14,166,370 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36314,128,578 - 14,141,372 (-)NCBINCBI36Build 36hg18NCBI36
Build 34314,128,583 - 14,141,323NCBI
Celera314,091,884 - 14,104,678 (-)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef314,088,553 - 14,101,347 (-)NCBIHuRef
CHM1_1314,103,963 - 14,116,757 (-)NCBICHM1_1
T2T-CHM13v2.0314,114,022 - 14,126,815 (-)NCBIT2T-CHM13v2.0
Chchd4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39691,441,258 - 91,450,405 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl691,439,154 - 91,450,528 (-)EnsemblGRCm39 Ensembl
GRCm38691,464,276 - 91,473,423 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl691,462,172 - 91,473,546 (-)EnsemblGRCm38mm10GRCm38
MGSCv37691,414,270 - 91,423,417 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36691,429,780 - 91,438,927 (-)NCBIMGSCv36mm8
Celera693,357,108 - 93,366,702 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map640.53NCBI
Chchd4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542916,912,208 - 16,921,157 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542916,911,392 - 16,921,353 (-)NCBIChiLan1.0ChiLan1.0
CHCHD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2214,089,669 - 14,102,395 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1314,094,431 - 14,107,161 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0314,030,410 - 14,043,233 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1314,370,854 - 14,383,660 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl314,370,854 - 14,383,660 (-)Ensemblpanpan1.1panPan2
CHCHD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1204,268,670 - 4,281,624 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl204,267,683 - 4,281,549 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha204,306,467 - 4,319,538 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0204,289,982 - 4,302,985 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl204,289,990 - 4,302,989 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1204,009,488 - 4,022,490 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0204,331,824 - 4,344,777 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0204,296,145 - 4,309,187 (-)NCBIUU_Cfam_GSD_1.0
Chchd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494218,813,433 - 18,817,243 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493660293,123 - 95,810 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493660293,126 - 99,695 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHCHD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1370,417,326 - 70,428,922 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11370,417,326 - 70,428,923 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21377,875,900 - 77,887,497 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHCHD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12250,055,130 - 50,067,917 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2250,054,007 - 50,067,940 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041116,427,703 - 116,440,514 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chchd4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248721,481,319 - 1,488,097 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248721,481,149 - 1,488,992 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Chchd4
46 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:382
Count of miRNA genes:214
Interacting mature miRNAs:247
Transcripts:ENSRNOT00000038096
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4120260281147278687Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4120926564148090731Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4119463257147278687Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 36 20 19 20 7 10 74 34 40 6 7
Low 1 13 28 28 1 28 1 1 11 10 8 6 1
Below cutoff 1 3 3 3 1 3 3 2 4 2

Sequence


Ensembl Acc Id: ENSRNOT00000038096   ⟹   ENSRNOP00000038359
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4123,968,269 - 123,977,414 (-)Ensembl
Rnor_6.0 Ensembl4123,108,925 - 123,118,186 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116242   ⟹   ENSRNOP00000094363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1227,987,570 - 227,988,844 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116715   ⟹   ENSRNOP00000098005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4123,968,265 - 123,971,964 (-)Ensembl
RefSeq Acc Id: NM_001013431   ⟹   NP_001013449
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84125,525,428 - 125,534,562 (-)NCBI
mRatBN7.24123,968,264 - 123,977,398 (-)NCBI
Rnor_6.04123,108,924 - 123,118,186 (-)NCBI
Rnor_5.04187,427,514 - 187,436,776 (+)NCBI
RGSC_v3.44125,647,269 - 125,656,403 (-)RGD
Celera4112,887,725 - 112,896,859 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001013449 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH91407 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000038359.4
  ENSRNOP00000094363.1
  ENSRNOP00000098005.1
  ENSRNOP00055005186
  ENSRNOP00055045799
  ENSRNOP00060039383
  ENSRNOP00060044413
  ENSRNOP00065034581
  ENSRNOP00065043932
GenBank Protein Q5BJN5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001013449   ⟸   NM_001013431
- UniProtKB: Q5BJN5 (UniProtKB/Swiss-Prot),   A0A8I6AU06 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000038359   ⟸   ENSRNOT00000038096
Ensembl Acc Id: ENSRNOP00000098005   ⟸   ENSRNOT00000116715
Ensembl Acc Id: ENSRNOP00000094363   ⟸   ENSRNOT00000116242
Protein Domains
CHCH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5BJN5-F1-model_v2 AlphaFold Q5BJN5 1-139 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693250
Promoter ID:EPDNEW_R3774
Type:initiation region
Name:LOC100361898_1
Description:coiled-coil-helix-coiled-coil-helix domain containing 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04123,118,195 - 123,118,255EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310746 AgrOrtholog
BioCyc Gene G2FUF-43722 BioCyc
Ensembl Genes ENSRNOG00000022466 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00000069157 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00055004336 UniProtKB/Swiss-Prot
  ENSRNOG00055032119 UniProtKB/Swiss-Prot
  ENSRNOG00060027251 UniProtKB/Swiss-Prot
  ENSRNOG00060030779 UniProtKB/Swiss-Prot
  ENSRNOG00065024628 UniProtKB/Swiss-Prot
  ENSRNOG00065031009 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000038096.5 UniProtKB/Swiss-Prot
  ENSRNOT00000116242.1 UniProtKB/Swiss-Prot
  ENSRNOT00000116715.1 UniProtKB/TrEMBL
  ENSRNOT00055006889 UniProtKB/Swiss-Prot
  ENSRNOT00055055511 UniProtKB/Swiss-Prot
  ENSRNOT00060047313 UniProtKB/Swiss-Prot
  ENSRNOT00060053459 UniProtKB/Swiss-Prot
  ENSRNOT00065042280 UniProtKB/Swiss-Prot
  ENSRNOT00065053444 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.287.2900 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7324948 IMAGE-MGC_LOAD
InterPro CHCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CHCHD4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:312559 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109542 IMAGE-MGC_LOAD
NCBI Gene 312559 ENTREZGENE
PANTHER MITOCHONDRIAL INTERMEMBRANE SPACE IMPORT AND ASSEMBLY PROTEIN 40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21622 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CHCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Chchd4 PhenoGen
PROSITE CHCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000022466 RatGTEx
  ENSRNOG00000069157 RatGTEx
  ENSRNOG00055004336 RatGTEx
  ENSRNOG00055032119 RatGTEx
  ENSRNOG00060027251 RatGTEx
  ENSRNOG00060030779 RatGTEx
  ENSRNOG00065024628 RatGTEx
  ENSRNOG00065031009 RatGTEx
UniProt A0A8I6AU06 ENTREZGENE, UniProtKB/TrEMBL
  MIA40_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Chchd4  coiled-coil-helix-coiled-coil-helix domain containing 4  Chchd4_predicted  coiled-coil-helix-coiled-coil-helix domain containing 4 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Chchd4_predicted  coiled-coil-helix-coiled-coil-helix domain containing 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED