Cep135 (centrosomal protein 135) - Rat Genome Database

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Gene: Cep135 (centrosomal protein 135) Rattus norvegicus
Analyze
Symbol: Cep135
Name: centrosomal protein 135
RGD ID: 1310726
Description: Predicted to enable microtubule binding activity and protein homodimerization activity. Predicted to be involved in centrosome cycle; positive regulation of establishment of protein localization; and positive regulation of non-motile cilium assembly. Predicted to be located in cytoplasm. Predicted to be active in centriole and centrosome. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 8. Orthologous to human CEP135 (centrosomal protein 135); INTERACTS WITH acrylamide; bisphenol A; glyphosate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: centrosomal protein 135kDa; centrosomal protein of 135 kDa; LOC305288; RGD1310726; similar to KIAA0635 gene product
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81431,884,774 - 31,950,050 (-)NCBIGRCr8
mRatBN7.21431,530,538 - 31,595,812 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1431,531,482 - 31,595,772 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1431,907,145 - 31,972,267 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01433,215,037 - 33,280,157 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01431,700,160 - 31,765,278 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01434,052,168 - 34,115,763 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1434,051,003 - 34,115,273 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01433,832,589 - 33,895,857 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41433,804,975 - 33,861,257 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11433,804,974 - 33,861,257 (-)NCBI
Celera1430,846,207 - 30,911,495 (-)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centriole  (IBA,ISO)
centrosome  (IBA,ISO)
cytoplasm  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17681131   PMID:18851962   PMID:21399614   PMID:21499258   PMID:23509069   PMID:25002582   PMID:26545777   PMID:27185865  


Genomics

Comparative Map Data
Cep135
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81431,884,774 - 31,950,050 (-)NCBIGRCr8
mRatBN7.21431,530,538 - 31,595,812 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1431,531,482 - 31,595,772 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1431,907,145 - 31,972,267 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01433,215,037 - 33,280,157 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01431,700,160 - 31,765,278 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01434,052,168 - 34,115,763 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1434,051,003 - 34,115,273 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01433,832,589 - 33,895,857 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41433,804,975 - 33,861,257 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11433,804,974 - 33,861,257 (-)NCBI
Celera1430,846,207 - 30,911,495 (-)NCBICelera
Cytogenetic Map14p11NCBI
CEP135
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38455,948,945 - 56,033,361 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl455,948,871 - 56,033,361 (+)EnsemblGRCh38hg38GRCh38
GRCh37456,815,111 - 56,899,527 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36456,509,794 - 56,594,284 (+)NCBINCBI36Build 36hg18NCBI36
Build 34456,655,964 - 56,739,965NCBI
Celera454,321,484 - 54,405,978 (+)NCBICelera
Cytogenetic Map4q12NCBI
HuRef452,768,882 - 52,853,452 (+)NCBIHuRef
CHM1_1456,850,187 - 56,934,716 (+)NCBICHM1_1
T2T-CHM13v2.0459,437,137 - 59,521,552 (+)NCBIT2T-CHM13v2.0
Cep135
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39576,736,495 - 76,794,313 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl576,736,545 - 76,794,313 (+)EnsemblGRCm39 Ensembl
GRCm38576,588,653 - 76,646,466 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl576,588,698 - 76,646,466 (+)EnsemblGRCm38mm10GRCm38
MGSCv37577,020,739 - 77,075,491 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36577,666,489 - 77,721,241 (+)NCBIMGSCv36mm8
Celera573,870,526 - 73,925,325 (+)NCBICelera
Cytogenetic Map5C3.3NCBI
cM Map541.31NCBI
Cep135
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544714,934,269 - 15,004,302 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544714,934,334 - 15,004,077 (-)NCBIChiLan1.0ChiLan1.0
CEP135
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2373,752,145 - 73,836,598 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1473,957,638 - 74,042,116 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0467,895,930 - 67,980,231 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1474,463,689 - 74,547,795 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl474,463,689 - 74,547,735 (-)Ensemblpanpan1.1panPan2
CEP135
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11348,202,649 - 48,280,995 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1348,202,765 - 48,280,014 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1348,093,886 - 48,171,525 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01348,816,267 - 48,894,255 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1348,816,796 - 48,893,958 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11348,490,379 - 48,567,512 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01348,017,735 - 48,096,541 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01348,962,594 - 49,040,586 (+)NCBIUU_Cfam_GSD_1.0
Cep135
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528527,998,961 - 28,071,823 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648218,230,438 - 18,298,259 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648218,230,083 - 18,299,219 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP135
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl855,251,005 - 55,323,350 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1855,250,902 - 55,323,396 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2858,249,813 - 58,310,744 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CEP135
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1712,585,566 - 12,668,476 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl712,585,791 - 12,664,888 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606613,256,613 - 13,340,136 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep135
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476113,391,858 - 13,470,223 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476113,381,876 - 13,470,228 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cep135
233 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:90
Interacting mature miRNAs:98
Transcripts:ENSRNOT00000032156
Prediction methods:Microtar, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2324617Coatc2Coat color QTL 20.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)143076702539153750Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
7387267Uae42Urinary albumin excretion QTL 420.61urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)142216796767167967Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000032156   ⟹   ENSRNOP00000032991
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1431,531,482 - 31,595,772 (-)Ensembl
Rnor_6.0 Ensembl1434,051,003 - 34,115,273 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108575   ⟹   ENSRNOP00000096498
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1431,531,482 - 31,591,352 (-)Ensembl
RefSeq Acc Id: NM_001398887   ⟹   NP_001385816
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,884,781 - 31,950,050 (-)NCBI
mRatBN7.21431,530,542 - 31,595,812 (-)NCBI
RefSeq Acc Id: XM_006250874   ⟹   XP_006250936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,884,774 - 31,949,731 (-)NCBI
mRatBN7.21431,530,538 - 31,595,493 (-)NCBI
Rnor_6.01434,052,168 - 34,115,422 (-)NCBI
Rnor_5.01433,832,589 - 33,895,857 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039092701   ⟹   XP_038948629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,896,142 - 31,949,956 (-)NCBI
mRatBN7.21431,547,491 - 31,595,718 (-)NCBI
RefSeq Acc Id: XM_223341   ⟹   XP_223341
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81431,884,774 - 31,949,647 (-)NCBI
mRatBN7.21431,530,538 - 31,595,398 (-)NCBI
Rnor_6.01434,052,168 - 34,115,202 (-)NCBI
Rnor_5.01433,832,589 - 33,895,857 (-)NCBI
RGSC_v3.41433,804,975 - 33,861,257 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001385816 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250936 (Get FASTA)   NCBI Sequence Viewer  
  XP_038948629 (Get FASTA)   NCBI Sequence Viewer  
  XP_223341 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL89899 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000032991.3
  ENSRNOP00000096498.1
RefSeq Acc Id: XP_223341   ⟸   XM_223341
- Peptide Label: isoform X1
- UniProtKB: D3ZI35 (UniProtKB/TrEMBL),   A0A8I6AQK7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250936   ⟸   XM_006250874
- Peptide Label: isoform X1
- UniProtKB: D3ZI35 (UniProtKB/TrEMBL),   A0A8I6AQK7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000032991   ⟸   ENSRNOT00000032156
RefSeq Acc Id: XP_038948629   ⟸   XM_039092701
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000096498   ⟸   ENSRNOT00000108575
RefSeq Acc Id: NP_001385816   ⟸   NM_001398887
- UniProtKB: D3ZI35 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZI35-F1-model_v2 AlphaFold D3ZI35 1-1140 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310726 AgrOrtholog
BioCyc Gene G2FUF-15951 BioCyc
Ensembl Genes ENSRNOG00000002153 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032156.6 UniProtKB/TrEMBL
  ENSRNOT00000108575.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.1490 UniProtKB/TrEMBL
InterPro Centriole_BasalBody_StrucProt UniProtKB/TrEMBL
NCBI Gene 305288 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN CEP135 UniProtKB/TrEMBL
  CENTROSOMAL PROTEIN CEP135 UniProtKB/TrEMBL
PhenoGen Cep135 PhenoGen
RatGTEx ENSRNOG00000002153 RatGTEx
Superfamily-SCOP Tropomyosin UniProtKB/TrEMBL
UniProt A0A8I6AQK7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZI35 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-04-27 Cep135  centrosomal protein 135  Cep135  centrosomal protein 135kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-29 Cep135  centrosomal protein 135kDa  Cep135  centrosomal protein 135  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-27 Cep135  centrosomal protein 135  RGD1310726_predicted  similar to KIAA0635 gene product (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1310726_predicted  similar to KIAA0635 gene product (predicted)  LOC305288_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC305288_predicted  similar to KIAA0635 gene product (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL